PDB Short entry for 3ME9 HEADER TRANSCRIPTION 31-MAR-10 3ME9 TITLE CRYSTAL STRUCTURE OF SGF29 IN COMPLEX WITH H3K4ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAGA-ASSOCIATED FACTOR 29 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 115-293; COMPND 5 SYNONYM: COILED-COIL DOMAIN-CONTAINING PROTEIN 101; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 2-9; COMPND 11 SYNONYM: H3K4ME3 8MER; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCDC101, SGF29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 14 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 15 ORGANISM_TAXID: 8355; SOURCE 16 OTHER_DETAILS: H3K4ME3 8MER KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, NUCLEUS, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION REGULATION, CHROMOSOMAL PROTEIN, DNA-BINDING, KEYWDS 3 NUCLEOSOME CORE EXPDTA X-RAY DIFFRACTION AUTHOR C.BIAN,W.TEMPEL,C.XU,Y.GUO,A.DONG,L.CROMBET,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 08-NOV-17 3ME9 1 REMARK REVDAT 3 03-AUG-11 3ME9 1 JRNL REVDAT 2 29-JUN-11 3ME9 1 JRNL REVDAT 1 28-APR-10 3ME9 0 JRNL AUTH C.BIAN,C.XU,J.RUAN,K.K.LEE,T.L.BURKE,W.TEMPEL,D.BARSYTE, JRNL AUTH 2 J.LI,M.WU,B.O.ZHOU,B.E.FLEHARTY,A.PAULSON,A.ALLALI-HASSANI, JRNL AUTH 3 J.Q.ZHOU,G.MER,P.A.GRANT,J.L.WORKMAN,J.ZANG,J.MIN JRNL TITL SGF29 BINDS HISTONE H3K4ME2/3 AND IS REQUIRED FOR SAGA JRNL TITL 2 COMPLEX RECRUITMENT AND HISTONE H3 ACETYLATION. JRNL REF EMBO J. V. 30 2829 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21685874 JRNL DOI 10.1038/EMBOJ.2011.193 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.719 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31700 REMARK 3 B22 (A**2) : -0.37200 REMARK 3 B33 (A**2) : 0.05600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3052 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2106 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4193 ; 1.563 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5143 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 7.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;28.565 ;23.504 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;12.679 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.335 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3425 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 734 ; 0.271 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3089 ; 1.645 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 2.564 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1093 ; 3.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ME9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-09; 05-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 19-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M AMMONIUM SULFATE, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.01900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.80950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.71700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.80950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.01900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.71700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 50.03800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 288 REMARK 465 GLU A 289 REMARK 465 PRO A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 LYS A 293 REMARK 465 GLY B 114 REMARK 465 ARG B 115 REMARK 465 LYS B 292 REMARK 465 LYS B 293 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN D 5 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 ARG A 157 CD NE CZ NH1 NH2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 139 CG OD1 OD2 REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 LYS B 167 NZ REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 LYS B 230 CE NZ REMARK 470 LYS B 288 NZ REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 231 -3.75 76.78 REMARK 500 ASP B 266 105.64 -160.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MEA RELATED DB: PDB REMARK 900 RELATED ID: 3MET RELATED DB: PDB REMARK 900 RELATED ID: 3MEU RELATED DB: PDB REMARK 900 RELATED ID: 3MEV RELATED DB: PDB REMARK 900 RELATED ID: 3MEW RELATED DB: PDB DBREF 3ME9 A 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 3ME9 B 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 3ME9 C 1 11 UNP Q92133 Q92133_XENLA 2 12 DBREF 3ME9 D 1 11 UNP Q92133 Q92133_XENLA 2 12 SEQADV 3ME9 GLY A 114 UNP Q96ES7 EXPRESSION TAG SEQADV 3ME9 GLY B 114 UNP Q96ES7 EXPRESSION TAG SEQRES 1 A 180 GLY ARG ARG GLY VAL LEU MSE THR LEU LEU GLN GLN SER SEQRES 2 A 180 ALA MSE THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 A 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 A 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 