PDB Short entry for 3MLJ HEADER OXIDOREDUCTASE 16-APR-10 3MLJ TITLE REDUCED (CU+) PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE (PHM) TITLE 2 WITH BOUND CARBON MONOOXIDE (CO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 43-356, MONOOXYGENASE DOMAIN; COMPND 5 SYNONYM: PAM, PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE, PHM; COMPND 6 EC: 1.14.17.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 STRAIN: SPRAGUE-DAWLEY; SOURCE 6 GENE: PAM; SOURCE 7 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CHO DG44; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCIS KEYWDS OXIDOREDUCTASE, MONOOXYGENASE, BIOACTIVE PEPTIDE ACTIVATION, KEYWDS 2 ASCORBATE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.PRIGGE,E.E.CHUFAN,B.A.EIPPER,R.E.MAINS,L.M.AMZEL REVDAT 2 06-SEP-23 3MLJ 1 REMARK LINK REVDAT 1 02-MAR-11 3MLJ 0 JRNL AUTH E.E.CHUFAN,S.T.PRIGGE,X.SIEBERT,B.A.EIPPER,R.E.MAINS, JRNL AUTH 2 L.M.AMZEL JRNL TITL DIFFERENTIAL REACTIVITY BETWEEN TWO COPPER SITES IN JRNL TITL 2 PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE JRNL REF J.AM.CHEM.SOC. V. 132 15565 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20958070 JRNL DOI 10.1021/JA103117R REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 53.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1PHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION: 1.8 MM NICL2, 100MM REMARK 280 SODIUM CACODYLATE PH=5.5, AND 3MM SODIUM AZIDE. THE CRYSTAL WAS REMARK 280 SOAKED IN 5MM ASCORBIC ACID AND THEN CO-SOAKED IN A CHAMBER AT REMARK 280 50 PSI CO FOR 15 MINUTES., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.61300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.87200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.87200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.61300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 VAL A 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 180 CZ ARG A 180 NH2 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -159.59 -163.24 REMARK 500 THR A 105 -21.29 -140.53 REMARK 500 THR A 130 -67.30 -95.16 REMARK 500 HIS A 244 -153.89 -96.07 REMARK 500 PHE A 285 126.68 -37.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 358 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CMO A 1 O REMARK 620 2 HIS A 242 NE2 132.7 REMARK 620 3 HIS A 244 NE2 104.3 111.0 REMARK 620 4 MET A 314 SD 92.0 104.0 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 359 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CMO A 2 O REMARK 620 2 HIS A 235 NE2 168.4 REMARK 620 3 HOH A 363 O 88.8 93.4 REMARK 620 4 HOH A 364 O 89.3 89.4 174.8 REMARK 620 5 HOH A 461 O 83.9 84.5 95.8 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 357 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 HIS A 108 ND1 148.4 REMARK 620 3 HIS A 172 ND1 99.3 106.