PDB Short entry for 3LYQ HEADER RHOA-BINDING PROTEIN 28-FEB-10 3LYQ TITLE CRYSTAL STRUCTURE OF IPGB2 FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: IPGB2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IPGB2, PROBABLY SECRETED BY THE MXI-SPA SECRETION MACHINERY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-M 41 KEYWDS IPGB2, GEF, WXXXE, TTSS EFFECTOR PROTEIN, BACTERIAL GEF, CYTOSKELETON KEYWDS 2 DYNAMICS, RHOA-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.U.KLINK,S.BARDEN,T.V.HEIDLER,C.BORCHERS,M.LADWEIN,T.E.B.STRADAL, AUTHOR 2 K.ROTTNER,D.W.HEINZ REVDAT 4 20-MAR-24 3LYQ 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3LYQ 1 VERSN REVDAT 2 02-JUN-10 3LYQ 1 JRNL REVDAT 1 31-MAR-10 3LYQ 0 JRNL AUTH B.U.KLINK,S.BARDEN,T.V.HEIDLER,C.BORCHERS,M.LADWEIN, JRNL AUTH 2 T.E.B.STRADAL,K.ROTTNER,D.W.HEINZ JRNL TITL STRUCTURE OF SHIGELLA IPGB2 IN COMPLEX WITH HUMAN RHOA: JRNL TITL 2 IMPLICATIONS FOR THE MECHANISM OF BACTERIAL GEF-MIMICRY JRNL REF J.BIOL.CHEM. V. 285 17197 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20363740 JRNL DOI 10.1074/JBC.M110.107953 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 24089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.281 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3044 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4075 ; 1.694 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 5.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;36.742 ;25.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;19.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2234 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1842 ; 0.825 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2989 ; 1.576 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 3.825 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6950 -14.5090 10.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.1620 REMARK 3 T33: 0.2871 T12: -0.0392 REMARK 3 T13: -0.0237 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.4177 L22: 0.5786 REMARK 3 L33: 0.1889 L12: 0.0559 REMARK 3 L13: 0.1507 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.1599 S13: 0.1188 REMARK 3 S21: 0.1518 S22: -0.0065 S23: 0.1420 REMARK 3 S31: 0.0063 S32: -0.1396 S33: -0.0576 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2870 -23.6510 35.6110 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.3741 REMARK 3 T33: 0.4399 T12: 0.0922 REMARK 3 T13: -0.0835 T23: 0.2361 REMARK 3 L TENSOR REMARK 3 L11: 3.1222 L22: 2.1670 REMARK 3 L33: 8.8205 L12: -1.0291 REMARK 3 L13: -0.1867 L23: -2.5460 REMARK 3 S TENSOR REMARK 3 S11: -0.3821 S12: -0.7701 S13: -0.6169 REMARK 3 S21: -0.0460 S22: -0.1621 S23: -0.2865 REMARK 3 S31: 0.5473 S32: 0.5769 S33: 0.5442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9130 -17.1900 20.