PDB Short entry for 3LZR HEADER TRANSPORT PROTEIN 01-MAR-10 3LZR TITLE CRYSTAL STRUCTURE ANALYSIS OF MANGANESE TREATED P19 PROTEIN FROM TITLE 2 CAMPYLOBACTER JEJUNI AT 2.73 A AT PH 9 AND MANGANESE PEAK WAVELENGTH TITLE 3 (1.893 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: P19 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 22-179; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 354242; SOURCE 4 STRAIN: 81-176; SOURCE 5 GENE: CJJ81176_1650, GENE CJ81176_1659; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19 KEYWDS COPPER BINDING, IRON TRANSPORT, IRON UPTAKE, P19 DELITION, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.I.DOUKOV,A.C.K.CHAN,M.SCOFIELD,A.B.RAMIN,S.A.L.TOM-YEW,M.E.P.MURPHY REVDAT 4 03-APR-24 3LZR 1 REMARK REVDAT 3 21-FEB-24 3LZR 1 REMARK SEQADV LINK REVDAT 2 25-AUG-10 3LZR 1 JRNL REVDAT 1 21-JUL-10 3LZR 0 JRNL AUTH A.C.CHAN,T.I.DOUKOV,M.SCOFIELD,S.A.TOM-YEW,A.B.RAMIN, JRNL AUTH 2 J.K.MACKICHAN,E.C.GAYNOR,M.E.MURPHY JRNL TITL STRUCTURE AND FUNCTION OF P19, A HIGH-AFFINITY IRON JRNL TITL 2 TRANSPORTER OF THE HUMAN PATHOGEN CAMPYLOBACTER JEJUNI. JRNL REF J.MOL.BIOL. V. 401 590 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20600116 JRNL DOI 10.1016/J.JMB.2010.06.038 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 7400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2470 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.412 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.298 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2565 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1755 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3475 ; 0.910 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4300 ; 1.489 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 4.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;36.550 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;11.600 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2877 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1573 ; 0.515 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 647 ; 0.051 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2523 ; 1.044 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 992 ; 1.535 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 951 ; 2.581 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2056 ; 0.52 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2056 ; 0.92 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2368 12.1731 31.0875 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0958 REMARK 3 T33: 0.0658 T12: 0.0062 REMARK 3 T13: 0.0094 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0945 L22: 0.3169 REMARK 3 L33: 2.2138 L12: -0.0489 REMARK 3 L13: -0.9871 L23: 0.4807 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.0232 S13: -0.0521 REMARK 3 S21: 0.0031 S22: -0.0478 S23: 0.0115 REMARK 3 S31: -0.0304 S32: -0.1115 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1028 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9650 10.7123 30.1171 REMARK 3 T TENSOR REMARK 3 T11: 0.0525 T22: 0.1663 REMARK 3 T33: 0.1487 T12: 0.0416 REMARK 3 T13: -0.0430 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.1246 L22: 0.9067 REMARK 3 L33: 2.3646 L12: 0.4248 REMARK 3 L13: -0.5610 L23: 1.