PDB Short entry for 3LUP HEADER STRUCTURE GENOMICS, UNKNOWN FUNCTION 18-FEB-10 3LUP TITLE CRYSTAL STRUCTURE OF FATTY ACID BINDING DEGV FAMILY PROTEIN SAG1342 TITLE 2 FROM STREPTOCOCCUS AGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGV FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 208435; SOURCE 4 STRAIN: 2603V/R; SOURCE 5 GENE: SAG1342; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS PSI-2, MCSG, STRUCTURAL GENOMICS, FATTY ACID BINDING, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURE GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,R.WU,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 17-JUL-19 3LUP 1 REMARK LINK REVDAT 4 08-NOV-17 3LUP 1 REMARK REVDAT 3 22-FEB-12 3LUP 1 HEADER REVDAT 2 13-JUL-11 3LUP 1 VERSN REVDAT 1 02-MAR-10 3LUP 0 JRNL AUTH C.CHANG,R.WU,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF FATTY ACID BINDING DEGV FAMILY PROTEIN JRNL TITL 2 SAG1342 FROM STREPTOCOCCUS AGALACTIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 55.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.08000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : -2.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.368 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2224 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3007 ; 1.303 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;36.255 ;25.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;18.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1629 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1402 ; 0.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2250 ; 0.917 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 822 ; 1.495 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 2.566 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0827 40.8400 20.8019 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0380 REMARK 3 T33: 0.0681 T12: -0.0007 REMARK 3 T13: 0.0062 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.8583 L22: 0.7314 REMARK 3 L33: 5.5444 L12: -0.3124 REMARK 3 L13: 1.6449 L23: -0.4253 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.1017 S13: 0.0406 REMARK 3 S21: -0.1206 S22: 0.0122 S23: -0.0182 REMARK 3 S31: -0.1325 S32: -0.0056 S33: 0.1012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0446 34.5992 41.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0599 REMARK 3 T33: 0.0291 T12: -0.0011 REMARK 3 T13: -0.0105 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.5642 L22: 3.6012 REMARK 3 L33: 2.7344 L12: 0.2247 REMARK 3 L13: 0.8303 L23: -0.2433 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.1730 S13: -0.0094 REMARK 3 S21: 0.1242 S22: 0.0285 S23: -0.0239 REMARK 3 S31: 0.1209 S32: -0.0287 S33: 0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-09; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931; 0.97945 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MGCL2, 80 MM TRIS-CL, 24 % PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.77050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.10250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.77050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.10250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 THR A 36 OG1 CG2 REMARK 470 SER A 55 OG REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 154.93 -47.98 REMARK 500 GLU A 18 -80.52 -25.96 REMARK 500 ILE A 32 -128.33 -82.80 REMARK 500 TYR A 37 -53.97 -139.16 REMARK 500 ILE A 89 138.92 -34.11 REMARK 500 SER A 94 135.16 177.68 REMARK 500 PHE A 114 68.07 -115.18 REMARK 500 THR A 120 -168.46 -164.36 REMARK 500 SER A 121 -132.76 53.97 REMARK 500 ASN A 193 174.45 -53.53 REMARK 500 ASP A 255 54.54 -108.