PDB Short entry for 3LRE HEADER MOTOR PROTEIN 11-FEB-10 3LRE TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN KINESIN-8 MOTOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF18A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-355; COMPND 5 SYNONYM: MARROW STROMAL KIF18A, MS-KIF18A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF18A, OK/SW-CL.108; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MOTOR PROTEIN, NUCLEOTIDE BINDING, MICROTUBULE BINDING, ATP-BINDING, KEYWDS 2 CELL PROJECTION, CYTOSKELETON, GLYCOPROTEIN, MICROTUBULE, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, PROTEIN TRANSPORT, KEYWDS 4 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.BREJC,C.A.MOORES,J.HARTMAN REVDAT 3 06-SEP-23 3LRE 1 REMARK LINK REVDAT 2 01-NOV-17 3LRE 1 REMARK REVDAT 1 10-NOV-10 3LRE 0 JRNL AUTH C.PETERS,K.BREJC,L.BELMONT,A.J.BODEY,Y.LEE,M.YU,J.GUO, JRNL AUTH 2 R.SAKOWICZ,J.HARTMAN,C.A.MOORES JRNL TITL INSIGHT INTO THE MOLECULAR MECHANISM OF THE MULTITASKING JRNL TITL 2 KINESIN-8 MOTOR. JRNL REF EMBO J. V. 29 3437 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 20818331 JRNL DOI 10.1038/EMBOJ.2010.220 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 39755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4737 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4282 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6401 ; 1.699 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9987 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 6.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5140 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 899 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 961 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4845 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2918 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.065 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 109 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2918 ; 1.005 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4710 ; 1.873 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1819 ; 2.454 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1691 ; 4.102 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER AXS PROTEUM/R6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : SAINT, LSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1T5C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-13% PEG 20000, 0.1M HEPES PH 7.8, REMARK 280 2% DIOXANE, VAPOR DIFFUSION, TEMPERATURE 275K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -69.42000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 CYS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 PRO A 46 REMARK 465 LYS