PDB Short entry for 3LU7 HEADER TRANSPORT PROTEIN 17-FEB-10 3LU7 TITLE HUMAN SERUM ALBUMIN IN COMPLEX WITH COMPOUND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERUM ALBUMIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS BINDING SITES, LIGANDS, PROTEIN BINDING, SERUM ALBUMIN, HSA, PROTEROS KEYWDS 2 BIOSTRUCTURES GMBH, TRANSPORT PROTEIN, ASTRAZENECA, DRUG DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR D.BUTTAR,N.COLCLOUGH,S.GERHARDT,P.A.MACFAUL,S.D.PHILLIPS,A.PLOWRIGHT, AUTHOR 2 P.WHITTAMORE,K.TAM,K.MASKOS,S.STEINBACHER,H.STEUBER REVDAT 1 27-OCT-10 3LU7 0 JRNL AUTH D.BUTTAR,N.COLCLOUGH,S.GERHARDT,P.A.MACFAUL,S.D.PHILLIPS, JRNL AUTH 2 A.PLOWRIGHT,P.WHITTAMORE,K.TAM,K.MASKOS,S.STEINBACHER, JRNL AUTH 3 H.STEUBER JRNL TITL A COMBINED SPECTROSCOPIC AND CRYSTALLOGRAPHIC APPROACH TO JRNL TITL 2 PROBING DRUG-HUMAN SERUM ALBUMIN INTERACTIONS JRNL REF BIOORG.MED.CHEM. V. 18 7486 2010 JRNL REFN ISSN 0968-0896 JRNL PMID 20869876 JRNL DOI 10.1016/J.BMC.2010.08.052 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 26029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.66000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -3.53000 REMARK 3 B12 (A**2) : -3.22000 REMARK 3 B13 (A**2) : -1.32000 REMARK 3 B23 (A**2) : 1.59000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.481 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.738 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9492 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 8410 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12834 ; 1.120 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19754 ; 0.760 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1154 ; 5.677 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 446 ;36.418 ;24.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1730 ;16.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1410 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10416 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1838 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2443 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8417 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4527 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 5315 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 218 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.118 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7541 ; 1.783 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2290 ; 0.303 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9352 ; 2.