PDB Short entry for 3MLQ HEADER TRANSFERASE/TRANSCRIPTION 18-APR-10 3MLQ TITLE CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS TRANSCRIPTION-REPAIR TITLE 2 COUPLING FACTOR RNA POLYMERASE INTERACTING DOMAIN WITH THE THERMUS TITLE 3 AQUATICUS RNA POLYMERASE BETA1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: BETA1 DOMAIN (UNP RESIDUES 17-139 AND 334-395); COMPND 5 SYNONYM: RNAP SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA, RNA COMPND 6 POLYMERASE SUBUNIT BETA; COMPND 7 EC: 2.7.7.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TRANSCRIPTION-REPAIR COUPLING FACTOR; COMPND 11 CHAIN: E, F, G, H; COMPND 12 FRAGMENT: RNA POLYMERASE INTERACTING DOMAIN (UNP RESIDUES 321-387); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: RPOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A-BASED; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 11 ORGANISM_TAXID: 262724; SOURCE 12 STRAIN: HB27; SOURCE 13 GENE: MFD, TT_C0533; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET21A-BASED KEYWDS TUDOR, TRANSFERASE-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.DARST,L.F.WESTBLADE,E.A.CAMPBELL REVDAT 6 03-APR-24 3MLQ 1 REMARK REVDAT 5 21-FEB-24 3MLQ 1 REMARK SEQADV REVDAT 4 17-JUL-19 3MLQ 1 REMARK REVDAT 3 02-AUG-17 3MLQ 1 SOURCE REMARK REVDAT 2 19-JAN-11 3MLQ 1 JRNL REVDAT 1 13-OCT-10 3MLQ 0 JRNL AUTH L.F.WESTBLADE,E.A.CAMPBELL,C.PUKHRAMBAM,J.C.PADOVAN, JRNL AUTH 2 B.E.NICKELS,V.LAMOUR,S.A.DARST JRNL TITL STRUCTURAL BASIS FOR THE BACTERIAL TRANSCRIPTION-REPAIR JRNL TITL 2 COUPLING FACTOR/RNA POLYMERASE INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 38 8357 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20702425 JRNL DOI 10.1093/NAR/GKQ692 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 25538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.19000 REMARK 3 B22 (A**2) : -14.19000 REMARK 3 B33 (A**2) : 28.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.720 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6980 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4902 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9416 ; 1.236 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11897 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 867 ; 9.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;34.944 ;23.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1212 ;20.464 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 65 ;18.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1049 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7733 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1404 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4371 ; 0.267 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1796 ; 0.042 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6977 ; 0.485 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 0.429 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2439 ; 0.727 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 17 A 392 5 REMARK 3 1 B 17 B 392 5 REMARK 3 1 C 17 C 392 5 REMARK 3 1 D 17 D 392 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1024 ; 0.350 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1024 ; 0.360 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1024 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1024 ; 0.330 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1309 ; 0.890 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 1309 ; 1.050 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 1309 ; 0.820 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 1309 ; 0.950 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1024 ; 0.140 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1024 ; 0.130 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1024 ; 0.130 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1024 ; 0.130 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1309 ; 0.190 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1309 ; 0.190 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 1309 ; 0.190 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 1309 ; 0.180 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : E F G H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 E 334 E 368 5 REMARK 3 1 F 334 F 368 5 REMARK 3 1 G 334 G 368 5 REMARK 3 1 H 334 H 368 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 E (A): 109 ; 0.520 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 F (A): 109 ; 0.480 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 G (A): 109 ; 0.410 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 H (A): 109 ; 0.550 ; 0.500 REMARK 3 LOOSE POSITIONAL 2 E (A): 165 ; 1.030 ; 5.000 REMARK 3 LOOSE POSITIONAL 2 F (A): 165 ; 1.190 ; 5.000 REMARK 3 LOOSE POSITIONAL 2 G (A): 165 ; 0.950 ; 5.000 REMARK 3 LOOSE POSITIONAL 2 H (A): 165 ; 0.930 ; 5.000 REMARK 3 MEDIUM THERMAL 2 E (A**2): 109 ; 0.360 ; 2.000 REMARK 3 MEDIUM THERMAL 2 F (A**2): 109 ; 0.340 ; 2.000 REMARK 3 MEDIUM THERMAL 2 G (A**2): 109 ; 0.370 ; 2.000 REMARK 3 MEDIUM THERMAL 2 H (A**2): 109 ; 1.020 ; 2.000 REMARK 3 LOOSE THERMAL 2 E (A**2): 165 ; 0.180 ;10.000 REMARK 3 LOOSE THERMAL 2 F (A**2): 165 ; 0.170 ;10.000 REMARK 3 LOOSE THERMAL 2 G (A**2): 165 ; 0.180 ;10.000 REMARK 3 LOOSE THERMAL 2 H (A**2): 165 ; 0.390 ;10.000 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.522 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 121.9660 15.1720 73.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.0401 REMARK 3 T33: 0.1693 T12: 0.0050 REMARK 3 T13: -0.0309 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.0369 L22: 1.8885 REMARK 3 L33: 1.6966 L12: 0.5571 REMARK 3 L13: -0.4338 L23: -0.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0598 S13: -0.1528 REMARK 3 S21: -0.0364 S22: 0.0008 S23: -0.0127 REMARK 3 S31: 0.1389 S32: 0.1374 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 392 REMARK 3 ORIGIN FOR THE GROUP (A): 108.4600 37.3570 67.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0863 REMARK 3 T33: 0.1836 T12: -0.0155 REMARK 3 T13: 0.0126 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.0825 L22: 1.7231 REMARK 3 L33: 0.6712 L12: 0.2000 REMARK 3 L13: 0.6359 L23: 0.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.2226 S13: 0.1932 REMARK 3 S21: 0.0655 S22: -0.0872 S23: -0.0108 REMARK 3 S31: -0.1533 S32: 0.0291 S33: 0.0700 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 394 REMARK 3 ORIGIN FOR THE GROUP (A): 144.2970 37.5280 99.