A 47 REMARK 465 GLN A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 VAL A 51 REMARK 465 SER A 52 REMARK 465 PHE A 53 REMARK 465 PHE A 54 REMARK 465 HIS A 55 REMARK 465 GLY A 56 REMARK 465 LYS A 57 REMARK 465 LYS A 58 REMARK 465 THR A 59 REMARK 465 THR A 60 REMARK 465 ASN A 61 REMARK 465 GLN A 62 REMARK 465 ASN A 63 REMARK 465 VAL A 64 REMARK 465 ILE A 65 REMARK 465 LYS A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 PRO A 218 REMARK 465 THR A 219 REMARK 465 ASP A 220 REMARK 465 MET A 221 REMARK 465 ASN A 222 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 465 THR A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 LYS A 271 REMARK 465 GLY A 272 REMARK 465 THR A 273 REMARK 465 ARG A 274 REMARK 465 PHE A 275 REMARK 465 VAL A 276 REMARK 465 GLU A 277 REMARK 465 GLY A 278 REMARK 465 THR A 279 REMARK 465 ASN A 280 REMARK 465 ILE A 281 REMARK 465 ASP A 297 REMARK 465 SER A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 ASN A 302 REMARK 465 GLN A 303 REMARK 465 HIS A 304 REMARK 465 ASP A 354 REMARK 465 ILE A 355 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 CYS B 9 REMARK 465 PRO B 46 REMARK 465 LYS B 47 REMARK 465 GLN B 48 REMARK 465 GLU B 49 REMARK 465 GLU B 50 REMARK 465 VAL B 51 REMARK 465 SER B 52 REMARK 465 PHE B 53 REMARK 465 PHE B 54 REMARK 465 HIS B 55 REMARK 465 GLY B 56 REMARK 465 LYS B 57 REMARK 465 LYS B 58 REMARK 465 THR B 59 REMARK 465 THR B 60 REMARK 465 ASN B 61 REMARK 465 GLN B 62 REMARK 465 ASN B 63 REMARK 465 VAL B 64 REMARK 465 ILE B 65 REMARK 465 LYS B 66 REMARK 465 LYS B 67 REMARK 465 ARG B 180 REMARK 465 GLU B 181 REMARK 465 ASP B 182 REMARK 465 THR B 183 REMARK 465 GLN B 184 REMARK 465 SER B 266 REMARK 465 THR B 267 REMARK 465 SER B 268 REMARK 465 GLY B 269 REMARK 465 ALA B 270 REMARK 465 LYS B 271 REMARK 465 GLY B 272 REMARK 465 THR B 273 REMARK 465 ARG B 274 REMARK 465 PHE B 275 REMARK 465 VAL B 276 REMARK 465 GLU B 277 REMARK 465 GLY B 278 REMARK 465 ARG B 300 REMARK 465 LYS B 301 REMARK 465 ASN B 302 REMARK 465 GLN B 303 REMARK 465 HIS B 304 REMARK 465 ILE B 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 69 N REMARK 470 GLU B 149 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 385 O HOH A 459 2.03 REMARK 500 O HOH B 369 O HOH B 455 2.14 REMARK 500 NZ LYS A 151 OE1 GLN A 238 2.16 REMARK 500 O HOH B 425 O HOH B 493 2.17 REMARK 500 OE1 GLU A 146 O HOH A 421 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 12 SD MET B 12 CE -0.360 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 145 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 24.19 -77.05 REMARK 500 ASP A 71 56.08 37.60 REMARK 500 THR A 93 -85.97 -128.26 REMARK 500 GLU A 165 13.16 57.07 REMARK 500 PRO A 306 46.12 -74.67 REMARK 500 ASN A 323 -66.39 113.43 REMARK 500 GLU B 25 -52.84 -179.55 REMARK 500 VAL B 37 -60.73 -96.15 REMARK 500 ASP B 38 -154.08 -145.83 REMARK 500 THR B 93 -88.11 -123.60 REMARK 500 ASN B 246 -88.16 71.53 REMARK 500 GLN B 247 143.29 85.38 REMARK 500 ASN B 323 -43.68 101.