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PHM RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM REMARK 900 RELATED ID: 3MIB RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND NITRITE REMARK 900 RELATED ID: 3MIC RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND AZIDE REMARK 900 RELATED ID: 3MID RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND AZIDE OBTAINED BY SOAKING (100MM REMARK 900 NAN3) REMARK 900 RELATED ID: 3MIE RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND AZIDE OBTAINED BY SOAKING (50MM NAN3) REMARK 900 RELATED ID: 3MIF RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND CARBON MONOXIDE REMARK 900 RELATED ID: 3MIG RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND NITRITE, OBTAINED IN THE PRESENCE OF REMARK 900 SUBSTRATE REMARK 900 RELATED ID: 3MIH RELATED DB: PDB REMARK 900 OXIDIZED (CU2+) PHM WITH BOUND AZIDE, OBTAINED IN THE PRESENCE OF REMARK 900 SUBSTRATE REMARK 900 RELATED ID: 3MLK RELATED DB: PDB REMARK 900 REDUCED (CU+) PHM WITH BOUND NITRITE REMARK 900 RELATED ID: 3MLL RELATED DB: PDB REMARK 900 REDUCED (CU+) PHM WITH BOUND AZIDE DBREF 3MLJ A 43 356 UNP P14925 AMD_RAT 43 356 SEQRES 1 A 314 PHE SER ASN GLU CYS LEU GLY THR ILE GLY PRO VAL THR SEQRES 2 A 314 PRO LEU ASP ALA SER ASP PHE ALA LEU ASP ILE ARG MET SEQRES 3 A 314 PRO GLY VAL THR PRO LYS GLU SER ASP THR TYR PHE CYS SEQRES 4 A 314 MET SER MET ARG LEU PRO VAL ASP GLU GLU ALA PHE VAL SEQRES 5 A 314 ILE ASP PHE LYS PRO ARG ALA SER MET ASP THR VAL HIS SEQRES 6 A 314 HIS MET LEU LEU PHE GLY CYS ASN MET PRO SER SER THR SEQRES 7 A 314 GLY SER TYR TRP PHE CYS ASP GLU GLY THR CYS THR ASP SEQRES 8 A 314 LYS ALA ASN ILE LEU TYR ALA TRP ALA ARG ASN ALA PRO SEQRES 9 A 314 PRO THR ARG LEU PRO LYS GLY VAL GLY PHE ARG VAL GLY SEQRES 10 A 314 GLY GLU THR GLY SER LYS TYR PHE VAL LEU GLN VAL HIS SEQRES 11 A 314 TYR GLY ASP ILE SER ALA PHE ARG ASP ASN HIS LYS ASP SEQRES 12 A 314 CYS SER GLY VAL SER VAL HIS LEU THR ARG VAL PRO GLN SEQRES 13 A 314 PRO LEU ILE ALA GLY MET TYR LEU MET MET SER VAL ASP SEQRES 14 A 314 THR VAL ILE PRO PRO GLY GLU LYS VAL VAL ASN ALA ASP SEQRES 15 A 314 ILE SER CYS GLN TYR LYS MET TYR PRO MET HIS VAL PHE SEQRES 16 A 314 ALA TYR ARG VAL HIS THR HIS HIS LEU GLY LYS VAL VAL SEQRES 17 A 314 SER GLY TYR ARG VAL ARG ASN GLY GLN TRP THR LEU ILE SEQRES 18 A 314 GLY ARG GLN ASN PRO GLN LEU PRO GLN ALA PHE TYR PRO SEQRES 19 A 314 VAL GLU HIS PRO VAL ASP VAL THR PHE GLY ASP ILE LEU SEQRES 20 A 314 ALA ALA ARG CYS VAL PHE THR GLY GLU GLY ARG THR GLU SEQRES 21 A 314 ALA THR HIS ILE GLY GLY THR SER SER ASP GLU MET CYS SEQRES 22 A 314 ASN LEU TYR ILE MET TYR TYR MET GLU ALA LYS TYR ALA SEQRES 23 A 314 LEU SER PHE MET THR CYS THR LYS ASN VAL ALA PRO ASP SEQRES 24 A 314 MET PHE ARG THR ILE PRO ALA GLU ALA ASN ILE PRO ILE SEQRES 25 A 314 PRO VAL HET CU A 357 1 HET CU A 358 1 HET NI A 359 1 HET CMO A 1 2 HET CMO A 2 2 HET ACT A 360 4 HET GOL A 361 6 HET GOL A 362 6 HET GOL A 3 6 HETNAM CU COPPER (II) ION HETNAM NI NICKEL (II) ION HETNAM CMO CARBON MONOXIDE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU 2(CU 2+) FORMUL 4 NI NI 2+ FORMUL 5 CMO 2(C O) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *153(H2 O) HELIX 1 1 ILE A 176 ASN A 182 5 7 HELIX 2 2 PRO A 340 ILE A 346 5 7 HELIX 3 3 PRO