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4310 ; 3.436 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3482 ; 4.992 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LU7 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB057735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98010 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 92.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 7.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 583 REMARK 465 GLY A 584 REMARK 465 LEU A 585 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 LEU B 583 REMARK 465 GLY B 584 REMARK 465 LEU B 585 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 538 CG CD CE NZ REMARK 480 GLU A 556 CG CD OE1 OE2 REMARK 480 LYS A 557 CG CD CE NZ REMARK 480 LYS A 560 CG CD CE NZ REMARK 480 LYS A 564 CG CD CE NZ REMARK 480 LYS B 538 CG CD CE NZ REMARK 480 LYS B 541 CG CD CE NZ REMARK 480 GLU B 542 CG CD OE1 OE2 REMARK 480 GLU B 556 OE2 REMARK 480 LYS B 560 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 363 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 ALA A 363 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO A 366 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 -22.44 90.28 REMARK 500 LEU A 80 91.70 -69.71 REMARK 500 GLU A 82 -12.45 -44.09 REMARK 500 ASN A 111 78.68 -61.87 REMARK 500 PRO A 118 -176.16 -69.81 REMARK 500 ASN A 130 86.06 -167.10 REMARK 500 ILE A 271 -55.65 -126.36 REMARK 500 LYS A 276 -54.14 -21.19 REMARK 500 GLU A 292 53.56 -115.34 REMARK 500 VAL A 310 -58.80 -143.76 REMARK 500 ALA A 322 85.53 -157.49 REMARK 500 ALA A 363 0.88 109.28 REMARK 500 ALA A 364 -37.36 -139.15 REMARK 500 ASP A 365 2.56 -174.80 REMARK 500 PRO A 366 -65.00 -2.78 REMARK 500 HIS A 367 -0.54 -47.90 REMARK 500 VAL A 469 -59.55 -128.67 REMARK 500 PHE A 502 170.03 179.56 REMARK 500 LYS A 536 82.41 -152.19 REMARK 500 THR A 540 51.55 -167.19 REMARK 500 LYS A 541 -152.67 -77.97 REMARK 500 GLN A 543 -27.34 -36.12 REMARK 500 SER B 5 103.92 95.49 REMARK 500 GLU B 60 -72.07 -35.42 REMARK 500 LEU B 80 27.54 -170.88 REMARK 500 ARG B 81 -40.73 -24.80 REMARK 500 GLU B 82 -17.00 -40.53 REMARK 500 TYR B 84 -96.97 -103.51 REMARK 500 ASN B 109 72.91 -153.05 REMARK 500 LEU B 178 -72.14 -77.48 REMARK 500 PHE B 223 65.08 -115.81 REMARK 500 ASN B 267 47.94 -101.05 REMARK 500 LYS B 274 30.37 -98.04 REMARK 500 PRO B 303 -171.99 -66.29 REMARK 500 ALA B 306 -57.63 -25.20 REMARK 500 ALA B 307 -63.27 -24.87 REMARK 500 VAL B 310 -66.79 -132.46 REMARK 500 ALA B 322 98.46 -164.39 REMARK 500 ALA B 364 -105.23 -16.48 REMARK 500 LYS B 432 1.90 -65.67 REMARK 500 GLU B 442 -16.95 -42.94 REMARK 500 LYS B 466 -72.85 -58.51 REMARK 500 THR B 467 77.75 -109.51 REMARK 500 VAL B 493 135.23 -33.94 REMARK 500 GLU B 501 -132.27 68.01 REMARK 500 ALA B 504 -76.27 -71.84 REMARK 500 LYS B 538 -73.24 -73.48 REMARK 500 LYS B 541 -105.67 -145.28 REMARK 500 LYS B 560 54.59 -99.63 REMARK 500 LYS B 564 52.11 -101.12 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 362 ALA A 363 117.65 REMARK 500 ALA A 363 ALA A 364 -146.16 REMARK 500 LYS B 500 GLU B 501 102.25 REMARK 500 PHE B 502 ASN B 503 131.75 REMARK 500 ASN B 503 ALA B 504 147.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA A 363 7.7 L L EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPX A 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPX B 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 587 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 587 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 589 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LU6 RELATED DB: PDB REMARK 900 RELATED ID: 3LU8 RELATED DB: PDB DBREF 3LU7 A 1 585 UNP P02768 ALBU_HUMAN 25 609 DBREF 3LU7 B 1 585 UNP P02768 ALBU_HUMAN 25 609 SEQRES 1 A 585 ASP ALA HIS LYS SER GLU VAL ALA HIS ARG PHE LYS ASP SEQRES 2 A 585 LEU GLY GLU GLU ASN PHE LYS ALA LEU VAL LEU ILE ALA SEQRES 3 A 585 PHE ALA GLN TYR LEU GLN GLN CYS PRO PHE GLU ASP HIS SEQRES 4 A 585 VAL LYS LEU VAL ASN GLU VAL THR GLU PHE ALA LYS THR SEQRES 5 A 585 CYS VAL ALA ASP GLU SER ALA GLU ASN CYS ASP LYS SER SEQRES 6 A 585 LEU HIS THR LEU PHE GLY ASP LYS LEU CYS THR VAL ALA SEQRES 7 A 585 THR LEU ARG GLU THR TYR GLY GLU MET ALA ASP CYS CYS SEQRES 8 A 585 ALA LYS GLN GLU PRO GLU ARG ASN GLU CYS PHE LEU GLN SEQRES 9 A 585 HIS LYS ASP ASP ASN PRO ASN LEU PRO ARG LEU VAL ARG SEQRES 10 A 585 PRO GLU VAL ASP VAL MET CYS THR ALA PHE HIS ASP ASN SEQRES 11 A 585 GLU GLU THR PHE LEU LYS LYS TYR LEU TYR GLU ILE ALA SEQRES 12 A 585 ARG ARG HIS PRO TYR PHE TYR ALA PRO GLU LEU LEU PHE SEQRES 13 A 585 PHE ALA LYS ARG TYR LYS ALA ALA PHE THR GLU CYS CYS SEQRES 14 A 585 GLN ALA ALA ASP LYS ALA ALA CYS LEU LEU PRO LYS LEU SEQRES 15 A 585 ASP GLU LEU ARG ASP GLU GLY LYS ALA SER SER ALA LYS SEQRES 16 A 585 GLN ARG LEU LYS CYS ALA SER LEU GLN LYS PHE GLY GLU SEQRES 17 A 585 ARG ALA PHE LYS ALA TRP ALA VAL ALA ARG LEU SER GLN SEQRES 18 A 585 ARG PHE PRO LYS ALA GLU PHE ALA GLU VAL SER LYS LEU SEQRES 19 A 585 VAL THR ASP