PDB Short entry for 3MBF HEADER LYASE 25-MAR-10 3MBF TITLE CRYSTAL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM TITLE 2 ENCEPHALITOZOON CUNICULI, BOUND TO FRUCTOSE 1,6-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_COMMON: MICROSPORIDIAN PARASITE; SOURCE 4 ORGANISM_TAXID: 6035; SOURCE 5 GENE: ECU01_0240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, (SSGCID), KEYWDS 2 ALDOLASE, GLYCOLYSIS, LYASE, SCHIFF BASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3MBF 1 REMARK SEQADV LINK REVDAT 4 21-SEP-11 3MBF 1 JRNL VERSN REVDAT 3 23-JUN-10 3MBF 1 HETNAM REVDAT 2 21-APR-10 3MBF 1 LINK REVDAT 1 07-APR-10 3MBF 0 JRNL AUTH A.GARDBERG,B.SANKARAN,D.DAVIES,J.BHANDARI,B.STAKER,L.STEWART JRNL TITL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM JRNL TITL 2 ENCEPHALITOZOON CUNICULI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1055 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904050 JRNL DOI 10.1107/S1744309111021841 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : TO MATCH 3MBD (RANDOM) REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2708 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1880 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3659 ; 1.499 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4589 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.606 ;23.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;15.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2984 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 0.711 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 698 ; 0.169 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2689 ; 1.360 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 2.350 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 966 ; 3.871 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4500 -26.8760 3.8880 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.1019 REMARK 3 T33: 0.1122 T12: 0.0750 REMARK 3 T13: -0.0779 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 15.3370 L22: 5.6210 REMARK 3 L33: 5.8277 L12: 1.9528 REMARK 3 L13: 4.7240 L23: 5.4101 REMARK 3 S TENSOR REMARK 3 S11: 0.3961 S12: -0.6330 S13: -0.9036 REMARK 3 S21: 0.8615 S22: 0.1291 S23: -0.4782 REMARK 3 S31: 0.9129 S32: 0.1291 S33: -0.5253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0290 -24.3590 4.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0771 REMARK 3 T33: 0.1667 T12: -0.0636 REMARK 3 T13: 0.0306 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 2.4710 L22: 1.7294 REMARK 3 L33: 1.6343 L12: -0.0426 REMARK 3 L13: -0.4530 L23: 0.2812 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.1881 S13: -0.1789 REMARK 3 S21: 0.1865 S22: 0.0120 S23: 0.3038 REMARK 3 S31: 0.0926 S32: -0.1255 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6890 -9.8440 -3.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0882 T22: 0.0488 REMARK 3 T33: 0.0828 T12: -0.0107 REMARK 3 T13: 0.0026 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.6847 L22: 1.3798 REMARK 3 L33: 1.0326 L12: -0.0112 REMARK 3 L13: -0.2043 L23: -0.