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0082 REMARK 3 T33: 0.1558 T12: 0.0110 REMARK 3 T13: -0.0187 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.2949 L22: 2.7856 REMARK 3 L33: 2.4673 L12: 0.9586 REMARK 3 L13: -1.2839 L23: -0.7318 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.0366 S13: -0.0157 REMARK 3 S21: 0.0453 S22: 0.0338 S23: 0.0011 REMARK 3 S31: 0.1386 S32: -0.0262 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 393 REMARK 3 ORIGIN FOR THE GROUP (A): 122.5010 51.5490 105.6270 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0614 REMARK 3 T33: 0.1834 T12: 0.0218 REMARK 3 T13: -0.0200 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.1725 L22: 2.5739 REMARK 3 L33: 0.9063 L12: 0.7998 REMARK 3 L13: 0.2841 L23: 0.6308 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.1188 S13: -0.1297 REMARK 3 S21: -0.1859 S22: 0.0404 S23: 0.1290 REMARK 3 S31: 0.0829 S32: -0.0998 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 332 E 369 REMARK 3 ORIGIN FOR THE GROUP (A): 96.7890 4.5650 77.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.3101 REMARK 3 T33: 0.3959 T12: -0.0589 REMARK 3 T13: -0.0594 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.3704 L22: 7.9022 REMARK 3 L33: 5.4293 L12: -2.6217 REMARK 3 L13: 0.4912 L23: -0.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: 0.0385 S13: -0.1942 REMARK 3 S21: 0.2805 S22: 0.0529 S23: -0.5433 REMARK 3 S31: 0.2157 S32: 0.1007 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 333 F 369 REMARK 3 ORIGIN FOR THE GROUP (A): 135.2630 46.8900 66.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.4184 REMARK 3 T33: 0.5129 T12: -0.0010 REMARK 3 T13: 0.0158 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 4.1128 L22: 5.1306 REMARK 3 L33: 6.8367 L12: -0.8363 REMARK 3 L13: 2.0856 L23: -2.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.1085 S13: 0.3951 REMARK 3 S21: -0.1761 S22: 0.0922 S23: 0.0619 REMARK 3 S31: -0.3182 S32: 0.6913 S33: -0.1171 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 329 G 368 REMARK 3 ORIGIN FOR THE GROUP (A): 153.8950 63.3510 95.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.1318 REMARK 3 T33: 0.3512 T12: -0.0489 REMARK 3 T13: -0.0235 T23: -0.0870 REMARK 3 L TENSOR REMARK 3 L11: 8.2925 L22: 3.2741 REMARK 3 L33: 5.4905 L12: -0.9877 REMARK 3 L13: -2.3116 L23: 0.5224 REMARK 3 S TENSOR REMARK 3 S11: -0.2015 S12: 0.0222 S13: -0.2004 REMARK 3 S21: 0.3682 S22: 0.1745 S23: -0.2120 REMARK 3 S31: 0.0240 S32: 0.5151 S33: 0.0270 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 334 H 375 REMARK 3 ORIGIN FOR THE GROUP (A): 110.7080 25.6810 105.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.2076 REMARK 3 T33: 0.5036 T12: -0.0839 REMARK 3 T13: 0.0384 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 8.9398 L22: 3.8710 REMARK 3 L33: 3.4978 L12: -1.5140 REMARK 3 L13: 0.4219 L23: -3.2814 REMARK 3 S TENSOR REMARK 3 S11: -0.2088 S12: 0.2577 S13: 0.0669 REMARK 3 S21: 0.1374 S22: 0.4134 S23: 0.4600 REMARK 3 S31: -0.4832 S32: -0.2218 S33: -0.2045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: THERMUS AQUATICUS RNA POLYMERASE BETA-SUBUNIT REMARK 200 BETA1 DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 1.6 M DI-POTASSIUM REMARK 280 AMMONIUM PHOSPHATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.15050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.72575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.57525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 