PDB Short entry for 3MEU HEADER TRANSCRIPTION 31-MAR-10 3MEU TITLE CRYSTAL STRUCTURE OF SGF29 IN COMPLEX WITH H3R2ME2SK4ME3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAGA-ASSOCIATED FACTOR 29 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 115-293; COMPND 5 SYNONYM: COILED-COIL DOMAIN-CONTAINING PROTEIN 101; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 2-14; COMPND 11 SYNONYM: H3R2ME2SK4ME3 14MER; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCDC101, SGF29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 14 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA; SOURCE 15 ORGANISM_TAXID: 8355; SOURCE 16 OTHER_DETAILS: H3R2ME2SK4ME3 14MER KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, NUCLEUS, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION REGULATION, CHROMOSOMAL PROTEIN, DNA-BINDING, KEYWDS 3 NUCLEOSOME CORE EXPDTA X-RAY DIFFRACTION AUTHOR C.B.BIAN,C.XU,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 22-NOV-23 3MEU 1 REMARK REVDAT 4 06-SEP-23 3MEU 1 REMARK SEQADV LINK REVDAT 3 03-AUG-11 3MEU 1 JRNL REVDAT 2 29-JUN-11 3MEU 1 JRNL REVDAT 1 28-APR-10 3MEU 0 JRNL AUTH C.BIAN,C.XU,J.RUAN,K.K.LEE,T.L.BURKE,W.TEMPEL,D.BARSYTE, JRNL AUTH 2 J.LI,M.WU,B.O.ZHOU,B.E.FLEHARTY,A.PAULSON,A.ALLALI-HASSANI, JRNL AUTH 3 J.Q.ZHOU,G.MER,P.A.GRANT,J.L.WORKMAN,J.ZANG,J.MIN JRNL TITL SGF29 BINDS HISTONE H3K4ME2/3 AND IS REQUIRED FOR SAGA JRNL TITL 2 COMPLEX RECRUITMENT AND HISTONE H3 ACETYLATION. JRNL REF EMBO J. V. 30 2829 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21685874 JRNL DOI 10.1038/EMBOJ.2011.193 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 84189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 301 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 467 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2940 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4013 ; 1.420 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 7.431 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;29.393 ;23.858 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;13.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.415 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2249 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 0.837 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2950 ; 1.500 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1117 ; 2.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1058 ; 3.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8400 -11.8720 18.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0516 REMARK 3 T33: 0.0503 T12: 0.0049 REMARK 3 T13: 0.0106 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.2574 L22: 0.2244 REMARK 3 L33: 0.2097 L12: 0.0388 REMARK 3 L13: -0.0801 L23: 0.0322 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0079 S13: 0.0038 REMARK 3 S21: -0.0332 S22: -0.0029 S23: -0.0032 REMARK 3 S31: -0.0201 S32: -0.0137 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 291 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8570 -9.7010 34.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0458 REMARK 3 T33: 0.0468 T12: -0.0015 REMARK 3 T13: 0.0018 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1641 L22: 1.0523 REMARK 3 L33: 0.8422 L12: 0.0683 REMARK 3 L13: 0.0079 L23: 0.3262 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0195 S13: 0.0094 REMARK 3 S21: -0.0048 S22: 0.0149 S23: 0.0373 REMARK 3 S31: 0.0255 S32: 0.0558 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7660 -19.3810 5.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: 0.0462 REMARK 3 T33: 0.0420 T12: 0.0093 REMARK 3 T13: 0.0338 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 6.5309 L22: 1.8163 REMARK 3 L33: 4.2798 L12: 3.5521 REMARK 3 L13: -2.5711 L23: -1.3860 REMARK 3 S TENSOR REMARK 3 S11: -0.2232 S12: 0.3679 S13: -0.4577 REMARK 3 S21: -0.1289 S22: 0.1853 S23: -0.2432 REMARK 3 S31: 0.0376 S32: -0.1814 S33: 0.0379 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 4 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6270 -16.8070 46.