LEU THR LYS VAL HIS THR GLU CYS CYS HIS SEQRES 20 A 585 GLY ASP LEU LEU GLU CYS ALA ASP ASP ARG ALA ASP LEU SEQRES 21 A 585 ALA LYS TYR ILE CYS GLU ASN GLN ASP SER ILE SER SER SEQRES 22 A 585 LYS LEU LYS GLU CYS CYS GLU LYS PRO LEU LEU GLU LYS SEQRES 23 A 585 SER HIS CYS ILE ALA GLU VAL GLU ASN ASP GLU MET PRO SEQRES 24 A 585 ALA ASP LEU PRO SER LEU ALA ALA ASP PHE VAL GLU SER SEQRES 25 A 585 LYS ASP VAL CYS LYS ASN TYR ALA GLU ALA LYS ASP VAL SEQRES 26 A 585 PHE LEU GLY MET PHE LEU TYR GLU TYR ALA ARG ARG HIS SEQRES 27 A 585 PRO ASP TYR SER VAL VAL LEU LEU LEU ARG LEU ALA LYS SEQRES 28 A 585 THR TYR GLU THR THR LEU GLU LYS CYS CYS ALA ALA ALA SEQRES 29 A 585 ASP PRO HIS GLU CYS TYR ALA LYS VAL PHE ASP GLU PHE SEQRES 30 A 585 LYS PRO LEU VAL GLU GLU PRO GLN ASN LEU ILE LYS GLN SEQRES 31 A 585 ASN CYS GLU LEU PHE GLU GLN LEU GLY GLU TYR LYS PHE SEQRES 32 A 585 GLN ASN ALA LEU LEU VAL ARG TYR THR LYS LYS VAL PRO SEQRES 33 A 585 GLN VAL SER THR PRO THR LEU VAL GLU VAL SER ARG ASN SEQRES 34 A 585 LEU GLY LYS VAL GLY SER LYS CYS CYS LYS HIS PRO GLU SEQRES 35 A 585 ALA LYS ARG MET PRO CYS ALA GLU ASP TYR LEU SER VAL SEQRES 36 A 585 VAL LEU ASN GLN LEU CYS VAL LEU HIS GLU LYS THR PRO SEQRES 37 A 585 VAL SER ASP ARG VAL THR LYS CYS CYS THR GLU SER LEU SEQRES 38 A 585 VAL ASN ARG ARG PRO CYS PHE SER ALA LEU GLU VAL ASP SEQRES 39 A 585 GLU THR TYR VAL PRO LYS GLU PHE ASN ALA GLU THR PHE SEQRES 40 A 585 THR PHE HIS ALA ASP ILE CYS THR LEU SER GLU LYS GLU SEQRES 41 A 585 ARG GLN ILE LYS LYS GLN THR ALA LEU VAL GLU LEU VAL SEQRES 42 A 585 LYS HIS LYS PRO LYS ALA THR LYS GLU GLN LEU LYS ALA SEQRES 43 A 585 VAL MET ASP ASP PHE ALA ALA PHE VAL GLU LYS CYS CYS SEQRES 44 A 585 LYS ALA ASP ASP LYS GLU THR CYS PHE ALA GLU GLU GLY SEQRES 45 A 585 LYS LYS LEU VAL ALA ALA SER GLN ALA ALA LEU GLY LEU SEQRES 1 B 585 ASP ALA HIS LYS SER GLU VAL ALA HIS ARG PHE LYS ASP SEQRES 2 B 585 LEU GLY GLU GLU ASN PHE LYS ALA LEU VAL LEU ILE ALA SEQRES 3 B 585 PHE ALA GLN TYR LEU GLN GLN CYS PRO PHE GLU ASP HIS SEQRES 4 B 585 VAL LYS LEU VAL ASN GLU VAL THR GLU PHE ALA LYS THR SEQRES 5 B 585 CYS VAL ALA ASP GLU SER ALA GLU ASN CYS ASP LYS SER SEQRES 6 B 585 LEU HIS THR LEU PHE GLY ASP LYS LEU CYS THR VAL ALA SEQRES 7 B 585 THR LEU ARG GLU THR TYR GLY GLU MET ALA ASP CYS CYS SEQRES 8 B 585 ALA LYS GLN GLU PRO GLU ARG ASN GLU CYS PHE LEU GLN SEQRES 9 B 585 HIS LYS ASP ASP ASN PRO ASN LEU PRO ARG LEU VAL ARG SEQRES 10 B 585 PRO GLU VAL ASP VAL MET CYS THR ALA PHE HIS ASP ASN SEQRES 11 B 585 GLU GLU THR