LYS A 395 REMARK 465 MET B 16 REMARK 465 ASP B 58 REMARK 465 LYS B 59 REMARK 465 GLY B 60 REMARK 465 LYS B 61 REMARK 465 GLN B 393 REMARK 465 PHE B 394 REMARK 465 LYS B 395 REMARK 465 MET C 16 REMARK 465 ASP C 58 REMARK 465 LYS C 59 REMARK 465 GLY C 60 REMARK 465 LYS C 61 REMARK 465 LYS C 395 REMARK 465 LYS D 59 REMARK 465 PHE D 394 REMARK 465 LYS D 395 REMARK 465 GLY E 317 REMARK 465 PRO E 318 REMARK 465 HIS E 319 REMARK 465 MET E 320 REMARK 465 PRO E 321 REMARK 465 GLY E 322 REMARK 465 ASP E 323 REMARK 465 TYR E 324 REMARK 465 LEU E 325 REMARK 465 ILE E 326 REMARK 465 HIS E 327 REMARK 465 PRO E 328 REMARK 465 GLU E 329 REMARK 465 HIS E 330 REMARK 465 GLY E 331 REMARK 465 LEU E 370 REMARK 465 LEU E 371 REMARK 465 LYS E 372 REMARK 465 ARG E 373 REMARK 465 HIS E 374 REMARK 465 PRO E 375 REMARK 465 GLY E 376 REMARK 465 THR E 377 REMARK 465 THR E 378 REMARK 465 ASP E 379 REMARK 465 ASP E 380 REMARK 465 PRO E 381 REMARK 465 PRO E 382 REMARK 465 GLU E 383 REMARK 465 LEU E 384 REMARK 465 SER E 385 REMARK 465 SER E 386 REMARK 465 LEU E 387 REMARK 465 GLY F 317 REMARK 465 PRO F 318 REMARK 465 HIS F 319 REMARK 465 MET F 320 REMARK 465 PRO F 321 REMARK 465 GLY F 322 REMARK 465 ASP F 323 REMARK 465 TYR F 324 REMARK 465 LEU F 325 REMARK 465 ILE F 326 REMARK 465 HIS F 327 REMARK 465 PRO F 328 REMARK 465 GLU F 329 REMARK 465 HIS F 330 REMARK 465 GLY F 331 REMARK 465 VAL F 332 REMARK 465 ARG F 341 REMARK 465 GLU F 342 REMARK 465 VAL F 343 REMARK 465 LEU F 344 REMARK 465 GLY F 345 REMARK 465 VAL F 346 REMARK 465 LYS F 347 REMARK 465 LEU F 370 REMARK 465 LEU F 371 REMARK 465 LYS F 372 REMARK 465 ARG F 373 REMARK 465 HIS F 374 REMARK 465 PRO F 375 REMARK 465 GLY F 376 REMARK 465 THR F 377 REMARK 465 THR F 378 REMARK 465 ASP F 379 REMARK 465 ASP F 380 REMARK 465 PRO F 381 REMARK 465 PRO F 382 REMARK 465 GLU F 383 REMARK 465 LEU F 384 REMARK 465 SER F 385 REMARK 465 SER F 386 REMARK 465 LEU F 387 REMARK 465 GLY G 317 REMARK 465 PRO G 318 REMARK 465 HIS G 319 REMARK 465 MET G 320 REMARK 465 PRO G 321 REMARK 465 GLY G 322 REMARK 465 ASP G 323 REMARK 465 TYR G 324 REMARK 465 LEU G 325 REMARK 465 ILE G 326 REMARK 465 HIS G 327 REMARK 465 PRO G 328 REMARK 465 PRO G 369 REMARK 465 LEU G 370 REMARK 465 LEU G 371 REMARK 465 LYS G 372 REMARK 465 ARG G 373 REMARK 465 HIS G 374 REMARK 465 PRO G 375 REMARK 465 GLY G 376 REMARK 465 THR G 377 REMARK 465 THR G 378 REMARK 465 ASP G 379 REMARK 465 ASP G 380 REMARK 465 PRO G 381 REMARK 465 PRO G 382 REMARK 465 GLU G 383 REMARK 465 LEU G 384 REMARK 465 SER G 385 REMARK 465 SER G 386 REMARK 465 LEU G 387 REMARK 465 GLY H 317 REMARK 465 PRO H 318 REMARK 465 HIS H 319 REMARK 465 MET H 320 REMARK 465 PRO H 321 REMARK 465 GLY H 322 REMARK 465 ASP H 323 REMARK 465 TYR H 324 REMARK 465 LEU H 325 REMARK 465 ILE H 326 REMARK 465 HIS H 327 REMARK 465 PRO H 328 REMARK 465 GLU H 329 REMARK 465 HIS H 330 REMARK 465 GLY H 331 REMARK 465 VAL H 332 REMARK 465 GLY H 333 REMARK 465 GLY H 376 REMARK 465 THR H 377 REMARK 465 THR H 378 REMARK 465 ASP H 379 REMARK 465 ASP H 380 REMARK 465 PRO H 381 REMARK 465 PRO H 382 REMARK 465 GLU H 383 REMARK 465 LEU H 384 REMARK 465 SER H 385 REMARK 465 SER H 386 REMARK 465 LEU H 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 PHE A 