PDB Short entry for 3M10 HEADER TRANSFERASE 03-MAR-10 3M10 TITLE SUBSTRATE-FREE FORM OF ARGININE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ALPHA-BETA, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, GUANIDINO KEYWDS 2 KINASE, PHOSPHAGEN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.YOUSEF,S.A.CLARK,P.K.PRUETT,T.SOMASUNDARAM,W.R.ELLINGTON, AUTHOR 2 M.S.CHAPMAN REVDAT 7 06-SEP-23 3M10 1 REMARK REVDAT 6 13-OCT-21 3M10 1 REMARK SEQADV REVDAT 5 17-JUL-19 3M10 1 REMARK REVDAT 4 23-FEB-11 3M10 1 JRNL REVDAT 3 10-NOV-10 3M10 1 JRNL REVDAT 2 26-MAY-10 3M10 1 JRNL REVDAT 1 16-MAR-10 3M10 0 SPRSDE 16-MAR-10 3M10 1M80 JRNL AUTH X.NIU,L.BRUSCHWEILER-LI,O.DAVULCU,J.J.SKALICKY, JRNL AUTH 2 R.BRUSCHWEILER,M.S.CHAPMAN JRNL TITL ARGININE KINASE: JOINT CRYSTALLOGRAPHIC AND NMR RDC ANALYSES JRNL TITL 2 LINK SUBSTRATE-ASSOCIATED MOTIONS TO INTRINSIC FLEXIBILITY. JRNL REF J.MOL.BIOL. V. 405 479 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21075117 JRNL DOI 10.1016/J.JMB.2010.11.007 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.CHAPMAN,T.SOMASUNDARAM REMARK 1 TITL DE-ICING: RECOVERY OF DIFFRACTION INTENSITIES IN THE REMARK 1 TITL 2 PRESENCE OF ICE RINGS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 741 2010 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 20516627 REMARK 1 DOI 10.1107/S0907444910012436 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.S.YOUSEF,S.A.CLARK,P.K.PRUETT,T.SOMASUNDARAM, REMARK 1 AUTH 2 W.R.ELLINGTON,M.S.CHAPMAN REMARK 1 TITL INDUCED FIT IN GUANIDINO KINASES--COMPARISON OF REMARK 1 TITL 2 SUBSTRATE-FREE AND TRANSITION STATE ANALOG STRUCTURES OF REMARK 1 TITL 3 ARGININE KINASE. REMARK 1 REF PROTEIN SCI. V. 12 103 2003 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 12493833 REMARK 1 DOI 10.1110/PS.0226303 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 64403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6213 - 4.0573 0.86 4833 151 0.1579 0.1929 REMARK 3 2 4.0573 - 3.2222 0.91 5013 154 0.1566 0.2222 REMARK 3 3 3.2222 - 2.8154 0.93 5175 150 0.1785 0.2288 REMARK 3 4 2.8154 - 2.5582 0.94 5172 155 0.1725 0.2378 REMARK 3 5 2.5582 - 2.3749 0.93 5171 151 0.1686 0.1999 REMARK 3 6 2.3749 - 2.2350 0.87 4775 135 0.2116 0.3101 REMARK 3 7 2.2350 - 2.1231 0.91 5010 137 0.1866 0.2399 REMARK 3 8 2.1231 - 2.0307 0.92 5104 159 0.1907 0.2376 REMARK 3 9 2.0307 - 1.9526 0.89 4879 137 0.2090 0.2570 REMARK 3 10 1.9526 - 1.8852 0.80 4379 140 0.3172 0.3648 REMARK 3 11 1.8852 - 1.8263 0.80 4425 122 0.2432 0.2857 REMARK 3 12 1.8263 - 1.7741 0.82 4448 135 0.2493 0.3149 REMARK 3 13 1.7741 - 1.7274 0.76 4153 140 0.2566 0.2911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 60.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.44680 REMARK 3 B22 (A**2) : -9.32620 REMARK 3 B33 (A**2) : 11.77290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.77770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5676 REMARK 3 ANGLE : 0.803 7664 REMARK 3 CHIRALITY : 0.052 838 REMARK 3 PLANARITY : 0.004 996 REMARK 3 DIHEDRAL : 15.198 2127 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 2:99 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2569 33.9566 51.3106 REMARK 3 T TENSOR REMARK 3 T11: 0.1232 T22: 0.1474 REMARK 3 T33: 0.1519 T12: 0.0111 REMARK 3 T13: -0.0091 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.5162 L22: 0.8004 REMARK 3 L33: 0.3086 L12: -0.0426 REMARK 3 L13: -0.1518 L23: -0.1734 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.0188 S13: 0.2418 REMARK 3 S21: -0.0612 S22: -0.0090 S23: -0.1175 REMARK 3 S31: -0.0908 S32: -0.0129 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 100:280 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2109 8.0935 46.2017 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.1248 REMARK 3 T33: 0.0896 T12: -0.0120 REMARK 3 T13: -0.0124 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2033 L22: 1.7994 REMARK 3 L33: 0.0961 L12: -0.5011 REMARK 3 L13: -0.0361 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0297 S13: -0.0712 REMARK 3 S21: -0.0424 S22: -0.0646 S23: 0.2279 REMARK 3 S31: 0.0443 S32: -0.0100 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 281:314 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7861 8.7834 57.