PDB Short entry for 3MDI
HEADER    RNA BINDING/RNA                         30-MAR-10   3MDI              
TITLE     CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN 
TITLE    2 COMPLEX WITH RNA UGUAAA                                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5; 
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 25 KDA      
COMPND   5 SUBUNIT, CPSF 25 KDA SUBUNIT, PRE-MRNA CLEAVAGE FACTOR IM 25 KDA     
COMPND   6 SUBUNIT, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 21, NUDIX MOTIF
COMPND   7 21;                                                                  
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MOL_ID: 2;                                                           
COMPND  10 MOLECULE: RNA (5'-R(*UP*GP*UP*AP*AP*A)-3');                          
COMPND  11 CHAIN: C;                                                            
COMPND  12 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: CFIM25, CPSF25, CPSF5, NUDT21;                                 
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS;                       
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: HIS6-MBP FUSION VECTOR;                   
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES                                                       
KEYWDS    CPSF5, CF IM, MRNA PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN,        
KEYWDS   2 PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING-RNA COMPLEX    
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Q.YANG,G.M.GILMARTIN,S.DOUBLIE                                        
REVDAT   4   06-SEP-23 3MDI    1       REMARK                                   
REVDAT   3   21-JUL-10 3MDI    1       JRNL                                     
REVDAT   2   16-JUN-10 3MDI    1       JRNL                                     
REVDAT   1   02-JUN-10 3MDI    0                                                
JRNL        AUTH   Q.YANG,G.M.GILMARTIN,S.DOUBLIE                               
JRNL        TITL   STRUCTURAL BASIS OF UGUA RECOGNITION BY THE NUDIX PROTEIN    
JRNL        TITL 2 CFI(M)25 AND IMPLICATIONS FOR A REGULATORY ROLE IN MRNA 3'   
JRNL        TITL 3 PROCESSING.                                                  
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 107 10062 2010              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   20479262                                                     
JRNL        DOI    10.1073/PNAS.1000848107                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.07 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.6_289                                       
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : TWIN_LSQ_F                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.94                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.550                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 30752                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.183                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.233                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 6.560                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3808                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 18.5820 -  5.5730    0.93     2712   198  0.1790 0.2130        
REMARK   3     2  5.5730 -  4.4440    0.93     2702   196  0.1290 0.1680        
REMARK   3     3  4.4440 -  3.8880    0.94     2726   188  0.1290 0.1780        
REMARK   3     4  3.8880 -  3.5350    0.93     2721   192  0.1450 0.2320        
REMARK   3     5  3.5350 -  3.2830    0.94     2728   184  0.1640 0.2150        
REMARK   3     6  3.2830 -  3.0910    0.94     2717   186  0.1720 0.2150        
REMARK   3     7  3.0910 -  2.9360    0.93     2738   196  0.1840 0.2230        
REMARK   3     8  2.9360 -  2.8090    0.93     2701   194  0.1970 0.2550        
REMARK   3     9  2.8090 -  2.7010    0.94     2739   184  0.2040 0.2640        
REMARK   3    10  2.7010 -  2.6080    0.94     2710   187  0.1970 0.2630        
REMARK   3    11  2.6080 -  2.5270    0.94     2728   189  0.2030 0.2810        
REMARK   3    12  2.5270 -  2.4550    0.93     2692   193  0.2070 0.2580        
REMARK   3    13  2.4550 -  2.3900    0.93     2721   191  0.2130 0.2900        
REMARK   3    14  2.3900 -  2.3320    0.94     2754   175  0.2160 0.2490        
REMARK   3    15  2.3320 -  2.2790    0.93     2726   193  0.2210 0.2890        
REMARK   3    16  2.2790 -  2.2310    0.94     2690   185  0.2180 0.3210        
REMARK   3    17  2.2310 -  2.1860    0.93     2715   190  0.2190 0.2800        
REMARK   3    18  2.1860 -  2.1450    0.93     2749   192  0.2280 0.2550        
REMARK   3    19  2.1450 -  2.1070    0.93     2698   188  0.2360 0.2650        
REMARK   3    20  2.1070 -  2.0700    0.89     2584   189  0.2760 0.3170        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.40                                          
REMARK   3   B_SOL              : 48.58                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : NULL             
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL             
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 31.08                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 26.14                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.13500                                             