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.0280 S13: 0.0322 REMARK 3 S21: 0.1263 S22: 0.0022 S23: 0.0711 REMARK 3 S31: -0.1038 S32: -0.0076 S33: -0.0388 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0660 -20.4700 -17.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0489 REMARK 3 T33: 0.0996 T12: -0.0198 REMARK 3 T13: -0.0229 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3683 L22: 1.1107 REMARK 3 L33: 1.1328 L12: 0.0781 REMARK 3 L13: 0.2688 L23: -0.1208 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.1528 S13: -0.0985 REMARK 3 S21: -0.0979 S22: 0.0477 S23: 0.1055 REMARK 3 S31: 0.0562 S32: -0.0393 S33: -0.0652 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7640 -31.8580 -6.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1172 REMARK 3 T33: 0.3338 T12: -0.0925 REMARK 3 T13: -0.0555 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.0793 L22: 0.9911 REMARK 3 L33: 2.1878 L12: -0.4796 REMARK 3 L13: -1.6318 L23: 0.4066 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: 0.0629 S13: -0.2158 REMARK 3 S21: 0.1300 S22: 0.1178 S23: 0.3633 REMARK 3 S31: 0.2745 S32: -0.1903 S33: -0.0041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 28.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3MDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BASED ON PACT SCREEN CONDITION F10 REMARK 280 WITHOUT NAKHPO4: 100MM BIS-TRIS PROPANE PH 6.5, 20% PEG 3350, 20 REMARK 280 MM FRUCTOSE 1,6-BISPHOSPHATE, PROTEIN AT 24.7 MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.77000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.91000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.77000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.91000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -30.77000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 N REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 SER A 310 OG REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 32 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 32 CD LYS A 32 CE -0.484 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 32 CG - CD - CE ANGL. DEV. = 43.0 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 110 -129.52 49.03 REMARK 500 SER A 290 -154.35 -132.09 REMARK 500 ALA A 294 -71.30 -103.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2FP A 345 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MBD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM REMARK 900 ENCEPHALITOZOON CUNICULI, BOUND TO PHOSPHATE REMARK 900 RELATED ID: ENCUA.00440.A RELATED DB: TARGETDB DBREF 3MBF A 1 338 UNP Q8SSM8 ALF_ENCCU 1 338 SEQADV 3MBF GLY A -3 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBF PRO A -2 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBF GLY A -1 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBF SER A 0 UNP Q8SSM8 EXPRESSION TAG SEQRES 1 A 342 GLY PRO GLY SER MET MET ASP CYS ASP HIS LEU LEU ARG SEQRES 2 A 342 LEU GLY MET THR ALA LYS LYS ILE LEU GLU ASN GLY LYS SEQRES 3 A 342 GLY ILE LEU ALA ALA ASP GLU THR PRO LYS THR LEU GLY SEQRES 4 A 342 ARG ARG PHE GLU LYS LEU GLY ILE THR ASN THR GLU GLU SEQRES 5 A 342 ASN ARG ARG LYS PHE ARG GLU ILE LEU PHE SER THR LYS SEQRES 6 A 342 GLY ILE GLU ARG TYR ILE GLY GLY VAL ILE LEU ASN GLN SEQRES 7 A 342 GLU THR PHE GLU GLN