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2467 REMARK 3 T33: 0.3541 T12: -0.0348 REMARK 3 T13: -0.0179 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 1.8606 L22: 2.1000 REMARK 3 L33: 2.8367 L12: -0.0278 REMARK 3 L13: -1.4914 L23: 0.5069 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.6170 S13: -0.1174 REMARK 3 S21: 0.5338 S22: -0.1237 S23: 0.0435 REMARK 3 S31: 0.0565 S32: 0.3409 S33: 0.1811 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5460 -22.7730 -6.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.2394 REMARK 3 T33: 0.3448 T12: -0.0519 REMARK 3 T13: -0.0332 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.2441 L22: 1.3416 REMARK 3 L33: 0.8780 L12: -0.7970 REMARK 3 L13: -0.2830 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.1149 S13: -0.1129 REMARK 3 S21: 0.0225 S22: -0.0315 S23: -0.1133 REMARK 3 S31: 0.1555 S32: 0.0891 S33: -0.0367 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5880 -26.5890 -32.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.3726 T22: 0.2586 REMARK 3 T33: 0.4610 T12: 0.1716 REMARK 3 T13: -0.2909 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 3.2096 L22: 1.9523 REMARK 3 L33: 8.6731 L12: 0.7433 REMARK 3 L13: 0.2734 L23: -1.1604 REMARK 3 S TENSOR REMARK 3 S11: 0.2867 S12: -0.0687 S13: 0.3147 REMARK 3 S21: -0.5986 S22: -0.2178 S23: 0.8566 REMARK 3 S31: -0.3609 S32: -0.6172 S33: -0.0689 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6000 -28.3220 -17.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2245 REMARK 3 T33: 0.3148 T12: 0.0265 REMARK 3 T13: -0.0616 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.7138 L22: 2.1374 REMARK 3 L33: 3.0570 L12: -0.2147 REMARK 3 L13: -1.2445 L23: 1.2361 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: 0.5312 S13: -0.0091 REMARK 3 S21: -0.4319 S22: -0.1372 S23: 0.1321 REMARK 3 S31: -0.2419 S32: -0.1662 S33: 0.0434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 RESIDUAL ONLY; REMARK 3 AN ALMOST SPHERICAL COMPLEX OF LIGANDS MEDIATES A STRONG REMARK 3 CRYSTALLOGRAPHIC CONTACT BETWEEN FOUR DIFFERENT IPGB2 MOLECULES. REMARK 3 THE CLUSTER CONTAINS AT LEAST TWO IRON ATOMS WITH A FE-FE-DISTANCE REMARK 3 IDENTICAL TO THE DISTANCE IN MU-OXO-DIIRON. AN INTERPRETATION AS A REMARK 3 FE-CITRATE CLUSTER CONTAINING FOUR CITRATE MOLECULES LOWERS BOTH REMARK 3 FREE AND WORKING R FACTOR SIGNIFICANTLY. HOWEVER, THE PRECISE REMARK 3 ARCHITECTURE OF THE CLUSTER USED FOR THIS INTERPRETATION (CHAIN A REMARK 3 OR B) ONLY REPRESENTS THE "BEST COMPROMISE". LIGANDS IN CHAIN A OR REMARK 3 B MAY NOT BE COMPLETELY CORRECT, CONTAIN UNREALISTIC ATOM REMARK 3 DISTANCES AND DO NOT PERFECTLY DESCRIBE THE ELECTRON DENSITY. REMARK 4 REMARK 4 3LYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08; 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 22.