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 37 CG CD OE1 OE2 REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 PHE C 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 ARG D 353 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 356 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 371 CG CD CE NZ REMARK 470 GLN D 393 CG CD OE1 NE2 REMARK 470 GLU E 342 CG CD OE1 OE2 REMARK 470 LYS E 356 CG CD CE NZ REMARK 470 GLU E 358 CG CD OE1 OE2 REMARK 470 GLU E 366 CG CD OE1 OE2 REMARK 470 GLN E 367 CG CD OE1 NE2 REMARK 470 LEU F 338 CG CD1 CD2 REMARK 470 VAL F 365 CG1 CG2 REMARK 470 GLU F 366 CG CD OE1 OE2 REMARK 470 GLN F 367 CG CD OE1 NE2 REMARK 470 GLU G 329 CG CD OE1 OE2 REMARK 470 THR G 340 OG1 CG2 REMARK 470 LEU G 344 CG CD1 CD2 REMARK 470 LYS G 347 CG CD CE NZ REMARK 470 ARG G 348 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 356 CG CD CE NZ REMARK 470 GLN G 367 CG CD OE1 NE2 REMARK 470 LEU G 368 CG CD1 CD2 REMARK 470 LEU H 344 CG CD1 CD2 REMARK 470 LYS H 347 CG CD CE NZ REMARK 470 LYS H 356 CG CD CE NZ REMARK 470 GLU H 358 CG CD OE1 OE2 REMARK 470 HIS H 374 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR E 355 O GLY E 357 1.83 REMARK 500 NH2 ARG A 334 OD1 ASP A 342 2.03 REMARK 500 O LEU B 30 OH TYR B 71 2.09 REMARK 500 OE1 GLN C 99 NH2 ARG G 341 2.09 REMARK 500 NH1 ARG D 134 OG SER D 389 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 353 OG SER B 392 4665 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 350 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 353 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG E 354 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLY E 357 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 PRO F 364 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -53.91 -121.23 REMARK 500 ASP A 111 132.38 -172.53 REMARK 500 LEU B 69 -55.92 -120.25 REMARK 500 ASN B 130 49.39 36.47 REMARK 500 PRO B 364 -37.64 -37.96 REMARK 500 SER B 389 -168.91 -160.43 REMARK 500 GLN C 31 57.28 36.71 REMARK 500 ASP C 87 31.98 75.79 REMARK 500 GLN C 393 121.82 -39.89 REMARK 500 GLN D 31 41.58 38.59 REMARK 500 ASP D 33 44.57 -103.22 REMARK 500 LYS D 61 -124.62 -133.73 REMARK 500 VAL D 336 -39.66 -36.54 REMARK 500 PRO D 364 -34.98 -38.79 REMARK 500 THR D 366 29.66 -77.93 REMARK 500 GLU F 358 -30.00 -142.65 REMARK 500 ARG G 348 -175.33 -177.68 REMARK 500 LEU H 344 -39.91 -38.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 52 PRO A 53 80.69 REMARK 500 GLY A 57 ASP A 58 -105.36 REMARK 500 GLN A 139 GLY A 332 31.74 REMARK 500 THR B 51 PHE B 52 -148.16 REMARK 500 PHE B 52 PRO B 53 130.20 REMARK 500 GLN B 139 GLY B 332 143.38 REMARK 500 PHE C 52 PRO C 53 33.72 REMARK 500 SER C 392 GLN C 393 -134.64 REMARK 500 LYS E 347 ARG E 348 147.41 REMARK 500 LYS E 356 GLY E 357 -145.64 REMARK 500 GLN F 367 LEU F 368 139.67 REMARK 500 LEU H 370 LEU H 371 -106.