THR SER GLY SER GLY VAL PRO LEU SEQRES 8 A 342 THR GLU LEU LEU LYS LYS LYS GLY ILE GLU ILE GLY ILE SEQRES 9 A 342 LYS LEU ASP LYS GLY LEU ILE ASP TYR LYS GLU LYS GLU SEQRES 10 A 342 LYS ILE SER VAL GLY LEU GLU ASP LEU ASP LEU ARG CYS SEQRES 11 A 342 LYS SER SER ALA PHE LYS ASP ALA THR PHE ALA LYS TRP SEQRES 12 A 342 ARG SER LEU PHE TYR PHE TYR ASP GLY ILE PRO SER GLU SEQRES 13 A 342 ASP CYS ILE ASN GLU ASN CYS SER ILE LEU ALA LYS TYR SEQRES 14 A 342 ALA ILE ILE CYS GLN LYS ASN GLY LEU VAL PRO ILE VAL SEQRES 15 A 342 GLU PRO GLU VAL PHE LEU GLU GLY ASP TYR SER MET LYS SEQRES 16 A 342 ARG SER TYR GLU VAL THR ARG GLN ILE LEU SER THR LEU SEQRES 17 A 342 MET LYS TYR LEU ASN TYR GLU LEU VAL TYR ILE PRO GLY SEQRES 18 A 342 VAL LEU ILE LYS ALA SER TYR VAL THR SER GLY GLN LEU SEQRES 19 A 342 SER ASN GLU LYS TYR THR PRO LYS LYS VAL ALA THR PHE SEQRES 20 A 342 THR LEU ARG ALA LEU LEU SER THR ILE PRO CYS GLY ILE SEQRES 21 A 342 PRO GLY ILE VAL PHE LEU SER GLY GLY HIS GLY SER GLU SEQRES 22 A 342 ASP ALA ILE GLY PHE LEU ASN ALA ILE ASN MET GLU ARG SEQRES 23 A 342 GLY CYS ARG THR TRP SER LEU SER PHE SER PHE ALA ARG SEQRES 24 A 342 ALA LEU THR ASP GLY VAL LEU GLU THR TRP ARG GLY ASP SEQRES 25 A 342 ASP SER ASN ILE GLU GLU ALA GLN LYS ILE LEU LEU GLU SEQRES 26 A 342 THR SER PHE LYS ALA CYS ARG GLY ALA GLU GLY LYS LEU SEQRES 27 A 342 TRP ASP GLN GLU HET 2FP A 345 19 HETNAM 2FP 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) FORMUL 2 2FP C6 H14 O12 P2 FORMUL 3 HOH *95(H2 O) HELIX 1 1 ASP A 3 GLU A 19 1 17 HELIX 2 2 ASN A 20 LYS A 22 5 3 HELIX 3 3 THR A 30 LEU A 41 1 12 HELIX 4 4 THR A 46 SER A 59 1 14 HELIX 5 5 GLY A 62 ARG A 65 5 4 HELIX 6 6 GLN A 74 GLN A 79 5 6 HELIX 7 7 PRO A 86 GLY A 95 1 10 HELIX 8 8 GLY A 118 GLU A 120 5 3 HELIX 9 9 ASP A 121 LYS A 127 1 7 HELIX 10 10 SER A 128 LYS A 132 5 5 HELIX 11 11 SER A 151 ASN A 172 1 22 HELIX 12 12 SER A 189 GLU A 211 1 23 HELIX 13 13 TYR A 214 GLY A 217 5 4 HELIX 14 14 THR A 236 ILE A 252 1 17 HELIX 15 15 GLY A 267 GLU A 281 1 15 HELIX 16 16 ALA A 294 ARG A 306 1 13 HELIX 17 17 ASP A 308 SER A 310 5 3 HELIX 18 18 ASN A 311 GLU A 331 1 21 SHEET 1 A 9 GLY A 23 ALA A 27 0 SHEET 2 A 9 ILE A 67 LEU A 72 1 O GLY A 69 N LEU A 25 SHEET 3 A 9 GLU A 97 LYS A 101 1 O GLY A 99 N LEU A 72 SHEET 4 A 9 PHE A 136 PHE A 143 1 O LYS A 138 N ILE A 100 SHEET 5 A 9 VAL A 175 VAL A 182 1 O GLU A 179 N SER A 141 SHEET 6 A 9 LEU A 219 ALA A 222 1 O LYS A 221 N VAL A 178 SHEET 7 A 9 GLY A 258 PHE A 261 1 O VAL A 260 N ILE A 220 SHEET 8 A 9 SER A 288 PHE A 293 1 O SER A 292 N PHE A 261 SHEET 9 A 9 GLY A 23 ALA A 27 1 N ILE A 24 O PHE A 291 SHEET 1 B 2 LEU A 106 TYR A 109 0 SHEET 2 B 2 GLU A 113 SER A 116 -1 O ILE A 115 N ILE A 107 LINK NZ LYS A 221 C2 2FP A 345 1555 1555 1.68 CISPEP 1 ILE A 149 PRO A 150 0 12.63 SITE 1 AC1 22 ALA A 26 ASP A 28 GLU A 29 THR A 30 SITE 2 AC1 22 THR A 33 LYS A 101 LYS A 138 ARG A 140 SITE 3 AC1 22 GLU A 179 LYS A 221 SER A 263 GLY A 264 SITE 4 AC1 22 SER A 292 PHE A 293 ALA A 294 ARG A 295 SITE 5 AC1 22 HOH A 351 HOH A 364 HOH A 376 HOH A 395 SITE 6 AC1 22 HOH A 423 HOH A 430 CRYST1 121.460 135.820 61.540 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016250 0.00000