PDB Short entry for 3M9M
HEADER    TRANSFERASE/DNA                         22-MAR-10   3M9M              
TITLE     CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH DNA CONTAINING THE MAJOR    
TITLE    2 CISPLATIN LESION                                                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE IV;                                         
COMPND   3 CHAIN: B;                                                            
COMPND   4 SYNONYM: POL IV;                                                     
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3');     
COMPND   9 CHAIN: P;                                                            
COMPND  10 ENGINEERED: YES;                                                     
COMPND  11 MOL_ID: 3;                                                           
COMPND  12 MOLECULE: DNA (5'-                                                   
COMPND  13 D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3');        
COMPND  14 CHAIN: T;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS;                        
SOURCE   3 ORGANISM_TAXID: 2287;                                                
SOURCE   4 STRAIN: P2;                                                          
SOURCE   5 GENE: DBH, DPO4, SSO2448;                                            
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET22B;                                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: SYNTHETIC DNA OLIGO;                                  
SOURCE  14 MOL_ID: 3;                                                           
SOURCE  15 SYNTHETIC: YES                                                       
KEYWDS    DPO4, TRANSLESION DNA SYNTHESIS, TLS, CISPLATIN, Y-FAMILY DNA         
KEYWDS   2 POLYMERASE, PROTEIN-DNA COMPLEX, DNA, DNA DAMAGE, DNA REPAIR, DNA    
KEYWDS   3 REPLICATION, DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM,    
KEYWDS   4 METAL-BINDING, MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, 
KEYWDS   5 TRANSFERASE-DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.H.Y.WONG,H.LING                                                     
REVDAT   3   08-NOV-17 3M9M    1       REMARK                                   
REVDAT   2   07-JUL-10 3M9M    1       JRNL                                     
REVDAT   1   16-JUN-10 3M9M    0                                                
JRNL        AUTH   J.H.WONG,J.A.BROWN,Z.SUO,P.BLUM,T.NOHMI,H.LING               
JRNL        TITL   STRUCTURAL INSIGHT INTO DYNAMIC BYPASS OF THE MAJOR          
JRNL        TITL 2 CISPLATIN-DNA ADDUCT BY Y-FAMILY POLYMERASE DPO4.            
JRNL        REF    EMBO J.                       V.  29  2059 2010              
JRNL        REFN                   ISSN 0261-4189                               
JRNL        PMID   20512114                                                     
JRNL        DOI    10.1038/EMBOJ.2010.101                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 45.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 98.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 11987                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.285                           
REMARK   3   FREE R VALUE                     : 0.309                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 6.700                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 818                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2743                                    
REMARK   3   NUCLEIC ACID ATOMS       : 554                                     
REMARK   3   HETEROGEN ATOMS          : 53                                      
REMARK   3   SOLVENT ATOMS            : 51                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 63.21                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -11.09200                                            
REMARK   3    B22 (A**2) : 3.73900                                              
REMARK   3    B33 (A**2) : 7.35300                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.510                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 3.452 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 5.641 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 3.918 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 6.451 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : 32.47                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_JW_020210_GG1.PARAM                    
REMARK   3  PARAMETER FILE  3  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  4  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  5  : CTP_PAR_121707.TXT                             
REMARK   3  PARAMETER FILE  6  : GOL_XPLOR_PAR.TXT                              
REMARK   3  PARAMETER FILE  7  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3  TOPOLOGY FILE  2   : NULL                                           
REMARK   3  TOPOLOGY FILE  3   : NULL                                           
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3  TOPOLOGY FILE  7   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3M9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000058281.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 12-MAR-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 24-ID-C                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0781                             
REMARK 200  MONOCHROMATOR                  : CRYO-COOLED SI(111) DOUBLE         
REMARK 200                                   CRYSTAL                            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC Q315                          
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 12009                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.6                               
REMARK 200  DATA REDUNDANCY                : 3.500                              
