PDB Short entry for 3LYI HEADER TRANSCRIPTION 26-FEB-10 3LYI TITLE PWWP DOMAIN OF HUMAN BROMODOMAIN-CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PWWP DOMAIN, RESIDUES 925-1049; COMPND 5 SYNONYM: BR140-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD1, BRL, BRPF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS HISTONE H3 ACETYLATION, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 BROMODOMAIN, CHROMATIN REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.LAM,H.ZENG,S.NI,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 22-NOV-23 3LYI 1 REMARK REVDAT 5 06-SEP-23 3LYI 1 REMARK SEQADV REVDAT 4 08-NOV-17 3LYI 1 REMARK REVDAT 3 21-MAR-12 3LYI 1 JRNL VERSN REVDAT 2 29-JUN-11 3LYI 1 JRNL REVDAT 1 16-MAR-10 3LYI 0 JRNL AUTH H.WU,H.ZENG,R.LAM,W.TEMPEL,M.F.AMAYA,C.XU,L.DOMBROVSKI, JRNL AUTH 2 W.QIU,Y.WANG,J.MIN JRNL TITL STRUCTURAL AND HISTONE BINDING ABILITY CHARACTERIZATIONS OF JRNL TITL 2 HUMAN PWWP DOMAINS. JRNL REF PLOS ONE V. 6 18919 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21720545 JRNL DOI 10.1371/JOURNAL.PONE.0018919 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 16421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1052 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.125 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1847 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2494 ; 1.359 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;36.106 ;23.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 343 ;16.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1344 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 0.686 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1834 ; 1.248 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 717 ; 1.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 660 ; 2.893 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 928 A 1047 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2230 7.1450 -27.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1200 REMARK 3 T33: 0.1051 T12: 0.0079 REMARK 3 T13: 0.0263 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.3321 L22: 2.7660 REMARK 3 L33: 0.9082 L12: -0.1990 REMARK 3 L13: -0.2583 L23: -0.2578 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0805 S13: -0.0129 REMARK 3 S21: 0.1165 S22: 0.0244 S23: 0.1593 REMARK 3 S31: -0.0071 S32: -0.0455 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 931 B 1048 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1250 25.2470 -6.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.3566 T22: 0.4328 REMARK 3 T33: 0.2198 T12: -0.1260 REMARK 3 T13: 0.1498 T23: -0.3193 REMARK 3 L TENSOR REMARK 3 L11: 6.8521 L22: 5.5210 REMARK 3 L33: 2.5131 L12: -3.5722 REMARK 3 L13: -0.2285 L23: 2.4657 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.2297 S13: 0.4019 REMARK 3 S21: 0.1896 S22: -0.5810 S23: 0.2605 REMARK 3 S31: 0.3083 S32: -0.3269 S33: 0.5138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: WITH REMARK 3 TLS ADDED. REMARK 3 UNKNOWN LIGAND WAS NOT MODELED. REMARK 4 REMARK 4 3LYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3L42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000-MME, 0.15M KBR, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.51450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.35600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.04250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.35600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.51450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.04250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 924 REMARK 465 SER A 925 REMARK 465 