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, DM, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (W/W) PEG 3350, 7% ISOPROPANOL, REMARK 280 10MM FECL3, 100MM TRISODIUM CITRATE/CITRIC ACID PH 5.5, 10MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.04000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO BIOLOGICAL UNITS, WHICH REMARK 300 INTERACT VIA DOMAIN-SWAPPING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 186 REMARK 465 PRO A 187 REMARK 465 PHE A 188 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ASP B 0 REMARK 465 MET B 1 REMARK 465 PHE B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OA2 FLC A 301 FE2 FEO A 401 1.11 REMARK 500 CAC FLC A 301 FE2 FEO A 401 1.61 REMARK 500 CA FLC A 301 O FEO A 401 1.67 REMARK 500 OA2 FLC A 301 O FEO A 401 1.85 REMARK 500 CAC FLC A 301 O FEO A 401 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OB1 FLC A 301 OG2 FLC B 302 8555 1.82 REMARK 500 OA2 FLC A 301 FE1 FEO A 401 8555 1.83 REMARK 500 FE1 FEO A 401 OHB FLC B 302 8555 1.87 REMARK 500 OG1 FLC B 302 OG1 FLC B 302 8555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 135 CG GLU B 135 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 145.14 -175.52 REMARK 500 ILE A 59 -18.88 69.87 REMARK 500 ASP B 92 -70.14 -42.71 REMARK 500 VAL B 165 -61.90 -125.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 301 OB1 REMARK 620 2 FEO A 401 O 81.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 301 OA1 REMARK 620 2 FEO A 401 O 94.5 REMARK 620 3 FLC B 302 OA2 72.5 155.9 REMARK 620 4 FLC B 302 OHB 133.3 105.9 97.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LW8 RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX A) REMARK 900 RELATED ID: 3LWN RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX B) REMARK 900 RELATED ID: 3LXR RELATED DB: PDB REMARK 900 IPGB2 IN COMPLEX WITH HUMAN RHOA (COMPLEX C) DBREF 3LYQ A 1 188 UNP Q9AJW7 Q9AJW7_SHIFL 1 188 DBREF 3LYQ B 1 188 UNP Q9AJW7 Q9AJW7_SHIFL 1 188 SEQADV 3LYQ GLY A -3 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ALA A -2 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ MET A -1 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ASP A 0 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ GLY B -3 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ALA B -2 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ MET B -1 UNP Q9AJW7 EXPRESSION TAG SEQADV 3LYQ ASP B 0 UNP Q9AJW7 EXPRESSION TAG SEQRES 1 A 192 GLY ALA MET ASP MET LEU GLY THR SER PHE ASN ASN PHE SEQRES 2 A 192 GLY ILE SER LEU SER HIS LYS ARG TYR PHE SER GLY LYS SEQRES 3 A 192 VAL ASP GLU ILE ILE ARG CYS THR MET GLY LYS ARG ILE SEQRES 4 A 192 VAL LYS ILE SER SER THR LYS ILE ASN THR SER ILE LEU SEQRES 5 A 192 SER SER VAL SER GLU GLN ILE GLY GLU ASN ILE THR ASP SEQRES 6 A 192 TRP LYS ASN ASP GLU LYS LYS VAL TYR VAL SER ARG VAL SEQRES 7 A 192 VAL ASN GLN CYS ILE ASP LYS PHE CYS ALA GLU HIS SER SEQRES 8 A 192 ARG LYS ILE GLY ASP ASN LEU ARG LYS GLN ILE PHE LYS SEQRES 9 A 192 GLN VAL GLU LYS ASP TYR ARG ILE SER LEU ASP ILE ASN SEQRES 10 A 192 ALA ALA GLN SER SER ILE ASN HIS LEU VAL SER GLY SER SEQRES 11 A 192 SER TYR PHE LYS LYS LYS MET ASP GLU LEU CYS GLU GLY SEQRES 12 A 192 