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.0943 S13: -0.0483 REMARK 3 S21: 0.0376 S22: 0.0137 S23: -0.0049 REMARK 3 S31: 0.1586 S32: -0.0943 S33: 0.0589 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6582 22.2643 4.9558 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.2103 REMARK 3 T33: 0.0633 T12: 0.0125 REMARK 3 T13: 0.0152 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.7760 L22: 0.5513 REMARK 3 L33: 3.0343 L12: 0.2374 REMARK 3 L13: 1.0562 L23: 0.3192 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: 0.1918 S13: 0.0403 REMARK 3 S21: 0.0499 S22: 0.0364 S23: 0.0530 REMARK 3 S31: -0.0558 S32: 0.0424 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1028 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2695 25.1062 6.3906 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.3781 REMARK 3 T33: 0.0764 T12: 0.0333 REMARK 3 T13: -0.0240 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.8158 L22: 0.4028 REMARK 3 L33: 0.8331 L12: 0.1006 REMARK 3 L13: 0.8227 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.1416 S13: -0.0745 REMARK 3 S21: 0.0172 S22: 0.1525 S23: -0.0111 REMARK 3 S31: -0.0253 S32: 0.1202 S33: -0.1060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000057927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.893 REMARK 200 MONOCHROMATOR : SI 111 MONOCHROMATOR REMARK 200 OPTICS : RH COATED FLAT MIRROR, TOROIDAL REMARK 200 FOCUSING MIRROR, SI 111 REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 19.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.01500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 61.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 47.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: P6222 INCOMPLETE SEMAD MODEL AT 2.8 ANGS REMARK 200 RESOLUTION. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% POLYETHYLENE GLYCOL (PEG) 250, 0.1 REMARK 280 M CHES (2-(N-CYCLOHEXYLAMINO) ETHANE SULFONIC ACID) BUFFER PH REMARK 280 9.0, CRYO FROZEN WITHOUT ANY ADDITION, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.24950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.89850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.24950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.89850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 102 -80.58 -110.53 REMARK 500 MET B 102 -81.67 -111.01 REMARK 500 PHE B 110 50.99 -103.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 OE2 REMARK 620 2 GLU A 44 OE1 111.5 REMARK 620 3 ASP A 92 OD2 72.4 130.