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 DBREF 3MLQ A 17 139 UNP Q9KWU7 RPOB_THEAQ 17 139 DBREF 3MLQ A 334 395 UNP Q9KWU7 RPOB_THEAQ 334 395 DBREF 3MLQ B 17 139 UNP Q9KWU7 RPOB_THEAQ 17 139 DBREF 3MLQ B 334 395 UNP Q9KWU7 RPOB_THEAQ 334 395 DBREF 3MLQ C 17 139 UNP Q9KWU7 RPOB_THEAQ 17 139 DBREF 3MLQ C 334 395 UNP Q9KWU7 RPOB_THEAQ 334 395 DBREF 3MLQ D 17 139 UNP Q9KWU7 RPOB_THEAQ 17 139 DBREF 3MLQ D 334 395 UNP Q9KWU7 RPOB_THEAQ 334 395 DBREF 3MLQ E 321 387 UNP Q72KB4 Q72KB4_THET2 321 387 DBREF 3MLQ F 321 387 UNP Q72KB4 Q72KB4_THET2 321 387 DBREF 3MLQ G 321 387 UNP Q72KB4 Q72KB4_THET2 321 387 DBREF 3MLQ H 321 387 UNP Q72KB4 Q72KB4_THET2 321 387 SEQADV 3MLQ MET A 16 UNP Q9KWU7 INITIATING METHIONINE SEQADV 3MLQ GLY A 332 UNP Q9KWU7 LINKER SEQADV 3MLQ GLY A 333 UNP Q9KWU7 LINKER SEQADV 3MLQ MET B 16 UNP Q9KWU7 INITIATING METHIONINE SEQADV 3MLQ GLY B 332 UNP Q9KWU7 LINKER SEQADV 3MLQ GLY B 333 UNP Q9KWU7 LINKER SEQADV 3MLQ MET C 16 UNP Q9KWU7 INITIATING METHIONINE SEQADV 3MLQ GLY C 332 UNP Q9KWU7 LINKER SEQADV 3MLQ GLY C 333 UNP Q9KWU7 LINKER SEQADV 3MLQ MET D 16 UNP Q9KWU7 INITIATING METHIONINE SEQADV 3MLQ GLY D 332 UNP Q9KWU7 LINKER SEQADV 3MLQ GLY D 333 UNP Q9KWU7 LINKER SEQADV 3MLQ GLY E 317 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ PRO E 318 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ HIS E 319 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ MET E 320 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ GLY F 317 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ PRO F 318 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ HIS F 319 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ MET F 320 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ GLY G 317 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ PRO G 318 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ HIS G 319 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ MET G 320 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ GLY H 317 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ PRO H 318 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ HIS H 319 UNP Q72KB4 EXPRESSION TAG SEQADV 3MLQ MET H 320 UNP Q72KB4 EXPRESSION TAG SEQRES 1 A 188 MET PRO LEU THR GLU ILE GLN VAL GLU SER TYR LYS LYS SEQRES 2 A 188 ALA LEU GLN ALA ASP VAL PRO PRO GLU LYS ARG GLU ASN SEQRES 3 A 188 VAL GLY ILE GLN ALA ALA PHE LYS GLU THR PHE PRO ILE SEQRES 4 A 188 GLU GLU GLY ASP LYS GLY LYS GLY GLY LEU VAL LEU ASP SEQRES 5 A 188 PHE LEU GLU TYR ARG ILE GLY ASP PRO PRO PHE SER GLN SEQRES 6 A 188 ASP GLU CYS ARG GLU LYS ASP LEU THR TYR GLN ALA PRO SEQRES 7 A 188 LEU TYR ALA ARG LEU GLN LEU ILE HIS LYS ASP THR GLY SEQRES 8 A 188 LEU ILE LYS GLU ASP GLU VAL PHE LEU GLY HIS LEU PRO SEQRES 9 A 188 LEU MET THR GLU ASP GLY SER PHE ILE ILE ASN GLY ALA SEQRES 10 A 188 ASP ARG VAL ILE VAL SER GLN GLY GLY ARG THR VAL GLY SEQRES 11 A 188 GLU LEU MET ALA ASP GLN PHE ARG VAL GLY LEU ALA ARG SEQRES 12 A 188 LEU ALA ARG GLY VAL ARG GLU ARG MET VAL MET GLY SER SEQRES 13 A 188 PRO ASP THR LEU THR PRO ALA LYS LEU VAL ASN SER ARG SEQRES 14 A 188 PRO LEU GLU ALA ALA LEU ARG GLU PHE PHE SER ARG SER SEQRES 15 A 188 GLN LEU SER GLN PHE LYS SEQRES 1 B 188 MET PRO LEU THR GLU ILE GLN VAL GLU SER TYR LYS LYS SEQRES 2 B 188 ALA LEU GLN ALA ASP VAL PRO PRO GLU LYS ARG GLU ASN SEQRES 3 B 188 VAL GLY ILE GLN ALA ALA PHE LYS GLU THR PHE PRO ILE SEQRES 4 B 188 GLU GLU GLY ASP LYS GLY LYS GLY GLY LEU VAL LEU ASP SEQRES 5 B 188 PHE LEU GLU TYR ARG ILE GLY ASP PRO PRO PHE SER GLN SEQRES 6 B 188 ASP GLU CYS ARG GLU LYS ASP LEU THR TYR GLN ALA PRO SEQRES 7 B 188 LEU TYR ALA ARG LEU GLN LEU ILE HIS LYS ASP THR GLY SEQRES 8 B 188 LEU ILE LYS GLU ASP GLU VAL PHE LEU GLY HIS LEU PRO SEQRES 9 B 