MET ASN ARG SER VAL LYS ASN ASP THR THR SER ASN VAL SEQRES 13 A 192 ALA ASN LEU ILE SER ASP GLN PHE PHE GLU LYS ASN VAL SEQRES 14 A 192 GLN TYR ILE ASP LEU LYS LYS LEU ARG GLY ASN MET SER SEQRES 15 A 192 ASP TYR ILE THR ASN LEU GLU SER PRO PHE SEQRES 1 B 192 GLY ALA MET ASP MET LEU GLY THR SER PHE ASN ASN PHE SEQRES 2 B 192 GLY ILE SER LEU SER HIS LYS ARG TYR PHE SER GLY LYS SEQRES 3 B 192 VAL ASP GLU ILE ILE ARG CYS THR MET GLY LYS ARG ILE SEQRES 4 B 192 VAL LYS ILE SER SER THR LYS ILE ASN THR SER ILE LEU SEQRES 5 B 192 SER SER VAL SER GLU GLN ILE GLY GLU ASN ILE THR ASP SEQRES 6 B 192 TRP LYS ASN ASP GLU LYS LYS VAL TYR VAL SER ARG VAL SEQRES 7 B 192 VAL ASN GLN CYS ILE ASP LYS PHE CYS ALA GLU HIS SER SEQRES 8 B 192 ARG LYS ILE GLY ASP ASN LEU ARG LYS GLN ILE PHE LYS SEQRES 9 B 192 GLN VAL GLU LYS ASP TYR ARG ILE SER LEU ASP ILE ASN SEQRES 10 B 192 ALA ALA GLN SER SER ILE ASN HIS LEU VAL SER GLY SER SEQRES 11 B 192 SER TYR PHE LYS LYS LYS MET ASP GLU LEU CYS GLU GLY SEQRES 12 B 192 MET ASN ARG SER VAL LYS ASN ASP THR THR SER ASN VAL SEQRES 13 B 192 ALA ASN LEU ILE SER ASP GLN PHE PHE GLU LYS ASN VAL SEQRES 14 B 192 GLN TYR ILE ASP LEU LYS LYS LEU ARG GLY ASN MET SER SEQRES 15 B 192 ASP TYR ILE THR ASN LEU GLU SER PRO PHE HET FLC A 301 13 HET FEO A 401 3 HET FEO A 402 3 HET FLC B 302 13 HET FLC B 303 13 HETNAM FLC CITRATE ANION HETNAM FEO MU-OXO-DIIRON FORMUL 3 FLC 3(C6 H5 O7 3-) FORMUL 4 FEO 2(FE2 O) FORMUL 8 HOH *106(H2 O) HELIX 1 1 SER A 40 GLY A 56 1 17 HELIX 2 2 ILE A 59 ALA A 84 1 26 HELIX 3 3 GLY A 91 TYR A 106 1 16 HELIX 4 4 SER A 118 SER A 126 1 9 HELIX 5 5 SER A 126 CYS A 137 1 12 HELIX 6 6 ASN A 141 VAL A 165 1 25 HELIX 7 7 ASP A 169 ASN A 183 1 15 HELIX 8 8 SER B 40 GLN B 54 1 15 HELIX 9 9 ASN B 58 HIS B 86 1 29 HELIX 10 10 GLY B 91 TYR B 106 1 16 HELIX 11 11 SER B 118 SER B 126 1 9 HELIX 12 12 SER B 126 CYS B 137 1 12 HELIX 13 13 ASN B 141 VAL B 165 1 25 HELIX 14 14 ASP B 169 MET B 177 1 9 HELIX 15 15 ILE B 181 SER B 186 1 6 SHEET 1 A 4 THR A 4 PHE A 6 0 SHEET 2 A 4 PHE A 9 ARG A 17 -1 O ILE A 11 N THR A 4 SHEET 3 A 4 VAL A 23 MET A 31 -1 O THR A 30 N GLY A 10 SHEET 4 A 4 ILE B 35 SER B 39 -1 O ILE B 38 N ILE A 27 SHEET 1 B 4 ILE A 35 SER A 39 0 SHEET 2 B 4 VAL B 23 MET B 31 -1 O ILE B 27 N ILE A 38 SHEET 3 B 4 PHE B 9 ARG B 17 -1 N GLY B 10 O THR B 30 SHEET 4 B 4 THR B 4 PHE B 6 -1 N THR B 4 O ILE B 11 LINK OB1 FLC A 301 FE1 FEO A 401 1555 1555 1.80 LINK OA1 FLC A 301 FE2 FEO A 401 1555 1555 2.27 LINK FE2 FEO A 401 OA2 FLC B 302 1555 1555 2.04 LINK FE2 FEO A 401 OHB FLC B 302 1555 1555 2.12 SITE 1 AC1 6 ARG A 142 FEO A 401 ASN B 141 ARG B 142 SITE 2 AC1 6 SER B 143 FLC B 302 SITE 1 AC2 2 FLC A 301 FLC B 302 SITE 1 AC3 2 ASN A 93 ASN B 93 SITE 1 AC4 6 ASN A 141 ARG A 142 FLC A 301 FEO A 401 SITE 2 AC4 6 ASN B 141 ARG B 142 SITE 1 AC5 4 ARG A 28 LYS A 37 ARG B 28 LYS B 37 CRYST1 114.080 114.080 88.770 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011265 0.00000