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 120 OG1 REMARK 620 2 HOH A 446 O 92.0 REMARK 620 3 HOH A 450 O 169.4 98.1 REMARK 620 4 HOH A 457 O 86.3 171.9 83.2 REMARK 620 5 ADP A 500 O2B 91.5 94.1 91.1 93.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 120 OG1 REMARK 620 2 HOH B 382 O 89.4 REMARK 620 3 HOH B 399 O 94.4 91.0 REMARK 620 4 HOH B 484 O 176.8 93.4 84.0 REMARK 620 5 HOH B 494 O 89.4 177.8 90.8 87.9 REMARK 620 6 ADP B 500 O2B 88.1 79.8 170.5 94.0 98.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 500 DBREF 3LRE A 1 355 UNP Q8NI77 KI18A_HUMAN 1 355 DBREF 3LRE B 1 355 UNP Q8NI77 KI18A_HUMAN 1 355 SEQRES 1 A 355 MET SER VAL THR GLU GLU ASP LEU CYS HIS HIS MET LYS SEQRES 2 A 355 VAL VAL VAL ARG VAL ARG PRO GLU ASN THR LYS GLU LYS SEQRES 3 A 355 ALA ALA GLY PHE HIS LYS VAL VAL HIS VAL VAL ASP LYS SEQRES 4 A 355 HIS ILE LEU VAL PHE ASP PRO LYS GLN GLU GLU VAL SER SEQRES 5 A 355 PHE PHE HIS GLY LYS LYS THR THR ASN GLN ASN VAL ILE SEQRES 6 A 355 LYS LYS GLN ASN LYS ASP LEU LYS PHE VAL PHE ASP ALA SEQRES 7 A 355 VAL PHE ASP GLU THR SER THR GLN SER GLU VAL PHE GLU SEQRES 8 A 355 HIS THR THR LYS PRO ILE LEU ARG SER PHE LEU ASN GLY SEQRES 9 A 355 TYR ASN CYS THR VAL LEU ALA TYR GLY ALA THR GLY ALA SEQRES 10 A 355 GLY LYS THR HIS THR MET LEU GLY SER ALA ASP GLU PRO SEQRES 11 A 355 GLY VAL MET TYR LEU THR MET LEU HIS LEU TYR LYS CYS SEQRES 12 A 355 MET ASP GLU ILE LYS GLU GLU LYS ILE CYS SER THR ALA SEQRES 13 A 355 VAL SER TYR LEU GLU VAL TYR ASN GLU GLN ILE ARG ASP SEQRES 14 A 355 LEU LEU VAL ASN SER GLY PRO LEU ALA VAL ARG GLU ASP SEQRES 15 A 355 THR GLN LYS GLY VAL VAL VAL HIS GLY LEU THR LEU HIS SEQRES 16 A 355 GLN PRO LYS SER SER GLU GLU ILE LEU HIS LEU LEU ASP SEQRES 17 A 355 ASN GLY ASN LYS ASN ARG THR GLN HIS PRO THR ASP MET SEQRES 18 A 355 ASN ALA THR SER SER ARG SER HIS ALA VAL PHE GLN ILE SEQRES 19 A 355 TYR LEU ARG GLN GLN ASP LYS THR ALA SER ILE ASN GLN SEQRES 20 A 355 ASN VAL ARG ILE ALA LYS MET SER LEU ILE ASP LEU ALA SEQRES 21 A 355 GLY SER GLU ARG ALA SER THR SER GLY ALA LYS GLY THR SEQRES 22 A 355 ARG PHE VAL GLU GLY THR ASN ILE ASN ARG SER LEU LEU SEQRES 23 A 355 ALA LEU GLY ASN VAL ILE ASN ALA LEU ALA ASP SER LYS SEQRES 24 A 355 ARG LYS ASN GLN HIS ILE PRO TYR ARG ASN SER LYS LEU SEQRES 25 A 355 THR ARG LEU LEU LYS ASP SER LEU GLY GLY ASN CYS GLN SEQRES 26 A 355 THR ILE MET ILE ALA ALA VAL SER PRO SER SER VAL PHE SEQRES 27 A 355 TYR ASP ASP THR