188 LEU MET THR GLU ASP GLY SER PHE ILE ILE ASN GLY ALA SEQRES 10 B 188 ASP ARG VAL ILE VAL SER GLN GLY GLY ARG THR VAL GLY SEQRES 11 B 188 GLU LEU MET ALA ASP GLN PHE ARG VAL GLY LEU ALA ARG SEQRES 12 B 188 LEU ALA ARG GLY VAL ARG GLU ARG MET VAL MET GLY SER SEQRES 13 B 188 PRO ASP THR LEU THR PRO ALA LYS LEU VAL ASN SER ARG SEQRES 14 B 188 PRO LEU GLU ALA ALA LEU ARG GLU PHE PHE SER ARG SER SEQRES 15 B 188 GLN LEU SER GLN PHE LYS SEQRES 1 C 188 MET PRO LEU THR GLU ILE GLN VAL GLU SER TYR LYS LYS SEQRES 2 C 188 ALA LEU GLN ALA ASP VAL PRO PRO GLU LYS ARG GLU ASN SEQRES 3 C 188 VAL GLY ILE GLN ALA ALA PHE LYS GLU THR PHE PRO ILE SEQRES 4 C 188 GLU GLU GLY ASP LYS GLY LYS GLY GLY LEU VAL LEU ASP SEQRES 5 C 188 PHE LEU GLU TYR ARG ILE GLY ASP PRO PRO PHE SER GLN SEQRES 6 C 188 ASP GLU CYS ARG GLU LYS ASP LEU THR TYR GLN ALA PRO SEQRES 7 C 188 LEU TYR ALA ARG LEU GLN LEU ILE HIS LYS ASP THR GLY SEQRES 8 C 188 LEU ILE LYS GLU ASP GLU VAL PHE LEU GLY HIS LEU PRO SEQRES 9 C 188 LEU MET THR GLU ASP GLY SER PHE ILE ILE ASN GLY ALA SEQRES 10 C 188 ASP ARG VAL ILE VAL SER GLN GLY GLY ARG THR VAL GLY SEQRES 11 C 188 GLU LEU MET ALA ASP GLN PHE ARG VAL GLY LEU ALA ARG SEQRES 12 C 188 LEU ALA ARG GLY VAL ARG GLU ARG MET VAL MET GLY SER SEQRES 13 C 188 PRO ASP THR LEU THR PRO ALA LYS LEU VAL ASN SER ARG SEQRES 14 C 188 PRO LEU GLU ALA ALA LEU ARG GLU PHE PHE SER ARG SER SEQRES 15 C 188 GLN LEU SER GLN PHE LYS SEQRES 1 D 188 MET PRO LEU THR GLU ILE GLN VAL GLU SER TYR LYS LYS SEQRES 2 D 188 ALA LEU GLN ALA ASP VAL PRO PRO GLU LYS ARG GLU ASN SEQRES 3 D 188 VAL GLY ILE GLN ALA ALA PHE LYS GLU THR PHE PRO ILE SEQRES 4 D 188 GLU GLU GLY ASP LYS GLY LYS GLY GLY LEU VAL LEU ASP SEQRES 5 D 188 PHE LEU GLU TYR ARG ILE GLY ASP PRO PRO PHE SER GLN SEQRES 6 D 188 ASP GLU CYS ARG GLU LYS ASP LEU THR TYR GLN ALA PRO SEQRES 7 D 188 LEU TYR ALA ARG LEU GLN LEU ILE HIS LYS ASP THR GLY SEQRES 8 D 188 LEU ILE LYS GLU ASP GLU VAL PHE LEU GLY HIS LEU PRO SEQRES 9 D 188 LEU MET THR GLU ASP GLY SER PHE ILE ILE ASN GLY ALA SEQRES 10 D 188 ASP ARG VAL ILE VAL SER GLN GLY GLY ARG THR VAL GLY SEQRES 11 D 188 GLU LEU MET ALA ASP GLN PHE ARG VAL GLY LEU ALA ARG SEQRES 12 D 188 LEU ALA ARG GLY VAL ARG GLU ARG MET VAL MET GLY SER SEQRES 13 D 188 PRO ASP THR LEU THR PRO ALA LYS LEU VAL ASN SER ARG SEQRES 14 D 188 PRO LEU GLU ALA ALA LEU ARG GLU PHE PHE SER ARG SER SEQRES 15 D 188 GLN LEU SER GLN PHE LYS SEQRES 1 E 71 GLY PRO HIS MET PRO GLY ASP TYR LEU ILE HIS PRO GLU SEQRES 2 E 71 HIS GLY VAL GLY GLN TYR LEU GLY LEU GLU THR ARG GLU SEQRES 3 E 71 VAL LEU GLY VAL LYS ARG ASP TYR LEU VAL LEU ARG TYR SEQRES 4 E 71 LYS GLY GLU GLY LYS LEU TYR LEU PRO VAL GLU GLN LEU SEQRES 5 E 71 PRO LEU LEU LYS ARG HIS PRO GLY THR THR ASP ASP PRO SEQRES 6 E 71 PRO GLU LEU SER SER LEU SEQRES 1 F 71 GLY PRO HIS MET PRO GLY ASP TYR LEU ILE HIS PRO GLU SEQRES 2 F 71 HIS GLY VAL GLY GLN TYR LEU GLY LEU GLU THR ARG GLU SEQRES 3 F 71 VAL LEU GLY VAL LYS ARG ASP TYR LEU VAL LEU ARG TYR SEQRES 4 F 71 LYS GLY GLU GLY LYS LEU TYR LEU PRO VAL GLU GLN LEU SEQRES 5 F 71 PRO LEU LEU LYS ARG HIS PRO GLY THR THR ASP ASP PRO SEQRES 6 F 71 PRO GLU LEU SER SER LEU SEQRES 1 G 71 GLY PRO HIS MET PRO GLY ASP TYR LEU ILE HIS PRO GLU SEQRES 2 G 71 HIS GLY VAL GLY GLN TYR LEU GLY LEU GLU THR ARG GLU SEQRES 3 G 71 VAL LEU