PDB Short entry for 3M5A HEADER TRANSFERASE 12-MAR-10 3M5A TITLE SET7/9 Y245A IN COMPLEX WITH TAF10-K189ME3 PEPTIDE AND ADOHCY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 110-366; COMPND 5 SYNONYM: HISTONE H3-K4 METHYLTRANSFERASE SETD7, H3-K4-HMTASE SETD7, COMPND 6 SET DOMAIN-CONTAINING PROTEIN 7, SET7/9, LYSINE N-METHYLTRANSFERASE COMPND 7 7; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: TAF10-K189ME3 PEPTIDE; COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: 9606; SOURCE 6 GENE: KIAA1717, KMT7, SET7, SET9, SETD7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)ROSETTA2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHIS2; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS TERNARY COMPLEX, SET DOMAIN, METHYLTRANSFERASE, S-ADENOSYL-L- KEYWDS 2 HOMOCYSTEINE, TAF10 PEPTIDE, N-TRIMETHYLLYSINE, CHROMATIN REGULATOR, KEYWDS 3 CHROMOSOMAL PROTEIN, NUCLEUS, S-ADENOSYL-L-METHIONINE, KEYWDS 4 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.DEL RIZZO,J.-F.COUTURE,M.S.ROIKO,B.S.STRUNK,J.S.BRUNZELLE, AUTHOR 2 L.M.DIRK,R.L.HOUTZ,R.C.TRIEVEL REVDAT 6 06-SEP-23 3M5A 1 REMARK REVDAT 5 06-OCT-21 3M5A 1 REMARK SEQADV LINK REVDAT 4 20-NOV-19 3M5A 1 SEQADV LINK REVDAT 3 08-NOV-17 3M5A 1 REMARK REVDAT 2 14-NOV-12 3M5A 1 JRNL VERSN REVDAT 1 28-JUL-10 3M5A 0 JRNL AUTH P.A.DEL RIZZO,J.F.COUTURE,L.M.DIRK,B.S.STRUNK,M.S.ROIKO, JRNL AUTH 2 J.S.BRUNZELLE,R.L.HOUTZ,R.C.TRIEVEL JRNL TITL SET7/9 CATALYTIC MUTANTS REVEAL THE ROLE OF ACTIVE SITE JRNL TITL 2 WATER MOLECULES IN LYSINE MULTIPLE METHYLATION. JRNL REF J.BIOL.CHEM. V. 285 31849 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20675860 JRNL DOI 10.1074/JBC.M110.114587 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2681 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2098 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2864 ; 1.342 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 5.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.864 ;23.626 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 311 ;11.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1609 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 0.900 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2086 ; 1.704 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 804 ; 2.328 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 770 ; 3.801 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3M5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F69 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 6.6, 0.0025 M COCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.71333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.85667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.85667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.71333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 465 MET A 108 REMARK 465 GLY A 109 REMARK 465 TYR A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 