TYR ASN THR LEU LYS TYR ALA ASN ARG SEQRES 28 A 355 ALA LYS ASP ILE SEQRES 1 B 355 MET SER VAL THR GLU GLU ASP LEU CYS HIS HIS MET LYS SEQRES 2 B 355 VAL VAL VAL ARG VAL ARG PRO GLU ASN THR LYS GLU LYS SEQRES 3 B 355 ALA ALA GLY PHE HIS LYS VAL VAL HIS VAL VAL ASP LYS SEQRES 4 B 355 HIS ILE LEU VAL PHE ASP PRO LYS GLN GLU GLU VAL SER SEQRES 5 B 355 PHE PHE HIS GLY LYS LYS THR THR ASN GLN ASN VAL ILE SEQRES 6 B 355 LYS LYS GLN ASN LYS ASP LEU LYS PHE VAL PHE ASP ALA SEQRES 7 B 355 VAL PHE ASP GLU THR SER THR GLN SER GLU VAL PHE GLU SEQRES 8 B 355 HIS THR THR LYS PRO ILE LEU ARG SER PHE LEU ASN GLY SEQRES 9 B 355 TYR ASN CYS THR VAL LEU ALA TYR GLY ALA THR GLY ALA SEQRES 10 B 355 GLY LYS THR HIS THR MET LEU GLY SER ALA ASP GLU PRO SEQRES 11 B 355 GLY VAL MET TYR LEU THR MET LEU HIS LEU TYR LYS CYS SEQRES 12 B 355 MET ASP GLU ILE LYS GLU GLU LYS ILE CYS SER THR ALA SEQRES 13 B 355 VAL SER TYR LEU GLU VAL TYR ASN GLU GLN ILE ARG ASP SEQRES 14 B 355 LEU LEU VAL ASN SER GLY PRO LEU ALA VAL ARG GLU ASP SEQRES 15 B 355 THR GLN LYS GLY VAL VAL VAL HIS GLY LEU THR LEU HIS SEQRES 16 B 355 GLN PRO LYS SER SER GLU GLU ILE LEU HIS LEU LEU ASP SEQRES 17 B 355 ASN GLY ASN LYS ASN ARG THR GLN HIS PRO THR ASP MET SEQRES 18 B 355 ASN ALA THR SER SER ARG SER HIS ALA VAL PHE GLN ILE SEQRES 19 B 355 TYR LEU ARG GLN GLN ASP LYS THR ALA SER ILE ASN GLN SEQRES 20 B 355 ASN VAL ARG ILE ALA LYS MET SER LEU ILE ASP LEU ALA SEQRES 21 B 355 GLY SER GLU ARG ALA SER THR SER GLY ALA LYS GLY THR SEQRES 22 B 355 ARG PHE VAL GLU GLY THR ASN ILE ASN ARG SER LEU LEU SEQRES 23 B 355 ALA LEU GLY ASN VAL ILE ASN ALA LEU ALA ASP SER LYS SEQRES 24 B 355 ARG LYS ASN GLN HIS ILE PRO TYR ARG ASN SER LYS LEU SEQRES 25 B 355 THR ARG LEU LEU LYS ASP SER LEU GLY GLY ASN CYS GLN SEQRES 26 B 355 THR ILE MET ILE ALA ALA VAL SER PRO SER SER VAL PHE SEQRES 27 B 355 TYR ASP ASP THR TYR ASN THR LEU LYS TYR ALA ASN ARG SEQRES 28 B 355 ALA LYS ASP ILE HET MG A 501 1 HET ADP A 500 27 HET MG B 501 1 HET ADP B 500 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *245(H2 O) HELIX 1 1 ASN A 22 ALA A 28 1 7 HELIX 2 2 THR A 85 HIS A 92 1 8 HELIX 3 3 THR A 93 LEU A 102 1 10 HELIX 4 4 GLY A 118 LEU A 124 1 7 HELIX 5 5 GLY A 131 ILE A 147 1 17 HELIX 6 6 SER A 199 ASN A 213 1 15 HELIX 7 7 ASN A 282 ALA A 296 1 15 HELIX 8 8 PRO A 306 ASN A 309 5 4 HELIX 9 9 SER A 310 LEU A 316 1 7 HELIX 10 10 SER A 335 VAL A 337 5 3 HELIX 11 11 PHE A 338 ALA A 352 1 15 HELIX 12 12 ASN B 22 ALA B 27 1 6 HELIX 13 13 THR B 85 HIS B 92 1 8 HELIX 14 14 THR B 93 ASN B 103 1 11 HELIX 15 15 GLY B 118 LEU B 124 1 7 HELIX 16 16 GLY B 131 ASP B 145 1 15 HELIX 17 17 SER B 199 ASN B 213 1 15 HELIX 18 18 ASN B 282 SER B 298 1 17 HELIX 19 19 PRO B 306 