VAL A 926 REMARK 465 LEU A 927 REMARK 465 GLY A 1048 REMARK 465 GLU A 1049 REMARK 465 GLY B 924 REMARK 465 SER B 925 REMARK 465 VAL B 926 REMARK 465 LEU B 927 REMARK 465 GLU B 928 REMARK 465 PRO B 929 REMARK 465 LEU B 930 REMARK 465 MET B 952 REMARK 465 PRO B 953 REMARK 465 ARG B 954 REMARK 465 VAL B 955 REMARK 465 PRO B 956 REMARK 465 GLY B 957 REMARK 465 HIS B 958 REMARK 465 HIS B 959 REMARK 465 ASN B 960 REMARK 465 GLY B 961 REMARK 465 VAL B 962 REMARK 465 THR B 963 REMARK 465 ILE B 964 REMARK 465 GLU B 1049 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A1047 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B1030 CG CD CE NZ REMARK 470 ARG B1045 CG CD NE CZ NH1 NH2 REMARK 470 HIS B1047 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 999 O HOH A 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 931 -67.92 -143.89 REMARK 500 PHE A 992 33.29 -92.06 REMARK 500 ARG A 996 71.90 49.68 REMARK 500 PRO B 950 -30.93 -39.68 REMARK 500 PHE B 992 36.17 -82.08 REMARK 500 HIS B1047 33.77 -98.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCS A 1500 DBREF 3LYI A 925 1049 UNP O95696 BRD1_HUMAN 925 1049 DBREF 3LYI B 925 1049 UNP O95696 BRD1_HUMAN 925 1049 SEQADV 3LYI GLY A 924 UNP O95696 EXPRESSION TAG SEQADV 3LYI GLY B 924 UNP O95696 EXPRESSION TAG SEQRES 1 A 126 GLY SER VAL LEU GLU PRO LEU LYS VAL VAL TRP ALA LYS SEQRES 2 A 126 CYS SER GLY TYR PRO SER TYR PRO ALA LEU ILE ILE ASP SEQRES 3 A 126 PRO LYS MET PRO ARG VAL PRO GLY HIS HIS ASN GLY VAL SEQRES 4 A 126 THR ILE PRO ALA PRO PRO LEU ASP VAL LEU LYS ILE GLY SEQRES 5 A 126 GLU HIS MET GLN THR LYS SER ASP GLU LYS LEU PHE LEU SEQRES 6 A 126 VAL LEU PHE PHE ASP ASN LYS ARG SER TRP GLN TRP LEU SEQRES 7 A 126 PRO LYS SER LYS MET VAL PRO LEU GLY ILE ASP GLU THR SEQRES 8 A 126 ILE ASP LYS LEU LYS MET MET GLU GLY ARG ASN SER SER SEQRES 9 A 126 ILE ARG LYS ALA VAL ARG ILE ALA PHE ASP ARG ALA MET SEQRES 10 A 126 ASN HIS LEU SER ARG VAL HIS GLY GLU SEQRES 1 B 126 GLY SER VAL LEU GLU PRO LEU LYS VAL VAL TRP ALA LYS SEQRES 2 B 126 CYS SER GLY TYR PRO SER TYR PRO ALA LEU ILE ILE ASP SEQRES 3 B 126 PRO LYS MET PRO ARG VAL PRO GLY HIS HIS ASN GLY VAL SEQRES 4 B 126 THR ILE PRO ALA PRO PRO LEU ASP VAL LEU LYS ILE GLY SEQRES 5 B 126 GLU HIS MET GLN THR LYS SER ASP GLU LYS LEU PHE LEU SEQRES 6 B 126 VAL LEU PHE PHE ASP ASN LYS ARG SER TRP GLN TRP LEU SEQRES 7 B 126 PRO LYS SER LYS MET VAL PRO LEU GLY ILE ASP GLU THR SEQRES 8 B 126 ILE ASP LYS LEU LYS MET MET GLU GLY ARG ASN SER SER SEQRES 9 B 126 ILE ARG LYS ALA VAL ARG ILE ALA PHE ASP ARG ALA MET SEQRES 10 B 126 ASN HIS LEU SER ARG VAL HIS GLY GLU HET OCS A1500 10 HETNAM OCS CYSTEINESULFONIC ACID FORMUL 3 OCS C3 H7 N O5 S FORMUL 4 HOH *78(H2 O) HELIX 1 1 PRO A 968 LYS A 981 1 14 HELIX 2 2 ASP A 1012 MET A 1021 1 10 HELIX 3 3 ASN A 1025 VAL A 1046 1 22 HELIX 4 4 PRO B 968 THR B 980 1 13 HELIX 5 5 ASP B 1012 MET B 1020 1 9 HELIX 6 6 ASN B 1025 HIS B 1047 1 23 SHEET 1 A 5 TRP A 998 PRO A1002 0 SHEET 2 A 5 LEU A 986 PHE A 991 -1 N PHE A 987 O LEU A1001 SHEET 3 A 5 TYR A 943 ILE A 947 -1 N LEU A 946 O LEU A 990 SHEET 4 A 5 VAL A 932 ALA A 935 -1 N ALA A 935 O TYR A 943 SHEET 5 A 5 MET A1006 PRO A1008 -1 O VAL A1007 N TRP A 934 SHEET 1 B 5 TRP B 998 PRO B1002 0 SHEET 2 B 5 LEU B 986 PHE B 991 -1 N PHE B 987 O LEU B1001 SHEET 3 B 5 TYR B 943 ILE B 948 -1 N ILE B 948 O LEU B 988 SHEET 4 B 5 VAL B 932 ALA B 935 -1 N VAL B 933 O ALA B 945 SHEET 5 B 5 MET B1006 PRO B1008 -1 O VAL B1007 N TRP B 934 SITE 1 AC1 5 HOH A 59 LYS A 973 GLN A 999 ASN A1025 SITE 2 AC1 5 SER A1026 CRYST1 45.029 46.085 130.712 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007650 0.00000