PRO A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 SER A 345 REMARK 465 GLN A 365 REMARK 465 LYS A 366 REMARK 465 THR B 194 REMARK 465 LEU B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 SER A 340 OG REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 152 -43.08 -135.38 REMARK 500 ASP A 194 55.23 -155.95 REMARK 500 THR A 197 -167.93 -117.23 REMARK 500 SER A 202 146.29 -170.82 REMARK 500 ASP A 270 -162.37 -163.09 REMARK 500 CYS A 288 20.45 -142.89 REMARK 500 LYS B 187 55.23 -93.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 8 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 283 NE2 64.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 370 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F69 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SET7/9 BOUND TO ADOHCY AND A TAF10 PEPTIDE REMARK 900 RELATED ID: 3M54 RELATED DB: PDB REMARK 900 RELATED ID: 3M55 RELATED DB: PDB REMARK 900 RELATED ID: 3M56 RELATED DB: PDB REMARK 900 RELATED ID: 3M57 RELATED DB: PDB REMARK 900 RELATED ID: 3M58 RELATED DB: PDB REMARK 900 RELATED ID: 3M59 RELATED DB: PDB REMARK 900 RELATED ID: 3M53 RELATED DB: PDB DBREF 3M5A A 110 366 UNP Q8WTS6 SETD7_HUMAN 110 366 DBREF 3M5A B 185 195 PDB 3M5A 3M5A 185 195 SEQADV 3M5A GLY A 106 UNP Q8WTS6 EXPRESSION TAG SEQADV 3M5A ALA A 107 UNP Q8WTS6 EXPRESSION TAG SEQADV 3M5A MET A 108 UNP Q8WTS6 EXPRESSION TAG SEQADV 3M5A GLY A 109 UNP Q8WTS6 EXPRESSION TAG SEQADV 3M5A ALA A 245 UNP Q8WTS6 TYR 245 ENGINEERED MUTATION SEQRES 1 A 261 GLY ALA MET GLY TYR LYS ASP ASN ILE ARG HIS GLY VAL SEQRES 2 A 261 CYS TRP ILE TYR TYR PRO ASP GLY GLY SER LEU VAL GLY SEQRES 3 A 261 GLU VAL ASN GLU ASP GLY GLU MET THR GLY GLU LYS ILE SEQRES 4 A 261 ALA TYR VAL TYR PRO ASP GLU ARG THR ALA LEU TYR GLY SEQRES 5 A 261 LYS PHE ILE ASP GLY GLU MET ILE GLU GLY LYS LEU ALA SEQRES 6 A 261 THR LEU MET SER THR GLU GLU GLY ARG PRO HIS PHE GLU SEQRES 7 A 261 LEU MET PRO GLY ASN SER VAL TYR HIS PHE ASP LYS SER SEQRES 8 A 261 THR SER SER CYS ILE SER THR ASN ALA LEU LEU PRO ASP SEQRES 9 A 261 PRO TYR GLU SER GLU ARG VAL TYR VAL ALA GLU SER LEU SEQRES 10 A 261 ILE SER SER ALA GLY GLU GLY LEU PHE SER LYS VAL ALA SEQRES 11 A 261 VAL GLY PRO ASN THR VAL MET SER PHE ALA ASN GLY VAL SEQRES 12 A 261 ARG ILE THR HIS GLN GLU VAL ASP SER ARG ASP TRP ALA SEQRES 13 A 261 LEU ASN GLY ASN THR LEU SER LEU ASP GLU GLU THR VAL SEQRES 14 A 261 ILE ASP VAL PRO GLU PRO TYR ASN HIS VAL SER LYS TYR SEQRES 15 A 261 CYS ALA SER LEU GLY HIS LYS ALA ASN HIS SER PHE THR SEQRES 16 A 261 PRO ASN CYS ILE TYR ASP MET PHE VAL HIS PRO ARG PHE SEQRES 17 A 261 GLY PRO ILE LYS CYS ILE ARG THR LEU ARG ALA VAL GLU SEQRES 18 A 261 ALA ASP GLU GLU LEU THR VAL ALA TYR GLY TYR ASP HIS SEQRES 19 A 261 SER PRO PRO GLY LYS SER GLY PRO GLU ALA PRO GLU TRP SEQRES 20 A 261 TYR GLN VAL GLU LEU LYS ALA PHE GLN ALA THR GLN GLN SEQRES 21 A 261 LYS SEQRES 1 B 11 ACE