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 MET A 88 SD 118.8 REMARK 620 3 HIS A 95 NE2 117.7 116.2 REMARK 620 4 HIS B 132 NE2 105.7 94.1 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 132 NE2 REMARK 620 2 HIS B 42 NE2 112.8 REMARK 620 3 MET B 88 SD 91.8 104.7 REMARK 620 4 HIS B 95 NE2 99.8 134.6 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O6C RELATED DB: PDB REMARK 900 STRUCTURE OF SELENOMETHIONYL RTP34 FROM TREPONEMA PALLIDUM REMARK 900 RELATED ID: 2O6D RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE RTP34 FROM TREPONEMA PALLIDUM REMARK 900 RELATED ID: 2O6E RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE RTP34 FROM TREPONEMA PALLIDUM FROM ZINC-SOAKED REMARK 900 CRYSTALS REMARK 900 RELATED ID: 2O6F RELATED DB: PDB REMARK 900 STRUCTURE OF METAL- FREE RTP34 FROM TREPONEMA PALLIDUM REMARK 900 RELATED ID: 3LZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE COPPER-RECONSTITUTED P19 PROTEIN REMARK 900 FROM CAMPYLOBACTER JEJUNI AT 1.65 A AT PH 10.0 REMARK 900 RELATED ID: 3LZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE 'AS-ISOLATED' P19 PROTEIN FROM REMARK 900 CAMPYLOBACTER JEJUNI AT 1.65 A AT PH 9 REMARK 900 RELATED ID: 3LZQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF MANGANESE TREATED P19 PROTEIN FROM REMARK 900 CAMPYLOBACTER JEJUNI AT 1.41 A AT PH 9 REMARK 900 RELATED ID: 3LZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE AS-ISOLATED P19 PROTEIN FROM REMARK 900 CAMPYLOBACTER JEJUNI AT 1.45 A AT PH 9.0 REMARK 900 RELATED ID: 3LZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE APO P19 PROTEIN FROM REMARK 900 CAMPYLOBACTER JEJUNI AT 1.59 A AT PH 9 DBREF 3LZR A 2 159 UNP A1W1R1 A1W1R1_CAMJJ 22 179 DBREF 3LZR B 2 159 UNP A1W1R1 A1W1R1_CAMJJ 22 179 SEQADV 3LZR GLY A 1 UNP A1W1R1 EXPRESSION TAG SEQADV 3LZR GLY B 1 UNP A1W1R1 EXPRESSION TAG SEQRES 1 A 159 GLY GLY GLU VAL PRO ILE GLY ASP PRO LYS GLU LEU ASN SEQRES 2 A 159 GLY MET GLU ILE ALA ALA VAL TYR LEU GLN PRO ILE GLU SEQRES 3 A 159 MET GLU PRO ARG GLY ILE ASP LEU ALA ALA SER LEU ALA SEQRES 4 A 159 ASP ILE HIS LEU GLU ALA ASP ILE HIS ALA LEU LYS ASN SEQRES 5 A 159 ASN PRO ASN GLY PHE PRO GLU GLY PHE TRP MET PRO TYR SEQRES 6 A 159 LEU THR ILE ALA TYR GLU LEU LYS ASN THR ASP THR GLY SEQRES 7 A 159 ALA ILE LYS ARG GLY THR LEU MET PRO MET VAL ALA ASP SEQRES 8 A 159 ASP GLY PRO HIS TYR GLY ALA ASN ILE ALA MET GLU LYS SEQRES 9 A 159 ASP LYS LYS GLY GLY PHE GLY VAL GLY ASN TYR GLU LEU SEQRES 10 A 159 THR PHE TYR ILE SER ASN PRO GLU LYS GLN GLY PHE GLY SEQRES 11 A 159 ARG HIS VAL ASP GLU GLU THR GLY VAL GLY LYS TRP PHE SEQRES 12 A 159 GLU PRO PHE LYS VAL ASP TYR LYS PHE LYS TYR THR GLY SEQRES 13 A 159 THR PRO LYS SEQRES 1 B 159 GLY GLY GLU VAL PRO ILE GLY ASP PRO LYS GLU LEU ASN SEQRES 2 B 159 GLY MET GLU ILE ALA ALA VAL TYR LEU GLN PRO ILE GLU SEQRES 3 B 159 MET GLU PRO ARG GLY ILE ASP LEU ALA ALA SER LEU ALA SEQRES 4 B 159 ASP ILE HIS LEU GLU ALA ASP ILE HIS ALA LEU LYS ASN SEQRES 5 B 159 ASN PRO ASN GLY PHE PRO GLU GLY PHE TRP MET PRO TYR SEQRES 6 B 159 LEU THR ILE ALA TYR GLU LEU LYS ASN THR ASP THR GLY SEQRES 7 B 159 ALA ILE LYS ARG GLY THR LEU MET PRO MET VAL ALA ASP SEQRES 8 B 159 ASP GLY PRO HIS TYR GLY ALA ASN ILE ALA MET GLU LYS SEQRES 9 B 159 ASP LYS LYS GLY GLY PHE GLY VAL GLY ASN TYR GLU LEU SEQRES 10 B 159 THR PHE TYR ILE SER ASN PRO GLU LYS GLN GLY PHE GLY