REMARK 200  R MERGE                    (I) : 0.06100                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.7000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.00                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.40                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.67000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1JX4                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 53.18                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 5% GLYCEROL, 15%   
REMARK 280  PEG 3350, 200MM NACL, PH 7.5, HANGING DROP, TEMPERATURE 298K        
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       49.28800            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       50.59650            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       49.28800            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       50.59650            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 20120 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P, T                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU B   342                                                      
REMARK 465     ALA B   343                                                      
REMARK 465     ILE B   344                                                      
REMARK 465     GLY B   345                                                      
REMARK 465     LEU B   346                                                      
REMARK 465     ASP B   347                                                      
REMARK 465     LYS B   348                                                      
REMARK 465     PHE B   349                                                      
REMARK 465     PHE B   350                                                      
REMARK 465     ASP B   351                                                      
REMARK 465     THR B   352                                                      
REMARK 465      DT T     0                                                      
REMARK 465      DC T     1                                                      
REMARK 465      DT T     2                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DG P  13    O5'  C5'  C4'  O4'  C3'  O3'  C2'                   
REMARK 470      DG P  13    C1'  N9   C8   N7   C5   C6   O6                    
REMARK 470      DG P  13    N1   C2   N2   N3   C4                              
REMARK 470      DC T   5    P                                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG T   3   C2     DG T   3   N3      0.052                       
REMARK 500     DG T   3   N3     DG T   3   C4      0.081                       
REMARK 500     DG T   3   N7     DG T   3   C8     -0.095                       
REMARK 500     DG T   3   N9     DG T   3   C4      0.117                       
REMARK 500     DG T   4   C1'    DG T   4   N9      0.121                       
REMARK 500     DG T   4   C5     DG T   4   C6     -0.100                       
REMARK 500     DG T   4   N7     DG T   4   C8      0.080                       
REMARK 500     DG T   4   C8     DG T   4   N9      0.106                       
REMARK 500     DG T   4   N9     DG T   4   C4     -0.116                       
REMARK 500     DC T   5   C5'    DC T   5   C4'     0.085                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG P  13   O3' -  P   -  OP2 ANGL. DEV. =   7.0 DEGREES          
REMARK 500     DG T   3   O4' -  C1' -  N9  ANGL. DEV. = -12.7 DEGREES          
REMARK 500     DG T   3   C2  -  N3  -  C4  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DG T   3   N3  -  C4  -  C5  ANGL. DEV. =  -5.4 DEGREES          
REMARK 500     DG T   3   C5  -  C6  -  N1  ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DG T   3   N7  -  C8  -  N9  ANGL. DEV. =   3.0 DEGREES          
REMARK 500     DG T   3   N9  -  C4  -  C5  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500     DG T   3   N3  -  C4  -  N9  ANGL. DEV. =   9.3 DEGREES          
REMARK 500     DG T   3   C8  -  N9  -  C1' ANGL. DEV. =  -7.9 DEGREES          
REMARK 500     DG T   4   O4' -  C1' -  N9  ANGL. DEV. =   3.6 DEGREES          
REMARK 500     DG T   4   C4  -  C5  -  N7  ANGL. DEV. =   3.0 DEGREES          
REMARK 500     DG T   4   N7  -  C8  -  N9  ANGL. DEV. =  -4.0 DEGREES          
REMARK 500     DG T   4   C6  -  C5  -  N7  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500     DG T   4   C8  -  N9  -  C1' ANGL. DEV. =   9.2 DEGREES          
REMARK 500     DG T   4   C4  -  N9  -  C1' ANGL. DEV. = -10.1 DEGREES          
REMARK 500     DT T  11   C3' -  C2' -  C1' ANGL. DEV. =  -6.3 DEGREES          
REMARK 500     DC T  16   O5' -  C5' -  C4' ANGL. DEV. =  -7.5 DEGREES          
REMARK 500     DC T  17   C1' -  O4' -  C4' ANGL. DEV. =  -6.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR B  10       45.98     16.53                                   
REMARK 500    PHE B  11      -78.81    -29.71                                   
REMARK 500    VAL B  15       -2.33    -55.93                                   
REMARK 500    ASN B  20       70.79   -164.77                                   
REMARK 500    PHE B  37      159.22    156.49                                   
REMARK 500    ASN B  47      167.95    -46.33                                   
REMARK 500    LYS B  52      -19.91    -48.71                                   
REMARK 500    SER B  96      141.58    170.68                                   
REMARK 500    ASP B 105       35.59   -151.75                                   
REMARK 500    ILE B 111       46.97   -105.52                                   
REMARK 500    ASP B 113       17.72   -142.15                                   
REMARK 500    SER B 145     -168.19   -173.16                                   
REMARK 500    ASN B 161       57.80     35.82                                   
REMARK 500    ILE B 166       76.83   -115.72                                   
REMARK 500    VAL B 203      -18.64    -49.44                                   
REMARK 500    ASP B 211      -16.12    -48.97                                   
REMARK 500    ARG B 253      140.87   -176.14                                   
REMARK 500    SER B 255      166.41    175.82                                   
REMARK 500    ASP B 277       89.81     40.32                                   