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.1440 REMARK 3 T33: 0.3005 T12: -0.0557 REMARK 3 T13: -0.1102 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.1982 L22: 0.1522 REMARK 3 L33: 0.8420 L12: 0.0719 REMARK 3 L13: -0.0909 L23: -0.0936 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0575 S13: 0.1563 REMARK 3 S21: 0.3947 S22: 0.0209 S23: -0.3069 REMARK 3 S31: -0.4526 S32: -0.0840 S33: 0.0501 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 315:357 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5616 8.0032 49.1642 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1629 REMARK 3 T33: 0.2271 T12: -0.0045 REMARK 3 T13: -0.0186 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: -0.0105 L22: 0.0726 REMARK 3 L33: 0.0305 L12: -0.0623 REMARK 3 L13: -0.0144 L23: -0.0619 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0618 S13: 0.0610 REMARK 3 S21: -0.0293 S22: -0.1484 S23: -0.2328 REMARK 3 S31: -0.1370 S32: 0.0279 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 2:99 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1302 -6.3795 80.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1511 REMARK 3 T33: 0.2107 T12: -0.0052 REMARK 3 T13: 0.0273 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 0.6515 L22: 0.5923 REMARK 3 L33: 0.1257 L12: 0.2163 REMARK 3 L13: 0.0858 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.0286 S13: -0.4319 REMARK 3 S21: -0.0032 S22: -0.0234 S23: -0.1920 REMARK 3 S31: 0.0111 S32: 0.0128 S33: -0.0028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 100:280 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7777 19.7296 85.0146 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1187 REMARK 3 T33: 0.0945 T12: -0.0080 REMARK 3 T13: 0.0228 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.8263 L22: 0.9868 REMARK 3 L33: -0.0391 L12: 0.7733 REMARK 3 L13: -0.0345 L23: -0.0796 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: -0.0759 S13: 0.1685 REMARK 3 S21: 0.0748 S22: -0.0650 S23: 0.1434 REMARK 3 S31: -0.0335 S32: -0.0083 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 281:314 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5257 18.5913 74.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.1708 REMARK 3 T33: 0.2621 T12: 0.0364 REMARK 3 T13: 0.0860 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.4656 L22: 0.1447 REMARK 3 L33: 0.2392 L12: -0.0083 REMARK 3 L13: -0.2326 L23: -0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.1477 S12: 0.3390 S13: -0.4474 REMARK 3 S21: -0.3029 S22: -0.0603 S23: -0.1114 REMARK 3 S31: 0.2938 S32: -0.1397 S33: 0.0017 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 315:357 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8772 19.7297 82.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1638 REMARK 3 T33: 0.2139 T12: -0.0087 REMARK 3 T13: 0.0071 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.1432 L22: 0.1257 REMARK 3 L33: 0.1829 L12: 0.1119 REMARK 3 L13: 0.2139 L23: -0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: -0.0654 S13: -0.2947 REMARK 3 S21: -0.1638 S22: -0.0881 S23: -0.3316 REMARK 3 S31: 0.1436 S32: 0.1013 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENT GE (111) REMARK 200 OPTICS : BENT CONICAL SI MIRROR (RH REMARK 200 -COATED) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DEICE.PY & DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.727 REMARK 200 RESOLUTION RANGE LOW (A) : 28.513 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1M15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML PROTEIN, 26% PEG5000 MME, REMARK 280 0.1M MES, 0.1M (NH4)2SO4. SMALL CRYSTALS WERE USED FOR REMARK 280 MACROSEEDING IDENTICAL CONDITIONS, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.21400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 311 REMARK 465 ARG A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 HIS A 315 REMARK 465 THR A 316 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 GLU A 319 REMARK 465 MET B 1 REMARK 465 THR B 311 REMARK 465 ARG B 312 REMARK 465 GLY B 313 REMARK 465 GLU B 314 REMARK 465 HIS B 315 REMARK 465 THR B 316 REMARK 465 GLU B 317 REMARK 465 SER B 318 REMARK 465 GLU B 319 REMARK 465 GLY B 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -68.27 -101.74 REMARK 500 PHE A 119 -50.67 -129.49 REMARK 500 ASP A 161 -127.36 59.60 REMARK 500 GLU A 224 -70.03 -79.66 REMARK 500 ASN A 274 -98.70 -90.09 REMARK 500 LEU A 275 178.16 54.47 REMARK 500 THR A 278 14.30 52.44 REMARK 500 VAL B 65 -68.17 -97.56 REMARK 500 PHE B 119 -50.85 -120.73 REMARK 500 ASP B 161 -125.51 58.14 REMARK 500 GLU B 224 -96.48 -81.15 REMARK 500 ASN B 274 -98.79 -95.51 REMARK 500 LEU B 275 -176.99 55.41 REMARK 500 THR B 278 14.76 56.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M80 RELATED DB: PDB REMARK 900 REPLACEMENT DEPOSITION (REFINEMENT AT HIGHER RESOLUTION) REMARK 900 RELATED ID: 1M15 RELATED DB: PDB REMARK 900 TRANSITION STATE STRUCTURE DBREF 3M10 A 1 357 UNP P51541 KARG_LIMPO 1 357 DBREF 3M10 B 1 357 UNP P51541 KARG_LIMPO 1 357 SEQADV 3M10 GLN A 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 3M10 GLY A 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 3M10 ALA A 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQADV 3M10 GLN B 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 3M10 GLY B 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 3M10 ALA B 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQRES 1 A 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 A 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 A 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 A 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 A 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 A 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 A 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 A 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 A 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 A 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 A 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 A 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 A 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 A 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 A 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 A 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 A 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 A 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 A 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 A 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 A 357 MET GLU LYS ALA ALA ALA SEQRES 1 B 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 B 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 B 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 B 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 B 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 B 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 B 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 B 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 B 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 