REMARK   3    B22 (A**2) : 0.79600                                              
REMARK   3    B33 (A**2) : 2.34000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: 0.0740                                                   
REMARK   3   OPERATOR: K,H,-L                                                   
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.006           3618                                  
REMARK   3   ANGLE     :  1.130           4949                                  
REMARK   3   CHIRALITY :  0.070            539                                  
REMARK   3   PLANARITY :  0.005            618                                  
REMARK   3   DIHEDRAL  : 17.231           1382                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: TWIN LAW: K,H,-L, TWIN PERCENTAGE 0.074   
REMARK   4                                                                      
REMARK   4 3MDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000058410.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 31-JUL-09                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 4.9                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RU300                       
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : MAR MIRRORS                        
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR SCANNER 345 MM PLATE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE, XDS                        
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30752                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.070                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.5                               
REMARK 200  DATA REDUNDANCY                : 6.800                              
REMARK 200  R MERGE                    (I) : 0.10400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.8200                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.15                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 87.3                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.90                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.54600                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 3BHO                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.84                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000, 0.2M SODIUM PHOSPHATE PH   
REMARK 280  4.9, 0.1M SODIUM ACETATE PH 5.0, VAPOR DIFFUSION, HANGING DROP,     
REMARK 280  TEMPERATURE 298K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       35.68100            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       48.08000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       36.01850            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       48.08000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       35.68100            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       36.01850            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 20000 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     VAL A     3                                                      
REMARK 465     VAL A     4                                                      
REMARK 465     PRO A     5                                                      
REMARK 465     PRO A     6                                                      
REMARK 465     ASN A     7                                                      
REMARK 465     ARG A     8                                                      
REMARK 465     SER A     9                                                      
REMARK 465     GLN A    10                                                      
REMARK 465     THR A    11                                                      
REMARK 465     GLY A    12                                                      
REMARK 465     TRP A    13                                                      
REMARK 465     PRO A    14                                                      
REMARK 465     ARG A    15                                                      
REMARK 465     GLY A    16                                                      
REMARK 465     VAL A    17                                                      
REMARK 465     THR A    18                                                      
REMARK 465     GLN A    19                                                      
REMARK 465     PHE A    20                                                      
REMARK 465     GLY A    21                                                      
REMARK 465     ASN A    22                                                      
REMARK 465     LYS A    23                                                      
REMARK 465     TYR A    24                                                      
REMARK 465     ILE A    25                                                      
REMARK 465     GLN A    26                                                      
REMARK 465     GLN A    27                                                      
REMARK 465     THR A    28                                                      
REMARK 465     MET B     1                                                      
REMARK 465     SER B     2                                                      
REMARK 465     VAL B     3                                                      
