PDB Short entry for 3M0A HEADER SIGNALING PROTEIN 02-MAR-10 3M0A TITLE CRYSTAL STRUCTURE OF TRAF2:CIAP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 266-329; COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR TYPE 2 RECEPTOR-ASSOCIATED PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 3; COMPND 9 CHAIN: D; COMPND 10 FRAGMENT: RESIDUES 26-99; COMPND 11 SYNONYM: INHIBITOR OF APOPTOSIS PROTEIN 1, IAP-1, HIAP-1, HIAP1, C- COMPND 12 IAP2, TNFR2-TRAF-SIGNALING COMPLEX PROTEIN 1, IAP HOMOLOG C, COMPND 13 APOPTOSIS INHIBITOR 2, API2, RING FINGER PROTEIN 49; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: BIRC3, API2, IAP1, MIHC, RNF49; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TRAF2: CIAP2 AND THE TRAF1: TRAF2: CIAP2 COMPLEXES, APOPTOSIS, METAL- KEYWDS 2 BINDING, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.KABALEESWARAN,H.WU REVDAT 3 21-FEB-24 3M0A 1 REMARK SEQADV LINK REVDAT 2 29-JUL-15 3M0A 1 COMPND VERSN REVDAT 1 28-APR-10 3M0A 0 JRNL AUTH C.ZHENG,V.KABALEESWARAN,Y.WANG,G.CHENG,H.WU JRNL TITL CRYSTAL STRUCTURES OF THE TRAF2: CIAP2 AND THE TRAF1: TRAF2: JRNL TITL 2 CIAP2 COMPLEXES: AFFINITY, SPECIFICITY, AND REGULATION. JRNL REF MOL.CELL V. 38 101 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20385093 JRNL DOI 10.1016/J.MOLCEL.2010.03.009 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 9689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.4190 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.5250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.67000 REMARK 3 B22 (A**2) : -2.67000 REMARK 3 B33 (A**2) : 5.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.660 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1910 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2588 ; 1.878 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 7.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;39.528 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;22.514 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.065 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1401 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1298 ; 0.750 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2047 ; 1.454 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 612 ; 2.492 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 541 ; 4.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1772 -0.5856 72.7212 REMARK 3 T TENSOR REMARK 3 T11: 0.7974 T22: 0.4074 REMARK 3 T33: 0.6700 T12: -0.0781 REMARK 3 T13: -0.0654 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 0.2082 L22: 2.0399 REMARK 3 L33: 0.4717 L12: 0.9457 REMARK 3 L13: 0.0795 L23: 0.6788 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.1434 S13: 0.0429 REMARK 3 S21: 0.3893 S22: 0.3323 S23: 0.0086 REMARK 3 S31: -0.0228 S32: -0.2601 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 267 B 328 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3830 -0.9014 68.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.7681 T22: 0.3829 REMARK 3 T33: 0.6400 T12: 0.0025 REMARK 3 T13: -0.0910 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.2936 L22: 0.8732 REMARK 3 L33: 0.6865 L12: 0.2495 REMARK 3 L13: 0.3071 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0179 S13: -0.0211 REMARK 3 S21: 0.6164 S22: 0.0069 S23: -0.0201 REMARK 3 S31: 0.0721 S32: 0.1433 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 267 C 328 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1122 -0.7409 68.1228 REMARK 3 T TENSOR REMARK 3 T11: 0.7183 T22: 0.3896 REMARK 3 T33: 0.5504 T12: -0.0410 REMARK 3 T13: -0.0343 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.2589 L22: 1.9310 REMARK 3 L33: 0.6871 L12: -1.1566 REMARK 3 L13: -0.0839 L23: -0.4605 REMARK 3 S TENSOR REMARK 3 S11: -0.2023 S12: 0.1870 S13: -0.0376 REMARK 3 S21: -0.0740 S22: 0.4239 S23: 0.9205 REMARK 3 S31: 0.1264 S32: -0.0700 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 25 D 99 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1626 8.8609 50.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.5763 T22: 0.4935 REMARK 3 T33: 0.5232 T12: -0.0122 REMARK 3 T13: 0.0325 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 2.1381 L22: 2.3286 REMARK 3 L33: 4.1531 L12: 0.6026 REMARK 3 L13: -1.1326 L23: -0.8355 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.0931 S13: -0.3008 REMARK 3 S21: -0.2036 S22: 0.0046 S23: -0.3090 REMARK 3 S31: 0.6955 S32: -0.1376 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3M0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822,1.2832,1.2664 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYST REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3350, 6% TACSIMATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.06150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 46.06150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.98550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.06150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.49275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.06150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.47825 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.06150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.06150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.98550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 