B 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 B 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 B 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 B 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 B 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 B 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 B 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 B 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 B 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 B 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 B 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 B 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 B 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 B 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 B 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 B 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 B 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 B 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 B 357 MET GLU LYS ALA ALA ALA HET SO4 A 400 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *960(H2 O) HELIX 1 1 ASP A 3 ALA A 20 1 18 HELIX 2 2 SER A 25 LEU A 31 1 7 HELIX 3 3 THR A 32 LYS A 40 1 9 HELIX 4 4 LEU A 50 ASN A 60 1 11 HELIX 5 5 GLU A 73 PHE A 78 1 6 HELIX 6 6 PHE A 78 HIS A 90 1 13 HELIX 7 7 ASP A 106 LEU A 110 5 5 HELIX 8 8 PHE A 136 LEU A 140 5 5 HELIX 9 9 THR A 141 SER A 158 1 18 HELIX 10 10 GLU A 160 LEU A 163 5 4 HELIX 11 11 SER A 174 HIS A 185 1 12 HELIX 12 12 ASP A 192 THR A 197 1 6 HELIX 13 13 ASP A 238 LEU A 257 1 20 HELIX 14 14 LYS A 289 LYS A 292 5 4 HELIX 15 15 ASP A 293 PHE A 304 1 12 HELIX 16 16 THR A 334 ALA A 356 1 23 HELIX 17 17 ASP B 3 ALA B 20 1 18 HELIX 18 18 SER B 25 LEU B 31 1 7 HELIX 19 19 THR B 32 LYS B 40 1 9 HELIX 20 20 LEU B 50 ASN B 60 1 11 HELIX 21 21 GLU B 73 PHE B 78 1 6 HELIX 22 22 PHE B 78 HIS B 90 1 13 HELIX 23 23 ASP B 106 LEU B 110 5 5 HELIX 24 24 PHE B 136 LEU B 140 5 5 HELIX 25 25 THR B 141 SER B 158 1 18 HELIX 26 26 GLU B 160 LEU B 163 5 4 HELIX 27 27 SER B 174 ASP B 184 1 11 HELIX 28 28 ASP B 192 THR B 197 1 6 HELIX 29 29 ASP B 238 LEU B 257 1 20 HELIX 30 30 LYS B 289 LYS B 292 5 4 HELIX 31 31 ASP B 293 PHE B 304 1 12 HELIX 32 32 THR B 334 ALA B 356 1 23 SHEET 1 A 8 GLY A 165 PRO A 169 0 SHEET 2 A 8 GLY A 209 ASN A 213 -1 O ILE A 210 N TYR A 168 SHEET 3 A 8 PHE A 218 VAL A 222 -1 O VAL A 222 N GLY A 209 SHEET 4 A 8 LEU A 228 LYS A 235 -1 O ILE A 231 N LEU A 219 SHEET 5 A 8 ILE A 120 ARG A 129 -1 N VAL A 125 O SER A 232 SHEET 6 A 8 ARG A 280 GLN A 286 -1 O HIS A 284 N ILE A 121 SHEET 7 A 8 VAL A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 A 8 LEU A 306 ARG A 309 -1 N GLN A 307 O SER A 326 SHEET 1 B 2 HIS A 261 ASP A 262 0 SHEET 2 B 2 GLY A 266 PHE A 267 -1 O GLY A 266 N ASP A 262 SHEET 1 C 8 GLY B 165 PRO B 169 0 SHEET 2 C 8 GLY B 209 ASN B 213 -1 O ILE B 210 N TYR B 168 SHEET 3 C 8 PHE B 218 VAL B 222 -1 O VAL B 222 N GLY B 209 SHEET 4 C 8 LEU B 228 LYS B 235 -1 O ILE B 231 N LEU B 219 SHEET 5 C 8 ILE B 120 ARG B 129 -1 N CYS B 127 O ILE B 230 SHEET 6 C 8 ARG B 280 GLN B 286 -1 O HIS B 284 N ILE B 121 SHEET 7 C 8 VAL B 322 ASN B 327 -1 O TYR B 323 N ILE B 285 SHEET 8 C 8 LEU B 306 ARG B 309 -1 N ARG B 309 O ASP B 324 SHEET 1 D 2 HIS B 261 ASP B 262 0 SHEET 2 D 2 GLY B 266 PHE B 267 -1 O GLY B 266 N ASP B 262 CISPEP 1 TRP A 204 PRO A 205 0 1.86 CISPEP 2 TRP B 204 PRO B 205 0 2.25 SITE 1 AC1 5 ARG A 124 ARG A 126 ARG A 229 ARG A 280 SITE 2 AC1 5 HOH A 512 SITE 1 AC2 5 ARG B 124 ARG B 126 ARG B 229 ARG B 280 SITE 2 AC2 5 HOH B 922 CRYST1 60.218 90.428 70.554 90.00 111.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016606 0.000000 0.006381 0.00000 SCALE2 0.000000 0.011059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015184 0.00000