PHE LEU LYS LYS TYR LEU TYR GLU ILE ALA SEQRES 12 B 585 ARG ARG HIS PRO TYR PHE TYR ALA PRO GLU LEU LEU PHE SEQRES 13 B 585 PHE ALA LYS ARG TYR LYS ALA ALA PHE THR GLU CYS CYS SEQRES 14 B 585 GLN ALA ALA ASP LYS ALA ALA CYS LEU LEU PRO LYS LEU SEQRES 15 B 585 ASP GLU LEU ARG ASP GLU GLY LYS ALA SER SER ALA LYS SEQRES 16 B 585 GLN ARG LEU LYS CYS ALA SER LEU GLN LYS PHE GLY GLU SEQRES 17 B 585 ARG ALA PHE LYS ALA TRP ALA VAL ALA ARG LEU SER GLN SEQRES 18 B 585 ARG PHE PRO LYS ALA GLU PHE ALA GLU VAL SER LYS LEU SEQRES 19 B 585 VAL THR ASP LEU THR LYS VAL HIS THR GLU CYS CYS HIS SEQRES 20 B 585 GLY ASP LEU LEU GLU CYS ALA ASP ASP ARG ALA ASP LEU SEQRES 21 B 585 ALA LYS TYR ILE CYS GLU ASN GLN ASP SER ILE SER SER SEQRES 22 B 585 LYS LEU LYS GLU CYS CYS GLU LYS PRO LEU LEU GLU LYS SEQRES 23 B 585 SER HIS CYS ILE ALA GLU VAL GLU ASN ASP GLU MET PRO SEQRES 24 B 585 ALA ASP LEU PRO SER LEU ALA ALA ASP PHE VAL GLU SER SEQRES 25 B 585 LYS ASP VAL CYS LYS ASN TYR ALA GLU ALA LYS ASP VAL SEQRES 26 B 585 PHE LEU GLY MET PHE LEU TYR GLU TYR ALA ARG ARG HIS SEQRES 27 B 585 PRO ASP TYR SER VAL VAL LEU LEU LEU ARG LEU ALA LYS SEQRES 28 B 585 THR TYR GLU THR THR LEU GLU LYS CYS CYS ALA ALA ALA SEQRES 29 B 585 ASP PRO HIS GLU CYS TYR ALA LYS VAL PHE ASP GLU PHE SEQRES 30 B 585 LYS PRO LEU VAL GLU GLU PRO GLN ASN LEU ILE LYS GLN SEQRES 31 B 585 ASN CYS GLU LEU PHE GLU GLN LEU GLY GLU TYR LYS PHE SEQRES 32 B 585 GLN ASN ALA LEU LEU VAL ARG TYR THR LYS LYS VAL PRO SEQRES 33 B 585 GLN VAL SER THR PRO THR LEU VAL GLU VAL SER ARG ASN SEQRES 34 B 585 LEU GLY LYS VAL GLY SER LYS CYS CYS LYS HIS PRO GLU SEQRES 35 B 585 ALA LYS ARG MET PRO CYS ALA GLU ASP TYR LEU SER VAL SEQRES 36 B 585 VAL LEU ASN GLN LEU CYS VAL LEU HIS GLU LYS THR PRO SEQRES 37 B 585 VAL SER ASP ARG VAL THR LYS CYS CYS THR GLU SER LEU SEQRES 38 B 585 VAL ASN ARG ARG PRO CYS PHE SER ALA LEU GLU VAL ASP SEQRES 39 B 585 GLU THR TYR VAL PRO LYS GLU PHE ASN ALA GLU THR PHE SEQRES 40 B 585 THR PHE HIS ALA ASP ILE CYS THR LEU SER GLU LYS GLU SEQRES 41 B 585 ARG GLN ILE LYS LYS GLN THR ALA LEU VAL GLU LEU VAL SEQRES 42 B 585 LYS HIS LYS PRO LYS ALA THR LYS GLU GLN LEU LYS ALA SEQRES 43 B 585 VAL MET ASP ASP PHE ALA ALA PHE VAL GLU LYS CYS CYS SEQRES 44 B 585 LYS ALA ASP ASP LYS GLU THR CYS PHE ALA GLU GLU GLY SEQRES 45 B 585 LYS LYS LEU VAL ALA ALA SER GLN ALA ALA LEU GLY LEU HET IPX A 586 28 HET PO4 A 587 5 HET PO4 A 588 5 HET PO4 A 589 5 HET IPX B 586 28 HET PO4 B 587 5 HET PO4 B 588 5 HETNAM IPX 