ASN B 309 5 4 HELIX 20 20 SER B 310 LEU B 316 1 7 HELIX 21 21 LEU B 316 GLY B 321 1 6 HELIX 22 22 SER B 335 VAL B 337 5 3 HELIX 23 23 PHE B 338 LYS B 353 1 16 SHEET 1 A 8 ALA A 78 PHE A 80 0 SHEET 2 A 8 LYS A 13 VAL A 18 1 N VAL A 16 O PHE A 80 SHEET 3 A 8 GLN A 325 VAL A 332 1 O MET A 328 N VAL A 15 SHEET 4 A 8 CYS A 107 TYR A 112 1 N TYR A 112 O ALA A 331 SHEET 5 A 8 ALA A 252 ASP A 258 1 O SER A 255 N VAL A 109 SHEET 6 A 8 HIS A 229 ASP A 240 -1 N PHE A 232 O LEU A 256 SHEET 7 A 8 LYS A 151 TYR A 163 -1 N LEU A 160 O VAL A 231 SHEET 8 A 8 GLN A 166 ASP A 169 -1 O ARG A 168 N GLU A 161 SHEET 1 B 3 VAL A 34 VAL A 36 0 SHEET 2 B 3 ILE A 41 PHE A 44 -1 O VAL A 43 N HIS A 35 SHEET 3 B 3 LEU A 72 VAL A 75 -1 O LEU A 72 N PHE A 44 SHEET 1 C 2 ALA A 178 GLU A 181 0 SHEET 2 C 2 VAL A 187 HIS A 190 -1 O VAL A 188 N ARG A 180 SHEET 1 D 8 ALA B 78 PHE B 80 0 SHEET 2 D 8 LYS B 13 VAL B 18 1 N VAL B 16 O PHE B 80 SHEET 3 D 8 GLN B 325 VAL B 332 1 O MET B 328 N VAL B 15 SHEET 4 D 8 CYS B 107 TYR B 112 1 N TYR B 112 O ALA B 331 SHEET 5 D 8 ARG B 250 ASP B 258 1 O SER B 255 N VAL B 109 SHEET 6 D 8 SER B 228 ASP B 240 -1 N PHE B 232 O LEU B 256 SHEET 7 D 8 LYS B 151 TYR B 163 -1 N LEU B 160 O VAL B 231 SHEET 8 D 8 GLN B 166 ASP B 169 -1 O ARG B 168 N GLU B 161 SHEET 1 E 3 VAL B 34 VAL B 36 0 SHEET 2 E 3 ILE B 41 PHE B 44 -1 O VAL B 43 N HIS B 35 SHEET 3 E 3 LEU B 72 VAL B 75 -1 O PHE B 74 N LEU B 42 LINK OG1 THR A 120 MG MG A 501 1555 1555 2.10 LINK O HOH A 446 MG MG A 501 1555 1555 2.16 LINK O HOH A 450 MG MG A 501 1555 1555 2.35 LINK O HOH A 457 MG MG A 501 1555 1555 2.25 LINK O2B ADP A 500 MG MG A 501 1555 1555 2.00 LINK OG1 THR B 120 MG MG B 501 1555 1555 2.00 LINK O HOH B 382 MG MG B 501 1555 1555 2.18 LINK O HOH B 399 MG MG B 501 1555 1555 2.04 LINK O HOH B 484 MG MG B 501 1555 1555 2.12 LINK O HOH B 494 MG MG B 501 1555 1555 1.91 LINK O2B ADP B 500 MG MG B 501 1555 1555 1.96 SITE 1 AC1 5 THR A 120 HOH A 446 HOH A 450 HOH A 457 SITE 2 AC1 5 ADP A 500 SITE 1 AC2 17 ARG A 19 PRO A 20 ALA A 114 THR A 115 SITE 2 AC2 17 GLY A 116 ALA A 117 GLY A 118 LYS A 119 SITE 3 AC2 17 THR A 120 HIS A 121 HOH A 372 HOH A 376 SITE 4 AC2 17 HOH A 383 HOH A 397 HOH A 446 HOH A 450 SITE 5 AC2 17 MG A 501 SITE 1 AC3 6 THR B 120 HOH B 382 HOH B 399 HOH B 484 SITE 2 AC3 6 HOH B 494 ADP B 500 SITE 1 AC4 23 ARG B 17 ARG B 19 PRO B 20 ALA B 114 SITE 2 AC4 23 THR B 115 GLY B 116 ALA B 117 GLY B 118 SITE 3 AC4 23 LYS B 119 THR B 120 HIS B 121 HOH B 360 SITE 4 AC4 23 HOH B 376 HOH B 382 HOH B 388 HOH B 390 SITE 5 AC4 23 HOH B 408 HOH B 443 HOH B 461 HOH B 481 SITE 6 AC4 23 HOH B 484 HOH B 494 MG B 501 CRYST1 69.420 79.744 140.145 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007135 0.00000