REMARK 465     VAL B     4                                                      
REMARK 465     PRO B     5                                                      
REMARK 465     PRO B     6                                                      
REMARK 465     ASN B     7                                                      
REMARK 465     ARG B     8                                                      
REMARK 465     SER B     9                                                      
REMARK 465     GLN B    10                                                      
REMARK 465     THR B    11                                                      
REMARK 465     GLY B    12                                                      
REMARK 465     TRP B    13                                                      
REMARK 465     PRO B    14                                                      
REMARK 465     ARG B    15                                                      
REMARK 465     GLY B    16                                                      
REMARK 465     VAL B    17                                                      
REMARK 465     THR B    18                                                      
REMARK 465     GLN B    19                                                      
REMARK 465     PHE B    20                                                      
REMARK 480                                                                      
REMARK 480 ZERO OCCUPANCY ATOM                                                  
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO                  
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS                
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;              
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):         
REMARK 480   M RES C SSEQI ATOMS                                                
REMARK 480     LYS A   29   CG   CD   CE   NZ                                   
REMARK 480     LEU A  218   CD1                                                 
REMARK 480     HIS B   89   CB   CG   ND1  CD2  CE1  NE2                        
REMARK 480     LYS B  192   CD   CE   NZ                                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 133       21.80    -76.35                                   
REMARK 500    PRO A 159       24.16    -76.97                                   
REMARK 500    GLN B 132       46.81    -84.92                                   
REMARK 500    PHE B 153       44.30    -79.61                                   
REMARK 500    PRO B 159       22.49    -74.66                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 228                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 228                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3MDG   RELATED DB: PDB                                   
REMARK 900 CF IM 25KDA STRUCTURE WITH RNA UUGUAU                                
REMARK 900 RELATED ID: 2CL3   RELATED DB: PDB                                   
REMARK 900 CF IM 25KDA STRUCTURE                                                
REMARK 900 RELATED ID: 2J8Q   RELATED DB: PDB                                   
REMARK 900 CF IM 25KDA STRUCTURE WITH SULFATE BOUND                             
REMARK 900 RELATED ID: 3BAP   RELATED DB: PDB                                   
REMARK 900 CF IM 25KDA STRUCTURE                                                
REMARK 900 RELATED ID: 3BHO   RELATED DB: PDB                                   
REMARK 900 CF IM 25KDA STRUCTURE WITH AP4A                                      
DBREF  3MDI A    1   227  UNP    O43809   CPSF5_HUMAN      1    227             
DBREF  3MDI B    1   227  UNP    O43809   CPSF5_HUMAN      1    227             
DBREF  3MDI C    1     6  PDB    3MDI     3MDI             1      6             
SEQRES   1 A  227  MET SER VAL VAL PRO PRO ASN ARG SER GLN THR GLY TRP          
SEQRES   2 A  227  PRO ARG GLY VAL THR GLN PHE GLY ASN LYS TYR ILE GLN          
SEQRES   3 A  227  GLN THR LYS PRO LEU THR LEU GLU ARG THR ILE ASN LEU          
SEQRES   4 A  227  TYR PRO LEU THR ASN TYR THR PHE GLY THR LYS GLU PRO          
SEQRES   5 A  227  LEU TYR GLU LYS ASP SER SER VAL ALA ALA ARG PHE GLN          
SEQRES   6 A  227  ARG MET ARG GLU GLU PHE ASP LYS ILE GLY MET ARG ARG          
SEQRES   7 A  227  THR VAL GLU GLY VAL LEU ILE VAL HIS GLU HIS ARG LEU          
SEQRES   8 A  227  PRO HIS VAL LEU LEU LEU GLN LEU GLY THR THR PHE PHE          
SEQRES   9 A  227  LYS LEU PRO GLY GLY GLU LEU ASN PRO GLY GLU ASP GLU          
SEQRES  10 A  227  VAL GLU GLY LEU LYS ARG LEU MET THR GLU ILE LEU GLY          
SEQRES  11 A  227  ARG GLN ASP GLY VAL LEU GLN ASP TRP VAL ILE ASP ASP          
SEQRES  12 A  227  CYS ILE GLY ASN TRP TRP ARG PRO ASN PHE GLU PRO PRO          
SEQRES  13 A  227  GLN TYR PRO TYR ILE PRO ALA HIS ILE THR LYS PRO LYS          
SEQRES  14 A  227  GLU HIS LYS LYS LEU PHE LEU VAL GLN LEU GLN GLU LYS          
SEQRES  15 A  227  ALA LEU PHE ALA VAL PRO LYS ASN TYR LYS LEU VAL ALA          
SEQRES  16 A  227  ALA PRO LEU PHE GLU LEU TYR ASP ASN ALA PRO GLY TYR          
SEQRES  17 A  227  GLY PRO ILE ILE SER SER LEU PRO GLN LEU LEU SER ARG          
SEQRES  18 A  227  PHE ASN PHE ILE TYR ASN                                      
SEQRES   1 B  227  MET SER VAL VAL PRO PRO ASN ARG SER GLN THR GLY TRP          
SEQRES   2 B  227  PRO ARG GLY VAL THR GLN PHE GLY ASN LYS TYR ILE GLN          