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC20804 RELATED DB: TARGETDB DBREF 3LUP A 1 282 UNP Q8DYY0 Q8DYY0_STRA5 1 282 SEQADV 3LUP SER A -2 UNP Q8DYY0 EXPRESSION TAG SEQADV 3LUP ASN A -1 UNP Q8DYY0 EXPRESSION TAG SEQADV 3LUP ALA A 0 UNP Q8DYY0 EXPRESSION TAG SEQRES 1 A 285 SER ASN ALA MSE LYS LEU ALA LEU ILE THR ASP THR SER SEQRES 2 A 285 ALA TYR LEU PRO GLU ALA ILE GLU ASN HIS GLU ASP VAL SEQRES 3 A 285 TYR VAL LEU ASP ILE PRO ILE ILE ILE ASP GLY LYS THR SEQRES 4 A 285 TYR ILE GLU GLY GLN ASN LEU THR LEU ASP GLN TYR TYR SEQRES 5 A 285 ASP LYS LEU ALA ALA SER LYS GLU LEU PRO LYS THR SER SEQRES 6 A 285 GLN PRO SER LEU ALA GLU LEU ASP ASP LEU LEU CYS GLN SEQRES 7 A 285 LEU GLU LYS GLU GLY TYR THR HIS VAL LEU GLY LEU PHE SEQRES 8 A 285 ILE ALA ALA GLY ILE SER GLY PHE TRP GLN ASN ILE GLN SEQRES 9 A 285 PHE LEU ILE GLU GLU HIS PRO ASN LEU THR ILE ALA PHE SEQRES 10 A 285 PRO ASP THR LYS ILE THR SER ALA PRO GLN GLY ASN LEU SEQRES 11 A 285 VAL ARG ASN ALA LEU MSE CYS SER ARG GLU GLY MSE ASP SEQRES 12 A 285 PHE ASP VAL ILE VAL ASN LYS ILE GLN SER GLN ILE GLU SEQRES 13 A 285 LYS ILE GLU GLY PHE ILE VAL VAL ASN ASP LEU ASN HIS SEQRES 14 A 285 LEU VAL LYS GLY GLY ARG LEU SER ASN GLY SER ALA ILE SEQRES 15 A 285 ILE GLY ASN LEU LEU SER ILE LYS PRO VAL LEU HIS PHE SEQRES 16 A 285 ASN GLU GLU GLY LYS ILE VAL VAL TYR GLU LYS VAL ARG SEQRES 17 A 285 THR GLU LYS LYS ALA LEU LYS ARG LEU ALA GLU ILE VAL SEQRES 18 A 285 LYS GLU MSE THR ALA ASP GLY GLU TYR ASP ILE ALA ILE SEQRES 19 A 285 ILE HIS SER ARG ALA GLN ASP LYS ALA GLU GLN LEU TYR SEQRES 20 A 285 ASN LEU LEU ALA LYS ALA GLY LEU LYS ASP ASP LEU GLU SEQRES 21 A 285 ILE VAL SER PHE GLY GLY VAL ILE ALA THR HIS LEU GLY SEQRES 22 A 285 GLU GLY ALA VAL ALA PHE GLY ILE THR PRO LYS ASN MODRES 3LUP MSE A 1 MET SELENOMETHIONINE MODRES 3LUP MSE A 133 MET SELENOMETHIONINE MODRES 3LUP MSE A 139 MET SELENOMETHIONINE MODRES 3LUP MSE A 221 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 133 8 HET MSE A 139 8 HET MSE A 221 8 HET ELA A 301 20 HET GOL A 302 6 HETNAM MSE SELENOMETHIONINE HETNAM ELA 9-OCTADECENOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ELA C18 H34 O2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *42(H2 O) HELIX 1 1 THR A 44 SER A 55 1 12 HELIX 2 2 SER A 65 GLU A 79 1 15 HELIX 3 3 ALA A 90 SER A 94 5 5 HELIX 4 4 GLY A 95 GLN A 101 1 7 HELIX 5 5 PHE A 102 HIS A 107 1 6 HELIX 6 6 THR A 120 ARG A 136 1 17 HELIX 7 7 ASP A 140 GLU A 153 1 14 HELIX 8 8 LEU A 164 GLY A 170 1 7 HELIX 9 9 ASN A 175 LEU A 184 1 10 HELIX 10 10 THR A 206 THR A 222 1 17 HELIX 11 11 ALA A 223 GLY A 225 5 3 HELIX 12 12 ALA A 236 ALA A 250 1 15 HELIX 13 13 LEU A 252 ASP A 254 5 3 HELIX 14 14 GLY A 262 GLY A 270 1 9 SHEET 1 A 4 VAL A 23 LEU A 26 0 SHEET 2 A 4 LEU A 3 ASP A 8 1 N LEU A 5 O TYR A 24 SHEET 3 A 4 HIS A 83 GLY A 86 1 O LEU A 85 N ALA A 4 SHEET 4 A 4 THR A 111 ALA A 113 1 O THR A 111 N VAL A 84 SHEET 1 B 2 ILE A 30 ILE A 31 0 SHEET 2 B 2 LYS A 60 THR A 61 -1 O LYS A 60 N ILE A 31 SHEET 1 C 6 ILE A 198 GLU A 202 0 SHEET 2 C 6 VAL A 189 PHE A 192 -1 N VAL A 189 O GLU A 202 SHEET 3 C 6 GLU A 156 VAL A 160 -1 N ILE A 159 O LEU A 190 SHEET 4 C 6 VAL A 274 PRO A 280 -1 O VAL A 274 N VAL A 160 SHEET 5 C 6 TYR A 227 HIS A 233 -1 N ASP A 228 O THR A 279 SHEET 6 C 6 LEU A 256 SER A 260 1 O GLU A 257 N ILE A 231 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LEU A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N CYS A 134 1555 1555 1.34 LINK C GLY A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ASP A 140 1555 1555 1.34 LINK C GLU A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N THR A 222 1555 1555 1.33 SITE 1 AC1 15 THR A 61 SER A 62 GLN A 63 ILE A 89 SITE 2 AC1 15 ILE A 93 SER A 94 THR A 120 ARG A 172 SITE 3 AC1 15 ILE A 198 PHE A 261 ILE A 265 HIS A 268 SITE 4 AC1 15 LEU A 269 PHE A 276 HOH A 318 SITE 1 AC2 4 VAL A 25 LEU A 26 ASP A 27 GLU A 68 CRYST1 39.321 84.205 87.541 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011423 0.00000