PDB Short entry for 3LW6 HEADER TRANSFERASE 23-FEB-10 3LW6 TITLE CRYSTAL STRUCTURE OF DROSOPHILA BETA1,4-GALACTOSYLTRANSFERASE-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-4-GALACTOSYLTRANSFERASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: FI08434P; COMPND 6 EC: 2.4.1.-, 2.4.1.133; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: 4-GALACTOSYLTRANSFERASE-7, BETA-4GALT7, BETA1, BETA4GALT7, SOURCE 6 BETA4GALT7-RA, DMEL_CG11780; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS PROTEIN-MN-UDP COMPLEX, GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.RAMAKRISHNAN,P.K.QASBA REVDAT 3 03-APR-24 3LW6 1 REMARK SEQADV LINK REVDAT 2 02-JUN-10 3LW6 1 JRNL REVDAT 1 16-MAR-10 3LW6 0 JRNL AUTH B.RAMAKRISHNAN,P.K.QASBA JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DROSOPHILA JRNL TITL 2 BETA1,4-GALACTOSYLTRANSFERASE-7. JRNL REF J.BIOL.CHEM. V. 285 15619 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20236943 JRNL DOI 10.1074/JBC.M109.099564 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2085 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2826 ; 1.991 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;31.158 ;23.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;12.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.163 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1596 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 1.212 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1949 ; 2.127 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 3.405 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 5.105 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: BROMINATED STRUCTURE WAS SOLVED USING SAD AT 2.0 A REMARK 200 RESOLUTION AND THE CORDINATED ARE USED AS THE STATING MODEL. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20 MG/ML PROTEIN WITH 33 MM UDP AND REMARK 280 66 MM MNCL2 WITH A PRECIPITATION SOLUTION CONTAINING 100 MM REMARK 280 TRIS.HCL, 1 M NACL, 15% MPD AND 5% PEG 4K., PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.82800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.91750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.24200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.91750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.41400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.91750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.24200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.91750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.91750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.41400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.82800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLN A 31 REMARK 465 GLN A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 PRO A 39 REMARK 465 MET A 40 REMARK 465 LEU A 41 REMARK 465 ILE A 42 REMARK 465 GLU A 43 REMARK 465 PHE A 44 REMARK 465 ASN A 45 REMARK 465 ILE A 46 REMARK 465 PRO A 47 REMARK 465 VAL A 48 REMARK 465 ASP A 49 REMARK 465 LEU A 50 REMARK 465 LYS A 51 REMARK 465 LEU A 52 REMARK 465 VAL A 53 REMARK 465 GLU A 54 REMARK 465 GLN A 55 REMARK 465 GLN A 56 REMARK 465 ASN A 57 REMARK 465 PRO A 58 REMARK 465 LYS A 59 REMARK 465 VAL A 60 REMARK 465 LYS A 61 REMARK 465 LEU A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 TYR A 66 REMARK 465 THR A 67 REMARK 465 PRO A 68 REMARK 465 MET A 69 REMARK 465 ASP A 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 143 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 ASN A 257 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 169 53.26 -94.07 REMARK 500 LEU A 209 -19.88 78.72 REMARK 500 PHE A 256 -146.66 55.18 REMARK 500 ASN A 257 53.98 -104.37 REMARK 500 ASP A 287 53.89 36.78 REMARK 500 GLN A 288 -0.38 77.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 314 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD2 REMARK 620 2 HIS A 241 NE2 92.5 REMARK 620 3 HIS A 243 ND1 85.7 96.3 REMARK 620 4 UDP A 312 O1B 177.0 90.4 93.3 REMARK 620 5 UDP A 312 O1A 90.7 174.6 88.3 86.5 REMARK 620 6 HOH A 386 O 89.0 87.6 173.5 91.8 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O0R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF BETA1,4- REMARK 900 GALACTOSYLTRANSFERASE-1 DBREF 3LW6 A 71 311 UNP Q9VBZ9 Q9VBZ9_DROME 71 311 SEQADV 3LW6 ALA A 25 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 SER A 26 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 27 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 THR A 28 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 29 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 30 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 31 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 32 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 33 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 34 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ARG A 35 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 36 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 SER A 37 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 38 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 39 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 40 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 