REMARK 500    LYS B 278      -18.17     81.25                                   
REMARK 500    THR B 290      156.38    -48.27                                   
REMARK 500    PHE B 340     -179.41    -61.13                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500     DG T   3         0.12    SIDE CHAIN                              
REMARK 500     DG T   4         0.08    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 610                                                                      
REMARK 610 MISSING HETEROATOM                                                   
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 610 I=INSERTION CODE):                                                   
REMARK 610   M RES C SSEQI                                                      
REMARK 610     CTP B 2001                                                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             CPT T1004  PT1                           
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1  DG T   4   N7                                                     
REMARK 620 2 CPT T1004   N1   84.7                                              
REMARK 620 3 CPT T1004   N2  172.8  89.2                                        
REMARK 620 4  DG T   3   N7   99.5 175.0  86.5                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 354  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP B   7   OD1                                                    
REMARK 620 2 PHE B   8   O    83.4                                              
REMARK 620 3 CTP B2001   O2B 153.1  92.5                                        
REMARK 620 4 ASP B 105   OD2 116.0  82.4  89.5                                  
REMARK 620 5 CTP B2001   O1A 109.6 155.3  66.3 108.6                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 355  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA B 181   O                                                      
REMARK 620 2 ILE B 186   O    75.8                                              
REMARK 620 N                    1                                               
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 353  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU B 106   OE2                                                    
REMARK 620 2 CTP B2001   O5' 161.5                                              
REMARK 620 3 ASP B 105   OD1 108.6  89.1                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP B 2001                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 353                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 354                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 355                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 356                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 357                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL P 14                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL P 15                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT T 1004                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3M9N   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3M9O   RELATED DB: PDB                                   
DBREF  3M9M B    1   352  UNP    Q97W02   DPO42_SULSO      1    352             
DBREF  3M9M P    1    13  PDB    3M9M     3M9M             1     13             
DBREF  3M9M T    0    17  PDB    3M9M     3M9M             0     17             
SEQRES   1 B  352  MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA          
SEQRES   2 B  352  GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS          
SEQRES   3 B  352  PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP          
SEQRES   4 B  352  SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS          
SEQRES   5 B  352  PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS          
SEQRES   6 B  352  LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS          
SEQRES   7 B  352  GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU          
SEQRES   8 B  352  LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE          
SEQRES   9 B  352  ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP          
SEQRES  10 B  352  TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN          
SEQRES  11 B  352  LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY          
SEQRES  12 B  352  ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP          
SEQRES  13 B  352  MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU          
SEQRES  14 B  352  GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP          
SEQRES  15 B  352  VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS          
SEQRES  16 B  352  LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE          
SEQRES  17 B  352  GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS          
SEQRES  18 B  352  ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN          
SEQRES  19 B  352  GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG          
SEQRES  20 B  352  ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU          
SEQRES  21 B  352  ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR          
SEQRES  22 B  352  TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL          
SEQRES  23 B  352  VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY          
SEQRES  24 B  352  ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR          
SEQRES  25 B  352  SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU          
SEQRES  26 B  352  ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER          
SEQRES  27 B  352  LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP          
SEQRES  28 B  352  THR                                                          
SEQRES   1 P   13   DG  DG  DG  DG  DG  DA  DA  DG  DG  DA  DA  DA  DG          
SEQRES   1 T   18   DT  DC  DT  DG  DG  DC  DT  DT  DT  DC  DC  DT  DT          
SEQRES   2 T   18   DC  DC  DC  DC  DC                                          