SEQRES   3 B  227  GLN THR LYS PRO LEU THR LEU GLU ARG THR ILE ASN LEU          
SEQRES   4 B  227  TYR PRO LEU THR ASN TYR THR PHE GLY THR LYS GLU PRO          
SEQRES   5 B  227  LEU TYR GLU LYS ASP SER SER VAL ALA ALA ARG PHE GLN          
SEQRES   6 B  227  ARG MET ARG GLU GLU PHE ASP LYS ILE GLY MET ARG ARG          
SEQRES   7 B  227  THR VAL GLU GLY VAL LEU ILE VAL HIS GLU HIS ARG LEU          
SEQRES   8 B  227  PRO HIS VAL LEU LEU LEU GLN LEU GLY THR THR PHE PHE          
SEQRES   9 B  227  LYS LEU PRO GLY GLY GLU LEU ASN PRO GLY GLU ASP GLU          
SEQRES  10 B  227  VAL GLU GLY LEU LYS ARG LEU MET THR GLU ILE LEU GLY          
SEQRES  11 B  227  ARG GLN ASP GLY VAL LEU GLN ASP TRP VAL ILE ASP ASP          
SEQRES  12 B  227  CYS ILE GLY ASN TRP TRP ARG PRO ASN PHE GLU PRO PRO          
SEQRES  13 B  227  GLN TYR PRO TYR ILE PRO ALA HIS ILE THR LYS PRO LYS          
SEQRES  14 B  227  GLU HIS LYS LYS LEU PHE LEU VAL GLN LEU GLN GLU LYS          
SEQRES  15 B  227  ALA LEU PHE ALA VAL PRO LYS ASN TYR LYS LEU VAL ALA          
SEQRES  16 B  227  ALA PRO LEU PHE GLU LEU TYR ASP ASN ALA PRO GLY TYR          
SEQRES  17 B  227  GLY PRO ILE ILE SER SER LEU PRO GLN LEU LEU SER ARG          
SEQRES  18 B  227  PHE ASN PHE ILE TYR ASN                                      
SEQRES   1 C    6    U   G   U   A   A   A                                      
HET    GOL  A 228       6                                                       
HET    GOL  B 228       6                                                       
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   4  GOL    2(C3 H8 O3)                                                  
FORMUL   6  HOH   *277(H2 O)                                                    
HELIX    1   1 PRO A   41  THR A   43  5                                   3    
HELIX    2   2 SER A   59  GLY A   75  1                                  17    
HELIX    3   3 ASP A  116  GLY A  130  1                                  15    
HELIX    4   4 LEU A  198  TYR A  202  1                                   5    
HELIX    5   5 ASN A  204  SER A  213  1                                  10    
HELIX    6   6 SER A  214  SER A  220  1                                   7    
HELIX    7   7 PRO B   41  THR B   43  5                                   3    
HELIX    8   8 SER B   59  ILE B   74  1                                  16    
HELIX    9   9 ASP B  116  GLY B  130  1                                  15    
HELIX   10  10 LEU B  198  ASN B  204  1                                   7    
HELIX   11  11 ALA B  205  GLY B  207  5                                   3    
HELIX   12  12 TYR B  208  SER B  213  1                                   6    
HELIX   13  13 SER B  214  SER B  220  1                                   7    
SHEET    1   A 2 THR A  36  LEU A  39  0                                        
SHEET    2   A 2 ASN A 223  TYR A 226  1  O  ILE A 225   N  LEU A  39           
SHEET    1   B 2 TYR A  45  LYS A  50  0                                        
SHEET    2   B 2 ALA A 183  PRO A 188  1  O  PHE A 185   N  GLY A  48           
SHEET    1   C 5 PHE A 103  LYS A 105  0                                        
SHEET    2   C 5 PRO A  92  LEU A  99 -1  N  LEU A  99   O  PHE A 103           
SHEET    3   C 5 ARG A  77  HIS A  87 -1  N  VAL A  86   O  HIS A  93           
SHEET    4   C 5 GLU A 170  GLN A 178  1  O  HIS A 171   N  ARG A  77           
SHEET    5   C 5 VAL A 140  ARG A 150 -1  N  TRP A 148   O  LYS A 172           
SHEET    1   D 4 GLY A 108  GLU A 110  0                                        
SHEET    2   D 4 ARG A  77  HIS A  87 -1  N  VAL A  80   O  GLY A 109           
SHEET    3   D 4 PRO A  92  LEU A  99 -1  O  HIS A  93   N  VAL A  86           
SHEET    4   D 4 LYS A 192  PRO A 197 -1  O  LYS A 192   N  GLN A  98           
SHEET    1   E 2 ARG B  35  LEU B  39  0                                        
SHEET    2   E 2 PHE B 222  TYR B 226  1  O  ASN B 223   N  ARG B  35           
SHEET    1   F 2 TYR B  45  LYS B  50  0                                        
SHEET    2   F 2 ALA B 183  PRO B 188  1  O  PHE B 185   N  GLY B  48           
SHEET    1   G 5 PHE B 103  LYS B 105  0                                        
SHEET    2   G 5 LEU B  91  LEU B  99 -1  N  LEU B  99   O  PHE B 103           
SHEET    3   G 5 ARG B  77  GLU B  88 -1  N  VAL B  86   O  HIS B  93           
SHEET    4   G 5 GLU B 170  GLN B 178  1  O  LYS B 173   N  GLU B  81           
SHEET    5   G 5 VAL B 140  ARG B 150 -1  N  TRP B 148   O  LYS B 172           
SHEET    1   H 4 GLY B 108  GLU B 110  0                                        
SHEET    2   H 4 ARG B  77  GLU B  88 -1  N  VAL B  80   O  GLY B 109           
SHEET    3   H 4 LEU B  91  LEU B  99 -1  O  HIS B  93   N  VAL B  86           
SHEET    4   H 4 LYS B 192  PRO B 197 -1  O  VAL B 194   N  LEU B  96           
SITE     1 AC1  6 GLU A  81  LYS A 105  LEU A 106  LYS A 172                    
SITE     2 AC1  6 ILE A 211    U C   1                                          
SITE     1 AC2  7 GLU B  81  PHE B 104  LYS B 105  LEU B 106                    
SITE     2 AC2  7 HOH B 263  HOH B 288    A C   5                               
CRYST1   71.362   72.037   96.160  90.00  90.00  90.00 P 21 21 21    8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014013  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.013882  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010399        0.00000