A 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 A 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 A 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 A 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 A 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 A 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 A 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 A 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 A 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 A 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 B 180 GLY ARG ARG GLY VAL LEU MSE THR LEU LEU GLN GLN SER SEQRES 2 B 180 ALA MSE THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 B 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 B 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 B 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 B 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 B 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 B 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 B 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 B 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 B 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 B 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 B 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 B 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 C 11 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR SEQRES 1 D 11 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR MODRES 3ME9 MSE A 120 MET SELENOMETHIONINE MODRES 3ME9 MSE A 128 MET SELENOMETHIONINE MODRES 3ME9 MSE B 120 MET SELENOMETHIONINE MODRES 3ME9 MSE B 128 MET SELENOMETHIONINE MODRES 3ME9 M3L C 4 LYS N-TRIMETHYLLYSINE MODRES 3ME9 M3L D 4 LYS N-TRIMETHYLLYSINE HET MSE A 120 8 HET MSE A 128 8 HET MSE B 120 8 HET MSE B 128 13 HET M3L C 4 12 HET M3L D 4 12 HET UNX A 1 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 5 1 HET UNX A 6 1 HET UNX A 10 1 HET GOL B 1 6 HET SO4 B 2 5 HET UNX B 294 1 HET UNX B 7 1 HET UNX B 8 1 HET UNX B 9 1 HET UNX B 11 1 HET SO4 C 12 5 HETNAM MSE SELENOMETHIONINE HETNAM M3L N-TRIMETHYLLYSINE HETNAM UNX UNKNOWN ATOM OR ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 UNX 11(X) FORMUL 11 GOL C3 H8 O3 FORMUL 12 SO4 2(O4 S 2-) FORMUL 19 HOH *302(H2 O) HELIX 1 1 GLY A 114 THR A 129 1 16 HELIX 2 2 ASP A 223 LEU A 227 5 5 HELIX 3 3 ALA A 280 ARG A 282 5 3 HELIX 4 4 ARG B 116 LEU B 130 1 15 HELIX 5 5 ASP B 223 LEU B 227 5 5 HELIX 6 6 ALA B 280 ARG B 282 5 3 HELIX 7 7 THR C 3 ARG C 8 1 6 SHEET 1 A 6 HIS A 203 SER A 206 0 SHEET 2 A 6 LYS A 189 ASP A 194 -1 N TYR A 190 O LEU A 205 SHEET 3 A 6 GLU A 173 SER A 184 -1 N VAL A 181 O GLU A 191 SHEET 4 A 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 A 6 TYR A 260 PHE A 264 -1 O SER A 261 N HIS A 250 SHEET 6 A 6 LEU A 277 VAL A 279 -1 O VAL A 279 N TYR A 260 SHEET 1 B 6 VAL A 210 PRO A 212 0 SHEET 2 B 6 LYS A 161 LYS A 167 -1 N ALA A 163 O ILE A 211 SHEET 3 B 6 GLU A 173 SER A 184 -1 O ILE A 176 N ALA A 164 SHEET 4 B 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 B 6 LEU A 233 LEU A 237 -1 N VAL A 234 O ALA A 247 SHEET 6 B 6 VAL A 284 ALA A 286 -1 O VAL A 285 N LEU A 235 SHEET 1 C 6 ARG B 202 SER B 206 0 SHEET 2 C 6 LYS B 189 ASP B 194 -1 N VAL B 192 O HIS B 203 SHEET 3 C 6 GLU B 173 SER B 184 -1 N VAL B 181 O GLU B 191 SHEET 4 C 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 C 6 TYR B 260 PHE B 264 -1 O SER B 261 N HIS B 250 SHEET 6 C 6 LEU B 277 VAL B 279 -1 O LEU B 277 N VAL B 262 SHEET 1 D 6 VAL B 210 PRO B 212 0 SHEET 2 D 6 LYS B 161 LYS B 167 -1 N ALA B 163 O ILE B 211 SHEET 3 D 6 GLU B 173 SER B 184 -1 O GLN B 174 N VAL B 166 SHEET 4 D 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 D 6 LEU B 233 LEU B 237 -1 N VAL B 234 O ALA B 247 SHEET 6 D 6 VAL B 284 ALA B 286 -1 O VAL B 285 N LEU B 235 LINK C LEU A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N THR A 121 1555 1555 1.33 LINK C ALA A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N THR A 129 1555 1555 1.33 LINK C LEU B 119 N MSE B 120 1555 1555 1.32 LINK C MSE B 120 N THR B 121 1555 1555 1.33 LINK C ALA B 127 N MSE B 128 1555 1555 1.34 LINK C MSE B 128 N THR B 129 1555 1555 1.33 LINK C THR C 3 N M3L C 4 1555 1555 1.33 LINK C M3L C 4 N GLN C 5 1555 1555 1.32 LINK C THR D 3 N M3L D 4 1555 1555 1.32 SITE 1 AC1 9 HOH B 48 GLN B 124 LEU B 237 TYR B 238 SITE 2 AC1 9 PRO B 239 GLN B 240 THR B 241 HOH B 299 SITE 3 AC1 9 HOH B 318 SITE 1 AC2 7 ARG A 115 LYS A 167 HOH A 329 ARG C 2 SITE 2 AC2 7 THR C 6 HOH C 81 HOH C 153 SITE 1 AC3 4 HOH B 19 SER B 206 ARG B 208 ARG B 209 CRYST1 50.038 65.434 105.619 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009468 0.00000