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.0397 REMARK 3 T33: 0.1567 T12: -0.0034 REMARK 3 T13: 0.0636 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 19.8092 L22: 17.6993 REMARK 3 L33: 13.5532 L12: -10.5753 REMARK 3 L13: -17.0869 L23: 8.0163 REMARK 3 S TENSOR REMARK 3 S11: -0.5603 S12: -0.2335 S13: -0.8559 REMARK 3 S21: 1.2692 S22: -0.0209 S23: 1.6559 REMARK 3 S31: 0.4787 S32: 0.2655 S33: 0.5812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 55.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3ME9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-28% PEG3350, 0.1M BIS-TRIS PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.00200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.74150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.00200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.74150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 289 REMARK 465 PRO A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 LYS A 293 REMARK 465 GLY B 114 REMARK 465 ARG B 115 REMARK 465 LYS B 292 REMARK 465 LYS B 293 REMARK 465 THR C 6 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 TYR C 14 REMARK 465 GLN D 5 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 TYR D 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 139 CG OD1 OD2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2MR C 2 C THR C 3 N 0.141 REMARK 500 ALA D 1 C 2MR D 2 N 0.224 REMARK 500 2MR D 2 C THR D 3 N 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 197 12.76 59.19 REMARK 500 GLU B 231 -3.71 78.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ME9 RELATED DB: PDB REMARK 900 RELATED ID: 3MEA RELATED DB: PDB REMARK 900 RELATED ID: 3MET RELATED DB: PDB REMARK 900 RELATED ID: 3MEV RELATED DB: PDB REMARK 900 RELATED ID: 3MEW RELATED DB: PDB DBREF 3MEU A 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 3MEU B 115 293 UNP Q96ES7 SGF29_HUMAN 115 293 DBREF 3MEU C 1 13 UNP Q92133 Q92133_XENLA 2 14 DBREF 3MEU D 1 13 UNP Q92133 Q92133_XENLA 2 14 SEQADV 3MEU GLY A 114 UNP Q96ES7 INSERTION SEQADV 3MEU GLY B 114 UNP Q96ES7 INSERTION SEQADV 3MEU TYR C 14 UNP Q92133 INSERTION SEQADV 3MEU TYR D 14 UNP Q92133 INSERTION SEQRES 1 A 180 GLY ARG ARG GLY VAL LEU MSE THR LEU LEU GLN GLN SER SEQRES 2 A 180 ALA MSE THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 A 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 A 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 A 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 A 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 A 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 A 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 A 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 A 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 A 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 A 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 A 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 A 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 B 180 GLY ARG ARG GLY VAL LEU MSE THR LEU LEU GLN GLN SER SEQRES 2 B 180 ALA MSE THR LEU PRO LEU TRP ILE GLY LYS PRO GLY ASP SEQRES 3 B 180 LYS PRO PRO PRO LEU CYS GLY ALA ILE PRO ALA SER GLY SEQRES 4 B 180 ASP TYR VAL ALA ARG PRO GLY ASP LYS VAL ALA ALA ARG SEQRES 5 B 180 VAL LYS ALA VAL ASP GLY ASP GLU GLN TRP ILE LEU ALA SEQRES 6 B 180 GLU VAL VAL SER TYR SER HIS ALA THR ASN LYS TYR GLU SEQRES 7 B 180 VAL ASP ASP ILE ASP GLU GLU GLY LYS GLU ARG HIS THR SEQRES 8 B 180 LEU SER ARG ARG ARG VAL ILE PRO LEU PRO GLN TRP LYS SEQRES 9 B 180 