4-[(1R,2R)-2-{[(5-FLUORO-1H-INDOL-2-YL)CARBONYL]AMINO}- HETNAM 2 IPX 2,3-DIHYDRO-1H-INDEN-1-YL]BUTANOIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 IPX 2(C22 H21 F N2 O3) FORMUL 4 PO4 5(O4 P 3-) FORMUL 10 HOH *3(H2 O) HELIX 1 1 SER A 5 LEU A 31 1 27 HELIX 2 2 PRO A 35 ASP A 56 1 22 HELIX 3 3 SER A 65 THR A 79 1 15 HELIX 4 4 GLU A 86 LYS A 93 1 8 HELIX 5 5 PRO A 96 HIS A 105 1 10 HELIX 6 6 GLU A 119 ASN A 130 1 12 HELIX 7 7 ASN A 130 HIS A 146 1 17 HELIX 8 8 TYR A 150 CYS A 169 1 20 HELIX 9 9 ASP A 173 GLY A 207 1 35 HELIX 10 10 GLY A 207 PHE A 223 1 17 HELIX 11 11 GLU A 227 HIS A 247 1 21 HELIX 12 12 ASP A 249 ASN A 267 1 19 HELIX 13 13 GLN A 268 ILE A 271 5 4 HELIX 14 14 LEU A 275 GLU A 280 1 6 HELIX 15 15 PRO A 282 GLU A 292 1 11 HELIX 16 16 LEU A 305 VAL A 310 1 6 HELIX 17 17 ASP A 314 ALA A 322 1 9 HELIX 18 18 ALA A 322 HIS A 338 1 17 HELIX 19 19 SER A 342 CYS A 361 1 20 HELIX 20 20 GLU A 368 ALA A 371 5 4 HELIX 21 21 LYS A 372 VAL A 415 1 44 HELIX 22 22 SER A 419 LYS A 432 1 14 HELIX 23 23 LYS A 432 LYS A 439 1 8 HELIX 24 24 PRO A 441 THR A 467 1 27 HELIX 25 25 SER A 470 SER A 480 1 11 HELIX 26 26 ASN A 483 LEU A 491 1 9 HELIX 27 27 HIS A 510 LEU A 516 5 7 HELIX 28 28 SER A 517 LYS A 536 1 20 HELIX 29 29 GLU A 542 CYS A 559 1 18 HELIX 30 30 GLU A 565 GLU A 570 1 6 HELIX 31 31 GLU A 570 ALA A 582 1 13 HELIX 32 32 SER B 5 GLY B 15 1 11 HELIX 33 33 GLY B 15 LEU B 31 1 17 HELIX 34 34 PRO B 35 ASP B 56 1 22 HELIX 35 35 ALA B 59 LYS B 64 5 6 HELIX 36 36 SER B 65 THR B 79 1 15 HELIX 37 37 MET B 87 LYS B 93 1 7 HELIX 38 38 PRO B 96 LYS B 106 1 11 HELIX 39 39 GLU B 119 ASN B 130 1 12 HELIX 40 40 ASN B 130 HIS B 146 1 17 HELIX 41 41 TYR B 150 CYS B 169 1 20 HELIX 42 42 ASP B 173 GLY B 207 1 35 HELIX 43 43 GLY B 207 PHE B 223 1 17 HELIX 44 44 GLU B 227 HIS B 247 1 21 HELIX 45 45 ASP B 249 ASN B 267 1 19 HELIX 46 46 GLN B 268 ILE B 271 5 4 HELIX 47 47 GLU B 277 LYS B 281 5 5 HELIX 48 48 PRO B 282 GLU B 292 1 11 HELIX 49 49 LEU B 305 VAL B 310 1 6 HELIX 50 50 ASP B 314 ALA B 322 1 9 HELIX 51 51 ALA B 322 HIS B 338 1 17 HELIX 52 52 SER B 342 CYS B 361 1 20 HELIX 53 53 ASP B 365 ALA B 371 1 7 HELIX 54 54 LYS B 372 PHE B 377 1 6 HELIX 55 55 PHE B 377 GLY B 399 1 23 HELIX 56 56 GLY B 399 VAL B 415 1 17 HELIX 57 57 SER B 419 LYS B 432 1 14 HELIX 58 58 LYS B 432 CYS B 438 1 7 HELIX 59 59 LYS B 444 THR B 467 1 24 HELIX 60 60 SER B 470 GLU B 479 1 10 HELIX 61 61 ASN B 483 ALA B 490 1 8 HELIX 62 62 HIS B 510 THR B 515 5 6 HELIX 63 63 SER B 517 LYS B 536 1 20 HELIX 64 64 GLU B 542 LYS B 560 1 19 HELIX 