A 347 ILE A 352 5 6 SHEET 1 A 9 VAL A 54 PRO A 56 0 SHEET 2 A 9 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 A 9 GLY A 188 THR A 194 -1 O VAL A 191 N LEU A 64 SHEET 4 A 9 ALA A 92 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 5 A 9 VAL A 154 VAL A 158 -1 O VAL A 158 N ALA A 92 SHEET 6 A 9 LEU A 200 MET A 208 1 O ALA A 202 N GLY A 155 SHEET 7 A 9 ASN A 316 GLU A 324 -1 O ILE A 319 N TYR A 205 SHEET 8 A 9 MET A 234 HIS A 242 -1 N ARG A 240 O TYR A 318 SHEET 9 A 9 TYR A 275 VAL A 283 -1 O TYR A 275 N TYR A 239 SHEET 1 B 7 VAL A 54 PRO A 56 0 SHEET 2 B 7 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 B 7 GLY A 188 THR A 194 -1 O VAL A 191 N LEU A 64 SHEET 4 B 7 ALA A 92 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 5 B 7 VAL A 154 VAL A 158 -1 O VAL A 158 N ALA A 92 SHEET 6 B 7 LEU A 200 MET A 208 1 O ALA A 202 N GLY A 155 SHEET 7 B 7 PHE A 331 CYS A 334 1 O CYS A 334 N LEU A 206 SHEET 1 C 5 TRP A 124 PHE A 125 0 SHEET 2 C 5 THR A 78 ARG A 85 -1 N CYS A 81 O TRP A 124 SHEET 3 C 5 TYR A 166 TYR A 173 -1 O VAL A 171 N PHE A 80 SHEET 4 C 5 VAL A 106 CYS A 114 -1 N LEU A 110 O GLN A 170 SHEET 5 C 5 ASN A 136 ALA A 142 -1 O TRP A 141 N MET A 109 SHEET 1 D 2 VAL A 213 ILE A 214 0 SHEET 2 D 2 THR A 304 HIS A 305 -1 O THR A 304 N ILE A 214 SHEET 1 E 4 VAL A 221 GLN A 228 0 SHEET 2 E 4 ILE A 288 PHE A 295 -1 O ALA A 291 N ILE A 225 SHEET 3 E 4 GLY A 247 ARG A 256 -1 N VAL A 255 O ILE A 288 SHEET 4 E 4 GLN A 259 GLN A 266 -1 O GLY A 264 N GLY A 252 SSBOND 1 CYS A 47 CYS A 186 1555 1555 2.85 SSBOND 2 CYS A 81 CYS A 126 1555 1555 2.03 SSBOND 3 CYS A 114 CYS A 131 1555 1555 2.03 SSBOND 4 CYS A 227 CYS A 334 1555 1555 2.03 SSBOND 5 CYS A 293 CYS A 315 1555 1555 2.01 LINK O CMO A 1 CU CU A 358 1555 1555 2.52 LINK O CMO A 2 NI NI A 359 1555 1555 2.59 LINK ND1 HIS A 107 CU CU A 357 1555 1555 1.99 LINK ND1 HIS A 108 CU CU A 357 1555 1555 2.00 LINK ND1 HIS A 172 CU CU A 357 1555 1555 2.00 LINK NE2 HIS A 235 NI NI A 359 1555 1555 2.04 LINK NE2 HIS A 242 CU CU A 358 1555 1555 2.02 LINK NE2 HIS A 244 CU CU A 358 1555 1555 2.02 LINK SD MET A 314 CU CU A 358 1555 1555 2.60 LINK NI NI A 359 O HOH A 363 1555 1555 2.22 LINK NI NI A 359 O HOH A 364 1555 1555 2.59 LINK NI NI A 359 O HOH A 461 1555 1555 2.77 SITE 1 AC1 3 HIS A 107 HIS A 108 HIS A 172 SITE 1 AC2 4 CMO A 1 HIS A 242 HIS A 244 MET A 314 SITE 1 AC3 6 CMO A 2 HIS A 235 HIS A 305 HOH A 363 SITE 2 AC3 6 HOH A 364 HOH A 461 SITE 1 AC4 5 HIS A 242 HIS A 244 GLY A 308 MET A 314 SITE 2 AC4 5 CU A 358 SITE 1 AC5 7 HIS A 235 HIS A 305 ASP A 312 NI A 359 SITE 2 AC5 7 HOH A 363 HOH A 364 HOH A 461 SITE 1 AC6 3 ARG A 240 HIS A 242 TYR A 318 SITE 1 AC7 7 HOH A 18 HOH A 25 HOH A 31 LEU A 138 SITE 2 AC7 7 TYR A 139 THR A 148 MET A 320 SITE 1 AC8 9 HOH A 6 HOH A 14 ASN A 136 PHE A 156 SITE 2 AC8 9 ARG A 157 GLY A 163 SER A 164 SER A 330 SITE 3 AC8 9 PHE A 331 SITE 1 AC9 7 TYR A 205 GLN A 228 LYS A 230 MET A 231 SITE 2 AC9 7 MET A 332 THR A 333 HOH A 410 CRYST1 69.226 68.860 81.744 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012233 0.00000