46.06150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.47825 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 46.06150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.49275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 266 REMARK 465 GLY A 329 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 SER B 266 REMARK 465 GLY B 329 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 SER C 266 REMARK 465 GLY C 329 REMARK 465 LEU C 330 REMARK 465 GLU C 331 REMARK 465 LEU D 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 MET A 298 CG SD CE REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 ASP A 312 CG OD1 OD2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLN B 270 CG CD OE1 NE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 ARG B 295 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 311 CG CD OE1 NE2 REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLN B 322 CG CD OE1 NE2 REMARK 470 GLN B 323 CG CD OE1 NE2 REMARK 470 ARG B 326 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 269 CG CD1 CD2 REMARK 470 GLN C 270 CG CD OE1 NE2 REMARK 470 GLU C 273 CG CD OE1 OE2 REMARK 470 LYS C 278 CG CD CE NZ REMARK 470 GLU C 283 CG CD OE1 OE2 REMARK 470 GLU C 301 CG CD OE1 OE2 REMARK 470 GLN C 306 CG CD OE1 NE2 REMARK 470 ARG C 308 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 309 CG CD1 CD2 REMARK 470 GLN C 311 CG CD OE1 NE2 REMARK 470 ILE C 314 CG1 CG2 CD1 REMARK 470 GLU C 315 CG CD OE1 OE2 REMARK 470 GLN C 322 CG CD OE1 NE2 REMARK 470 GLN C 323 CG CD OE1 NE2 REMARK 470 GLU C 325 CG CD OE1 OE2 REMARK 470 ARG C 326 CG CD NE CZ NH1 NH2 REMARK 470 MET D 25 CG SD CE REMARK 470 VAL D 60 CG1 CG2 REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 ARG D 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 84 CG CD OE1 OE2 REMARK 470 LYS D 87 CG CD CE NZ REMARK 470 ARG D 94 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 289 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 CYS B 303 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG D 32 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 310 -25.74 -39.63 REMARK 500 LEU C 317 -70.34 -57.23 REMARK 500 ASN D 61 -126.04 51.13 REMARK 500 TYR D 90 77.09 -171.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 66 SG REMARK 620 2 CYS D 69 SG 99.2 REMARK 620 3 HIS D 86 NE2 101.7 105.0 REMARK 620 4 CYS D 93 SG 118.4 108.0 121.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M06 RELATED DB: PDB REMARK 900 RELATED ID: 3M0D RELATED DB: PDB DBREF 3M0A A 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M0A B 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M0A C 266 329 UNP Q12933 TRAF2_HUMAN 266 329 DBREF 3M0A D 26 99 UNP Q13489 BIRC3_HUMAN 26 99 SEQADV 3M0A LEU A 330 UNP Q12933 EXPRESSION TAG SEQADV 3M0A GLU A 331 UNP Q12933 EXPRESSION TAG SEQADV 3M0A LEU B 330 UNP Q12933 EXPRESSION TAG SEQADV 3M0A GLU B 331 UNP Q12933 EXPRESSION TAG SEQADV 3M0A LEU C 330 UNP Q12933 EXPRESSION TAG SEQADV 3M0A GLU C 331 UNP Q12933 EXPRESSION TAG SEQADV 3M0A MET D 25 UNP Q13489 INITIATING METHIONINE SEQRES 1 A 66 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 A 66 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 A 66 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 A 66 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 A 66 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 A 66 GLU SEQRES 1 B 66 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 B 66 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 B 66 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 B 66 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 B 66 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 B 66 GLU SEQRES 1 C 66 SER GLU LEU LEU GLN ARG CYS GLU SER LEU GLU LYS LYS SEQRES 2 C 66 THR ALA THR PHE GLU ASN ILE VAL CYS VAL LEU ASN ARG SEQRES 3 C 66 GLU VAL GLU ARG VAL ALA MET THR ALA GLU ALA CYS SER SEQRES 4 C 66 ARG GLN HIS ARG LEU ASP GLN ASP LYS ILE GLU ALA LEU SEQRES 5 C 66 SER SER LYS VAL GLN GLN LEU GLU ARG SER ILE GLY LEU SEQRES 6 C 66 GLU SEQRES 1 D 75 MET LEU SER CYS GLU LEU TYR ARG MET SER THR TYR SER SEQRES 2 D 75 THR PHE PRO ALA GLY VAL PRO VAL SER GLU ARG SER LEU SEQRES 3 D 75 ALA ARG ALA GLY PHE TYR TYR THR GLY VAL ASN ASP LYS SEQRES 4 D 75 VAL LYS CYS PHE CYS CYS GLY LEU MET LEU ASP ASN TRP SEQRES 5 D 75 LYS ARG GLY ASP SER PRO THR GLU LYS HIS LYS LYS LEU SEQRES 6 D 75 TYR PRO SER CYS ARG PHE VAL GLN SER LEU HET ZN D 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *36(H2 O) HELIX 1 1 GLU A 267 ILE A 328 1 62 HELIX 2 2 GLU B 267 CYS B 303 1 37 HELIX 3 3 LEU B 309 ILE B 328 1 20 HELIX 4 4 GLU C 267 ILE C 328 1 62 HELIX 5 5 SER D 27 THR D 35 1 9 HELIX 6 6 TYR D 36 PHE D 39 5 4 HELIX 7 7 SER D 46 ALA D 53 1 8 HELIX 8 8 SER D 81 TYR D 90 1 10 SHEET 1 A 3 PHE D 55 TYR D 57 0 SHEET 2 A 3 VAL D 64 CYS D 66 -1 O LYS D 65 N TYR D 56 SHEET 3 A 3 MET D 72 LEU D 73 -1 O LEU D 73 N VAL D 64 LINK SG CYS D 66 ZN ZN D 401 1555 1555 2.22 LINK SG CYS D 69 ZN ZN D 401 1555 1555 2.37 LINK NE2 HIS D 86 ZN ZN D 401 1555 1555 2.23 LINK SG CYS D 93 ZN ZN D 401 1555 1555 2.39 SITE 1 AC1 4 CYS D 66 CYS D 69 HIS D 86 CYS D 93 CRYST1 92.123 92.123 85.971 90.00 90.00 90.00 I 41 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011632 0.00000