SER LYS SER M3L ASP ARG LYS TYR THR LEU MODRES 3M5A M3L B 189 LYS N-TRIMETHYLLYSINE HET ACE B 185 3 HET M3L B 189 12 HET SAH A 1 26 HET CO A 367 1 HET CO A 2 1 HET CO A 3 1 HET CO A 4 1 HET CO A 5 1 HET CO A 7 1 HET CO A 8 1 HET GOL A 368 6 HET GOL A 369 6 HET GOL A 370 6 HETNAM ACE ACETYL GROUP HETNAM M3L N-TRIMETHYLLYSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACE C2 H4 O FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 CO 7(CO 2+) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 14 HOH *150(H2 O) HELIX 1 1 ASP A 209 GLU A 214 1 6 HELIX 2 2 THR A 251 SER A 257 1 7 HELIX 3 3 ASP A 259 ASN A 263 5 5 HELIX 4 4 LEU A 291 ALA A 295 5 5 HELIX 5 5 PRO A 350 GLN A 364 1 15 SHEET 1 A 6 CYS A 119 TYR A 122 0 SHEET 2 A 6 SER A 128 GLY A 131 -1 O LEU A 129 N ILE A 121 SHEET 3 A 6 GLY A 141 VAL A 147 -1 O ALA A 145 N VAL A 130 SHEET 4 A 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 A 6 GLU A 163 GLU A 176 -1 O LYS A 168 N TYR A 156 SHEET 6 A 6 ARG A 179 LEU A 184 -1 O HIS A 181 N MET A 173 SHEET 1 B 6 CYS A 119 TYR A 122 0 SHEET 2 B 6 SER A 128 GLY A 131 -1 O LEU A 129 N ILE A 121 SHEET 3 B 6 GLY A 141 VAL A 147 -1 O ALA A 145 N VAL A 130 SHEET 4 B 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 B 6 GLU A 163 GLU A 176 -1 O LYS A 168 N TYR A 156 SHEET 6 B 6 VAL A 190 TYR A 191 -1 O TYR A 191 N GLY A 167 SHEET 1 C 4 VAL A 216 GLU A 220 0 SHEET 2 C 4 GLU A 228 SER A 232 -1 O GLY A 229 N ALA A 219 SHEET 3 C 4 GLU A 330 VAL A 333 -1 O LEU A 331 N LEU A 230 SHEET 4 C 4 ASN A 296 HIS A 297 1 N ASN A 296 O VAL A 333 SHEET 1 D 3 VAL A 241 ALA A 245 0 SHEET 2 D 3 GLY A 314 THR A 321 -1 O ILE A 319 N MET A 242 SHEET 3 D 3 CYS A 303 HIS A 310 -1 N ILE A 304 O ARG A 320 SHEET 1 E 3 VAL A 248 ILE A 250 0 SHEET 2 E 3 VAL A 274 ASP A 276 -1 O VAL A 274 N ILE A 250 SHEET 3 E 3 LEU A 267 SER A 268 -1 N LEU A 267 O ILE A 275 LINK C ACE B 185 N SER B 186 1555 1555 1.34 LINK C SER B 188 N M3L B 189 1555 1555 1.32 LINK C M3L B 189 N ASP B 190 1555 1555 1.33 LINK CO CO A 8 NE2 HIS A 116 4455 1555 2.51 LINK CO CO A 8 NE2 HIS A 283 1555 1555 2.08 CISPEP 1 GLU A 279 PRO A 280 0 11.95 SITE 1 AC1 16 HOH A 14 HOH A 61 HOH A 96 ALA A 226 SITE 2 AC1 16 GLU A 228 GLY A 264 ASN A 265 HIS A 293 SITE 3 AC1 16 LYS A 294 ASN A 296 HIS A 297 TYR A 335 SITE 4 AC1 16 TRP A 352 GLU A 356 HOH A 412 HOH A 423 SITE 1 AC2 2 GLU A 351 TRP A 352 SITE 1 AC3 1 ALA A 324 SITE 1 AC4 1 THR A 175 SITE 1 AC5 2 HIS A 116 HIS A 283 SITE 1 AC6 7 HOH A 22 HOH A 76 GLY A 131 TYR A 156 SITE 2 AC6 7 ARG A 179 PRO A 180 GOL A 369 SITE 1 AC7 5 HOH A 30 TYR A 156 HIS A 181 PHE A 182 SITE 2 AC7 5 GOL A 368 SITE 1 AC8 6 HOH A 9 GLY A 141 GLU A 142 LYS A 143 SITE 2 AC8 6 ILE A 144 HOH A 390 CRYST1 83.108 83.108 95.570 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012033 0.006947 0.000000 0.00000 SCALE2 0.000000 0.013894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010464 0.00000