41 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ILE A 42 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLU A 43 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PHE A 44 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASN A 45 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ILE A 46 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 47 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 48 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASP A 49 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 50 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 51 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 52 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 53 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLU A 54 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 55 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLN A 56 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASN A 57 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 58 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 59 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 VAL A 60 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LYS A 61 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 LEU A 62 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 63 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 GLY A 64 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ARG A 65 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 TYR A 66 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 THR A 67 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 PRO A 68 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 MET A 69 UNP Q9VBZ9 EXPRESSION TAG SEQADV 3LW6 ASP A 70 UNP Q9VBZ9 EXPRESSION TAG SEQRES 1 A 287 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 A 287 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 3 A 287 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 4 A 287 GLY ARG TYR THR PRO MET ASP GLY ALA SER VAL HIS LYS SEQRES 5 A 287 MET ALA LEU LEU VAL PRO PHE ARG ASP ARG PHE GLU GLU SEQRES 6 A 287 LEU LEU GLN PHE VAL PRO HIS MET THR ALA PHE LEU LYS SEQRES 7 A 287 ARG GLN GLY VAL ALA HIS HIS ILE PHE VAL LEU ASN GLN SEQRES 8 A 287 VAL ASP ARG PHE ARG PHE ASN ARG ALA SER LEU ILE ASN SEQRES 9 A 287 VAL GLY PHE GLN PHE ALA SER ASP VAL TYR ASP TYR ILE SEQRES 10 A 287 ALA MET HIS ASP VAL ASP LEU LEU PRO LEU ASN ASP ASN SEQRES 11 A 287 LEU LEU TYR GLU TYR PRO SER SER LEU GLY PRO LEU HIS SEQRES 12 A 287 ILE ALA GLY PRO LYS LEU HIS PRO LYS TYR HIS TYR ASP SEQRES 13 A 287 ASN PHE VAL GLY GLY ILE LEU LEU VAL ARG ARG GLU HIS SEQRES 14 A 287 PHE LYS GLN MET ASN GLY MET SER ASN GLN TYR TRP GLY SEQRES 15 A 287 TRP GLY LEU GLU ASP ASP GLU PHE PHE VAL ARG ILE ARG SEQRES 16 A 287 ASP ALA GLY LEU GLN VAL THR ARG PRO GLN ASN ILE LYS SEQRES 17 A 287 THR GLY THR ASN ASP THR PHE SER HIS ILE HIS ASN ARG SEQRES 18 A 287 TYR HIS ARG LYS ARG ASP THR GLN LYS CYS PHE ASN GLN SEQRES 19 A 287 LYS GLU MET THR ARG LYS ARG ASP HIS LYS THR GLY LEU SEQRES 20 A 287 ASP ASN VAL LYS TYR LYS ILE LEU LYS VAL HIS GLU MET SEQRES 21 A 287 LEU ILE ASP GLN VAL PRO VAL THR ILE LEU ASN ILE LEU SEQRES 22 A 287 LEU ASP CYS ASP VAL ASN LYS THR PRO TRP CYS ASP CYS SEQRES 23 A 287 SER HET UDP A 312 25 HET MPD A 313 8 HET MN A 314 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MN MANGANESE (II) ION FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 MPD C6 H14 O2 FORMUL 4 MN MN 2+ FORMUL 5 HOH *224(H2 O) HELIX 1 1 ARG A 86 GLN A 104 1 19 HELIX 2 2 ASN A 122 ALA A 134 1 13 HELIX 3 3 ARG A 191 MET A 197 1 7 HELIX 4 4 LEU A 209 ALA A 221 1 13 HELIX 5 5 ASN A 257 ARG A 263 1 7 HELIX 6 6 GLY A 270 VAL A 274 5 5 HELIX 7 7 THR A 305 ASP A 309 5 5 SHEET 1 A 7 LEU A 166 HIS A 167 0 SHEET 2 A 7 ILE A 186 ARG A 190 -1 O LEU A 188 N LEU A 166 SHEET 3 A 7 TYR A 140 HIS A 144 -1 N MET A 143 O LEU A 187 SHEET 4 A 7 LYS A 76 PHE A 83 1 N LEU A 80 O ALA A 142 SHEET 5 A 7 ALA A 107 GLN A 115 1 O LEU A 113 N VAL A 81 SHEET 6 A 7 VAL A 289 LEU A 298 1 O THR A 292 N VAL A 112 SHEET 7 A 7 TYR A 276 ILE A 286 -1 N LYS A 277 O LEU A 297 SHEET 1 B 2 LEU A 148 PRO A 150 0 SHEET 2 B 2 PHE A 239 HIS A 241 -1 O SER A 240 N LEU A 149 SSBOND 1 CYS A 255 CYS A 310 1555 1555 2.08 SSBOND 2 CYS A 300 CYS A 308 1555 1555 2.10 LINK OD2 ASP A 147 MN MN A 314 1555 1555 2.12 LINK NE2 HIS A 241 MN MN A 314 1555 1555 2.26 LINK ND1 HIS A 243 MN MN A 314 1555 1555 2.25 LINK O1B UDP A 312 MN MN A 314 1555 1555 2.00 LINK O1A UDP A 312 MN MN A 314 1555 1555 2.20 LINK MN MN A 314 O HOH A 386 1555 1555 2.32 SITE 1 AC1 20 HOH A 7 PRO A 82 PHE A 83 ARG A 84 SITE 2 AC1 20 ARG A 86 PHE A 121 ASP A 145 VAL A 146 SITE 3 AC1 20 ASP A 147 TYR A 177 TRP A 207 HIS A 241 SITE 4 AC1 20 HIS A 243 ARG A 250 MPD A 313 MN A 314 SITE 5 AC1 20 HOH A 328 HOH A 349 HOH A 372 HOH A 421 SITE 1 AC2 12 HOH A 22 ARG A 123 TYR A 177 PHE A 182 SITE 2 AC2 12 TRP A 207 GLY A 208 GLU A 210 ASP A 211 SITE 3 AC2 12 UDP A 312 HOH A 329 HOH A 483 HOH A 498 SITE 1 AC3 5 ASP A 147 HIS A 241 HIS A 243 UDP A 312 SITE 2 AC3 5 HOH A 386 CRYST1 81.835 81.835 133.656 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007482 0.00000