SEQRES 11 B 159 ARG HIS VAL ASP GLU GLU THR GLY VAL GLY LYS TRP PHE SEQRES 12 B 159 GLU PRO PHE LYS VAL ASP TYR LYS PHE LYS TYR THR GLY SEQRES 13 B 159 THR PRO LYS HET CU A 200 1 HET MN A 201 1 HET SO4 A 300 5 HET CU B 200 1 HET MN B 201 1 HET SO4 B 300 5 HETNAM CU COPPER (II) ION HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 CU 2(CU 2+) FORMUL 4 MN 2(MN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *56(H2 O) HELIX 1 1 ASN A 123 GLY A 128 5 6 HELIX 2 2 ALA B 35 ALA B 39 5 5 HELIX 3 3 ASN B 123 GLY B 128 5 6 SHEET 1 A 7 VAL A 4 PRO A 5 0 SHEET 2 A 7 MET A 15 LEU A 22 -1 O TYR A 21 N VAL A 4 SHEET 3 A 7 ILE A 41 ALA A 49 -1 O HIS A 48 N GLU A 16 SHEET 4 A 7 GLY A 93 ILE A 100 -1 O TYR A 96 N ALA A 45 SHEET 5 A 7 ILE A 80 ALA A 90 -1 N MET A 88 O HIS A 95 SHEET 6 A 7 GLY B 130 HIS B 132 1 O HIS B 132 N VAL A 89 SHEET 7 A 7 MET A 27 GLU A 28 -1 N GLU A 28 O ARG B 131 SHEET 1 B 8 LYS A 10 LEU A 12 0 SHEET 2 B 8 MET A 15 LEU A 22 -1 O ILE A 17 N LYS A 10 SHEET 3 B 8 ILE A 41 ALA A 49 -1 O HIS A 48 N GLU A 16 SHEET 4 B 8 GLY A 93 ILE A 100 -1 O TYR A 96 N ALA A 45 SHEET 5 B 8 ILE A 80 ALA A 90 -1 N MET A 88 O HIS A 95 SHEET 6 B 8 THR A 67 ASN A 74 -1 N ILE A 68 O LEU A 85 SHEET 7 B 8 GLY A 113 SER A 122 -1 O GLU A 116 N LYS A 73 SHEET 8 B 8 PHE A 146 TYR A 154 -1 O PHE A 152 N TYR A 115 SHEET 1 C 3 GLU B 3 PRO B 5 0 SHEET 2 C 3 MET B 15 LEU B 22 -1 O TYR B 21 N VAL B 4 SHEET 3 C 3 LYS B 10 LEU B 12 -1 N LYS B 10 O ILE B 17 SHEET 1 D 7 GLU B 3 PRO B 5 0 SHEET 2 D 7 MET B 15 LEU B 22 -1 O TYR B 21 N VAL B 4 SHEET 3 D 7 ILE B 41 ALA B 49 -1 O HIS B 48 N GLU B 16 SHEET 4 D 7 GLY B 93 ILE B 100 -1 O TYR B 96 N ALA B 45 SHEET 5 D 7 MET B 86 ALA B 90 -1 N MET B 88 O HIS B 95 SHEET 6 D 7 GLY A 130 HIS A 132 1 N HIS A 132 O VAL B 89 SHEET 7 D 7 MET B 27 GLU B 28 -1 O GLU B 28 N ARG A 131 SHEET 1 E 4 ILE B 80 THR B 84 0 SHEET 2 E 4 THR B 67 ASN B 74 -1 N TYR B 70 O GLY B 83 SHEET 3 E 4 GLY B 113 SER B 122 -1 O GLU B 116 N LYS B 73 SHEET 4 E 4 PHE B 146 TYR B 154 -1 O PHE B 152 N TYR B 115 LINK OE2 GLU A 3 MN MN A 201 1555 1555 2.67 LINK NE2 HIS A 42 CU CU A 200 1555 1555 2.16 LINK OE1 GLU A 44 MN MN A 201 1555 1555 2.66 LINK SD MET A 88 CU CU A 200 1555 1555 2.39 LINK OD2 ASP A 92 MN MN A 201 1555 1555 2.42 LINK NE2 HIS A 95 CU CU A 200 1555 1555 2.13 LINK NE2 HIS A 132 CU CU B 200 1555 1555 2.19 LINK CU CU A 200 NE2 HIS B 132 1555 1555 2.28 LINK NE2 HIS B 42 CU CU B 200 1555 1555 2.23 LINK SD MET B 88 CU CU B 200 1555 1555 2.49 LINK NE2 HIS B 95 CU CU B 200 1555 1555 2.10 CISPEP 1 GLU A 28 PRO A 29 0 6.46 CISPEP 2 GLU B 28 PRO B 29 0 4.50 SITE 1 AC1 4 HIS A 42 MET A 88 HIS A 95 HIS B 132 SITE 1 AC2 4 GLU A 3 GLU A 44 ASP A 92 LYS A 106 SITE 1 AC3 5 ASP A 8 LYS A 10 ASP A 149 TYR A 150 SITE 2 AC3 5 LYS A 151 SITE 1 AC4 4 HIS A 132 HIS B 42 MET B 88 HIS B 95 SITE 1 AC5 4 GLU B 3 GLU B 44 ASP B 46 ASP B 92 SITE 1 AC6 6 GLY B 7 ASP B 8 LYS B 10 ASP B 149 SITE 2 AC6 6 TYR B 150 LYS B 151 CRYST1 54.499 73.797 75.217 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013295 0.00000