HET    CTP  B2001      28                                                       
HET     CA  B 353       1                                                       
HET     CA  B 354       1                                                       
HET     CA  B 355       1                                                       
HET     CA  B 356       1                                                       
HET    GOL  B 357       6                                                       
HET    GOL  P  14       6                                                       
HET    GOL  P  15       6                                                       
HET    CPT  T1004       3                                                       
HETNAM     CTP CYTIDINE-5'-TRIPHOSPHATE                                         
HETNAM      CA CALCIUM ION                                                      
HETNAM     GOL GLYCEROL                                                         
HETNAM     CPT CISPLATIN                                                        
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
HETSYN     CPT DIAMMINE(DICHLORO)PLATINUM                                       
FORMUL   4  CTP    C9 H16 N3 O14 P3                                             
FORMUL   5   CA    4(CA 2+)                                                     
FORMUL   9  GOL    3(C3 H8 O3)                                                  
FORMUL  12  CPT    CL2 H6 N2 PT                                                 
FORMUL  13  HOH   *51(H2 O)                                                     
HELIX    1   1 TYR B   10  VAL B   18  1                                   9    
HELIX    2   2 ASN B   20  LYS B   24  5                                   5    
HELIX    3   3 ASN B   47  LYS B   52  1                                   6    
HELIX    4   4 PRO B   60  LEU B   68  1                                   9    
HELIX    5   5 ARG B   77  ARG B   93  1                                  17    
HELIX    6   6 ASP B  117  LYS B  137  1                                  21    
HELIX    7   7 ASN B  147  LYS B  159  1                                  13    
HELIX    8   8 ASP B  167  LEU B  178  1                                  12    
HELIX    9   9 ASP B  179  VAL B  183  5                                   5    
HELIX   10  10 GLY B  187  LYS B  196  1                                  10    
HELIX   11  11 LYS B  201  LEU B  206  5                                   6    
HELIX   12  12 PHE B  210  GLY B  215  1                                   6    
HELIX   13  13 GLY B  218  ARG B  230  1                                  13    
HELIX   14  14 ASN B  257  ASP B  277  1                                  21    
HELIX   15  15 SER B  307  ASP B  326  1                                  20    
SHEET    1   A 5 ILE B  99  SER B 103  0                                        
SHEET    2   A 5 GLU B 106  ASP B 110 -1  O  TYR B 108   N  GLU B 100           
SHEET    3   A 5 VAL B   3  PHE B   8 -1  N  LEU B   4   O  LEU B 109           
SHEET    4   A 5 VAL B 140  SER B 145 -1  O  SER B 145   N  VAL B   3           
SHEET    5   A 5 ILE B 163  VAL B 165  1  O  LYS B 164   N  ILE B 144           
SHEET    1   B 3 GLY B  41  ALA B  46  0                                        
SHEET    2   B 3 VAL B  28  PHE B  33 -1  N  VAL B  32   O  ALA B  42           
SHEET    3   B 3 VAL B  72  PRO B  75  1  O  LEU B  74   N  CYS B  31           
SHEET    1   C 4 ILE B 245  SER B 255  0                                        
SHEET    2   C 4 ILE B 330  PHE B 340 -1  O  ILE B 333   N  VAL B 249           
SHEET    3   C 4 PRO B 281  THR B 290 -1  N  ALA B 283   O  SER B 338           
SHEET    4   C 4 ILE B 295  THR B 301 -1  O  ARG B 298   N  VAL B 286           
LINK         N7   DG T   4                PT1  CPT T1004     1555   1555  1.94  
LINK         N7   DG T   3                PT1  CPT T1004     1555   1555  1.97  
LINK         OD1 ASP B   7                CA    CA B 354     1555   1555  2.33  
LINK         O   PHE B   8                CA    CA B 354     1555   1555  2.49  
LINK         O2B CTP B2001                CA    CA B 354     1555   1555  2.53  
LINK         OD2 ASP B 105                CA    CA B 354     1555   1555  2.57  
LINK         O   ALA B 181                CA    CA B 355     1555   1555  2.74  
LINK         OE2 GLU B 106                CA    CA B 353     1555   1555  2.76  
LINK         O   ILE B 186                CA    CA B 355     1555   1555  2.82  
LINK         O5' CTP B2001                CA    CA B 353     1555   1555  2.99  
LINK         OD1 ASP B 105                CA    CA B 353     1555   1555  3.09  
LINK         O1A CTP B2001                CA    CA B 354     1555   1555  3.14  
CISPEP   1 LYS B  159    PRO B  160          0         0.00                     
SITE     1 AC1 17 PHE B   8  ASP B   9  TYR B  10  PHE B  11                    
SITE     2 AC1 17 TYR B  12  THR B  45  TYR B  48  ARG B  51                    
SITE     3 AC1 17 ALA B  57  ASP B 105  LYS B 159   CA B 353                    
SITE     4 AC1 17  CA B 354  HOH B 377  HOH B 378  HOH B 379                    
SITE     5 AC1 17  DG T   4                                                     
SITE     1 AC2  4 ASP B 105  GLU B 106   CA B 354  CTP B2001                    
SITE     1 AC3  5 ASP B   7  PHE B   8  ASP B 105   CA B 353                    
SITE     2 AC3  5 CTP B2001                                                     
SITE     1 AC4  2 ALA B 181  ILE B 186                                          
SITE     1 AC5  1 ASP B 156                                                     
SITE     1 AC6  2 GLY B 185   DC T  10                                          
SITE     1 AC7  3  DG P   2   DG P   3   DG P   4                               
SITE     1 AC8  3  DA P   6   DA P   7   DC T  13                               
SITE     1 AC9  2  DG T   3   DG T   4                                          
CRYST1   98.576  101.193   52.418  90.00  90.00  90.00 P 21 21 2     4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010144  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009882  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019077        0.00000