ALA ASN PRO GLU THR ASP PRO GLU ALA LEU PHE GLN LYS SEQRES 10 B 180 GLU GLN LEU VAL LEU ALA LEU TYR PRO GLN THR THR CYS SEQRES 11 B 180 PHE TYR ARG ALA LEU ILE HIS ALA PRO PRO GLN ARG PRO SEQRES 12 B 180 GLN ASP ASP TYR SER VAL LEU PHE GLU ASP THR SER TYR SEQRES 13 B 180 ALA ASP GLY TYR SER PRO PRO LEU ASN VAL ALA GLN ARG SEQRES 14 B 180 TYR VAL VAL ALA CYS LYS GLU PRO LYS LYS LYS SEQRES 1 C 14 ALA 2MR THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 C 14 TYR SEQRES 1 D 14 ALA 2MR THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 14 TYR MODRES 3MEU MSE A 120 MET SELENOMETHIONINE MODRES 3MEU MSE A 128 MET SELENOMETHIONINE MODRES 3MEU MSE B 120 MET SELENOMETHIONINE MODRES 3MEU MSE B 128 MET SELENOMETHIONINE MODRES 3MEU 2MR C 2 ARG N3, N4-DIMETHYLARGININE MODRES 3MEU M3L C 4 LYS N-TRIMETHYLLYSINE MODRES 3MEU 2MR D 2 ARG N3, N4-DIMETHYLARGININE MODRES 3MEU M3L D 4 LYS N-TRIMETHYLLYSINE HET MSE A 120 8 HET MSE A 128 8 HET MSE B 120 13 HET MSE B 128 13 HET 2MR C 2 13 HET M3L C 4 12 HET 2MR D 2 13 HET M3L D 4 12 HET SO4 A 500 5 HET SO4 B 500 5 HET SO4 C 501 5 HETNAM MSE SELENOMETHIONINE HETNAM 2MR N3, N4-DIMETHYLARGININE HETNAM M3L N-TRIMETHYLLYSINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 2MR 2(C8 H18 N4 O2) FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *467(H2 O) HELIX 1 1 GLY A 114 LEU A 130 1 17 HELIX 2 2 ASP A 223 LEU A 227 5 5 HELIX 3 3 ALA A 280 ARG A 282 5 3 HELIX 4 4 ARG B 116 LEU B 130 1 15 HELIX 5 5 ASP B 223 LEU B 227 5 5 HELIX 6 6 ALA B 280 ARG B 282 5 3 SHEET 1 A 6 HIS A 203 SER A 206 0 SHEET 2 A 6 LYS A 189 ASP A 194 -1 N TYR A 190 O LEU A 205 SHEET 3 A 6 GLU A 173 SER A 184 -1 N VAL A 181 O GLU A 191 SHEET 4 A 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 A 6 TYR A 260 PHE A 264 -1 O SER A 261 N HIS A 250 SHEET 6 A 6 LEU A 277 VAL A 279 -1 O VAL A 279 N TYR A 260 SHEET 1 B 6 VAL A 210 PRO A 212 0 SHEET 2 B 6 LYS A 161 LYS A 167 -1 N ALA A 163 O ILE A 211 SHEET 3 B 6 GLU A 173 SER A 184 -1 O ILE A 176 N ALA A 164 SHEET 4 B 6 CYS A 243 ALA A 251 -1 O PHE A 244 N TRP A 175 SHEET 5 B 6 LEU A 233 LEU A 237 -1 N VAL A 234 O ALA A 247 SHEET 6 B 6 VAL A 284 ALA A 286 -1 O VAL A 285 N LEU A 235 SHEET 1 C 6 ARG B 202 SER B 206 0 SHEET 2 C 6 LYS B 189 ASP B 194 -1 N VAL B 192 O HIS B 203 SHEET 3 C 6 GLU B 173 SER B 184 -1 N VAL B 181 O GLU B 191 SHEET 4 C 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 C 6 TYR B 260 PHE B 264 -1 O SER B 261 N HIS B 250 SHEET 6 C 6 LEU B 277 VAL B 279 -1 O VAL B 279 N TYR B 260 SHEET 1 D 6 VAL B 210 PRO B 212 0 SHEET 2 D 6 LYS B 161 LYS B 167 -1 N ALA B 163 O ILE B 211 SHEET 3 D 6 GLU B 173 SER B 184 -1 O GLN B 174 N VAL B 166 SHEET 4 D 6 CYS B 243 ALA B 251 -1 O PHE B 244 N TRP B 175 SHEET 5 D 6 LEU B 233 LEU B 237 -1 N VAL B 234 O ALA B 247 SHEET 6 D 6 VAL B 284 ALA B 286 -1 O VAL B 285 N LEU B 235 LINK C LEU A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N THR A 121 1555 1555 1.33 LINK C ALA A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N THR A 129 1555 1555 1.33 LINK C LEU B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N THR B 121 1555 1555 1.34 LINK C ALA B 127 N MSE B 128 1555 1555 1.34 LINK C MSE B 128 N THR B 129 1555 1555 1.32 LINK C ALA C 1 N 2MR C 2 1555 1555 1.46 LINK C 2MR C 2 N THR C 3 1555 1555 1.48 LINK C THR C 3 N M3L C 4 1555 1555 1.33 LINK C M3L C 4 N GLN C 5 1555 1555 1.33 LINK C ALA D 1 N 2MR D 2 1555 1555 1.56 LINK C 2MR D 2 N THR D 3 1555 1555 1.52 LINK C THR D 3 N M3L D 4 1555 1555 1.32 SITE 1 AC1 4 HOH A 96 SER A 206 ARG A 208 ARG A 209 SITE 1 AC2 7 HOH B 47 SER B 206 ARG B 208 ARG B 209 SITE 2 AC2 7 HOH B 304 HOH B 358 HOH B 416 SITE 1 AC3 5 ARG A 115 ALA C 1 2MR C 2 HOH C 61 SITE 2 AC3 5 HOH C 362 CRYST1 50.140 65.483 106.004 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009434 0.00000