65 65 GLU B 565 GLU B 571 1 7 HELIX 66 66 GLU B 571 ALA B 582 1 12 SSBOND 1 CYS A 53 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 75 CYS A 91 1555 1555 2.04 SSBOND 3 CYS A 90 CYS A 101 1555 1555 2.03 SSBOND 4 CYS A 124 CYS A 169 1555 1555 2.05 SSBOND 5 CYS A 168 CYS A 177 1555 1555 2.06 SSBOND 6 CYS A 200 CYS A 246 1555 1555 2.04 SSBOND 7 CYS A 245 CYS A 253 1555 1555 2.04 SSBOND 8 CYS A 265 CYS A 279 1555 1555 2.05 SSBOND 9 CYS A 278 CYS A 289 1555 1555 2.04 SSBOND 10 CYS A 316 CYS A 361 1555 1555 2.04 SSBOND 11 CYS A 360 CYS A 369 1555 1555 2.05 SSBOND 12 CYS A 392 CYS A 438 1555 1555 2.04 SSBOND 13 CYS A 437 CYS A 448 1555 1555 2.05 SSBOND 14 CYS A 461 CYS A 477 1555 1555 2.02 SSBOND 15 CYS A 476 CYS A 487 1555 1555 2.04 SSBOND 16 CYS A 514 CYS A 559 1555 1555 2.03 SSBOND 17 CYS A 558 CYS A 567 1555 1555 2.03 SSBOND 18 CYS B 53 CYS B 62 1555 1555 2.03 SSBOND 19 CYS B 75 CYS B 91 1555 1555 2.04 SSBOND 20 CYS B 90 CYS B 101 1555 1555 2.06 SSBOND 21 CYS B 124 CYS B 169 1555 1555 2.04 SSBOND 22 CYS B 168 CYS B 177 1555 1555 2.04 SSBOND 23 CYS B 200 CYS B 246 1555 1555 2.05 SSBOND 24 CYS B 245 CYS B 253 1555 1555 2.03 SSBOND 25 CYS B 265 CYS B 279 1555 1555 2.05 SSBOND 26 CYS B 278 CYS B 289 1555 1555 2.06 SSBOND 27 CYS B 316 CYS B 361 1555 1555 2.05 SSBOND 28 CYS B 360 CYS B 369 1555 1555 2.05 SSBOND 29 CYS B 392 CYS B 438 1555 1555 2.03 SSBOND 30 CYS B 437 CYS B 448 1555 1555 2.04 SSBOND 31 CYS B 461 CYS B 477 1555 1555 2.02 SSBOND 32 CYS B 476 CYS B 487 1555 1555 2.06 SSBOND 33 CYS B 514 CYS B 559 1555 1555 2.03 SSBOND 34 CYS B 558 CYS B 567 1555 1555 2.04 CISPEP 1 GLU A 95 PRO A 96 0 -7.53 CISPEP 2 GLU B 95 PRO B 96 0 3.37 SITE 1 AC1 14 TYR A 150 LYS A 199 SER A 202 PHE A 211 SITE 2 AC1 14 TRP A 214 ARG A 218 LEU A 219 ARG A 222 SITE 3 AC1 14 LEU A 238 HIS A 242 ARG A 257 ILE A 290 SITE 4 AC1 14 ALA A 291 PO4 A 587 SITE 1 AC2 14 TYR B 150 LYS B 199 SER B 202 PHE B 211 SITE 2 AC2 14 TRP B 214 ARG B 218 LEU B 219 ARG B 222 SITE 3 AC2 14 HIS B 242 ARG B 257 SER B 287 ILE B 290 SITE 4 AC2 14 ALA B 291 PO4 B 587 SITE 1 AC3 4 LYS A 195 LYS A 199 ARG A 218 IPX A 586 SITE 1 AC4 4 LYS B 195 LYS B 199 ARG B 218 IPX B 586 SITE 1 AC5 4 HIS B 9 LYS B 12 GLU B 57 LYS B 359 SITE 1 AC6 4 HIS A 9 LYS A 12 GLU A 57 LYS A 359 SITE 1 AC7 2 HIS A 9 ARG A 10 CRYST1 58.541 59.185 95.603 75.30 87.86 75.51 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017082 -0.004414 0.000493 0.00000 SCALE2 0.000000 0.017451 -0.004556 0.00000 SCALE3 0.000000 0.000000 0.010818 0.00000