GLY VAL LYS ARG ASP TYR LEU VAL LEU ARG TYR SEQRES 4 G 71 LYS GLY GLU GLY LYS LEU TYR LEU PRO VAL GLU GLN LEU SEQRES 5 G 71 PRO LEU LEU LYS ARG HIS PRO GLY THR THR ASP ASP PRO SEQRES 6 G 71 PRO GLU LEU SER SER LEU SEQRES 1 H 71 GLY PRO HIS MET PRO GLY ASP TYR LEU ILE HIS PRO GLU SEQRES 2 H 71 HIS GLY VAL GLY GLN TYR LEU GLY LEU GLU THR ARG GLU SEQRES 3 H 71 VAL LEU GLY VAL LYS ARG ASP TYR LEU VAL LEU ARG TYR SEQRES 4 H 71 LYS GLY GLU GLY LYS LEU TYR LEU PRO VAL GLU GLN LEU SEQRES 5 H 71 PRO LEU LEU LYS ARG HIS PRO GLY THR THR ASP ASP PRO SEQRES 6 H 71 PRO GLU LEU SER SER LEU HET PO4 A 1 5 HETNAM PO4 PHOSPHATE ION FORMUL 9 PO4 O4 P 3- HELIX 1 1 LEU A 18 GLN A 31 1 14 HELIX 2 2 PRO A 35 ARG A 39 5 5 HELIX 3 3 VAL A 42 PHE A 52 1 11 HELIX 4 4 SER A 79 LYS A 86 1 8 HELIX 5 5 THR A 335 GLY A 362 1 28 HELIX 6 6 SER A 363 LEU A 367 5 5 HELIX 7 7 THR A 368 VAL A 373 1 6 HELIX 8 8 SER A 375 ARG A 388 1 14 HELIX 9 9 PRO B 17 GLN B 31 1 15 HELIX 10 10 PRO B 35 ARG B 39 5 5 HELIX 11 11 VAL B 42 PHE B 52 1 11 HELIX 12 12 SER B 79 ASP B 87 1 9 HELIX 13 13 THR B 335 GLY B 362 1 28 HELIX 14 14 SER B 363 LEU B 367 5 5 HELIX 15 15 THR B 368 VAL B 373 1 6 HELIX 16 16 SER B 375 ARG B 388 1 14 HELIX 17 17 PRO C 17 GLN C 31 1 15 HELIX 18 18 PRO C 35 ARG C 39 5 5 HELIX 19 19 VAL C 42 GLU C 50 1 9 HELIX 20 20 SER C 79 ASP C 87 1 9 HELIX 21 21 THR C 335 GLY C 362 1 28 HELIX 22 22 THR C 368 VAL C 373 1 6 HELIX 23 23 SER C 375 SER C 387 1 13 HELIX 24 24 MET D 16 GLN D 31 1 16 HELIX 25 25 PRO D 35 ARG D 39 5 5 HELIX 26 26 VAL D 42 PHE D 52 1 11 HELIX 27 27 SER D 79 LYS D 86 1 8 HELIX 28 28 THR D 335 GLY D 362 1 28 HELIX 29 29 SER D 363 LEU D 367 5 5 HELIX 30 30 THR D 368 VAL D 373 1 6 HELIX 31 31 SER D 375 ARG D 388 1 14 SHEET 1 A 7 ILE A 54 GLU A 56 0 SHEET 2 A 7 LEU A 64 ILE A 73 -1 O LEU A 64 N GLU A 56 SHEET 3 A 7 GLN A 91 HIS A 102 -1 O ILE A 101 N VAL A 65 SHEET 4 A 7 ILE A 108 PRO A 119 -1 O GLY A 116 N LEU A 94 SHEET 5 A 7 GLY E 359 PRO E 364 -1 O TYR E 362 N ILE A 108 SHEET 6 A 7 VAL E 346 TYR E 355 -1 N LEU E 351 O LEU E 363 SHEET 7 A 7 GLY E 333 VAL E 343 -1 N ARG E 341 O ARG E 348 SHEET 1 B 3 PHE A 127 ILE A 129 0 SHEET 2 B 3 ALA A 132 VAL A 135 -1 O ARG A 134 N PHE A 127 SHEET 3 B 3 GLN A 390 LEU A 391 -1 O GLN A 390 N VAL A 135 SHEET 1 C 7 PRO B 53 GLU B 56 0 SHEET 2 C 7 LEU B 64 ILE B 73 -1 O LEU B 66 N ILE B 54 SHEET 3 C 7 GLN B 91 HIS B 102 -1 O ARG B 97 N GLU B 70 SHEET 4 C 7 ILE B 108 PRO B 119 -1 O VAL B 113 N ALA B 96 SHEET 5 C 7 GLY F 359 PRO F 364 -1 O TYR F 362 N ILE B 108 SHEET 6 C 7 TYR F 350 TYR F 355 -1 N LEU F 353 O LEU F 361 SHEET 7 C 7 GLN F 334 GLU F 339 -1 N GLN F 334 O ARG F 354 SHEET 1 D 3 PHE B 127 ILE B 129 0 SHEET 2 D 3 ALA B 132 VAL B 135 -1 O ARG B 134 N PHE B 127 SHEET 3 D 3 GLN B 390 LEU B 391 -1 O GLN B 390 N VAL B 135 SHEET 1 E 7 ILE C 54 GLU C 56 0 SHEET 2 E 7 LEU C 64 ILE C 73 -1 O LEU C 66 N ILE C 54 SHEET 3 E 7 GLN C 91 HIS C 102 -1 O TYR C 95 N ARG C 72 SHEET 4 E 7 ILE C 108 PRO C 119 -1 O LYS C 109 N LEU C 100 SHEET 5 E 7 LYS G 360 PRO G 364 -1 O TYR G 362 N ILE C 108 SHEET 6 E 7 TYR G 350 TYR G 355 -1 N LEU G 351 O LEU G 363 SHEET 7 E 7 GLY G 333 GLU G 339 -1 N GLU G 339 O TYR G 350 SHEET 1 F 3 PHE C 127 ILE C 129 0 SHEET 2 F 3 ALA C 132 VAL C 135 -1 O ARG C 134 N PHE C 127 SHEET 3 F 3 GLN C 390 LEU C 391 -1 O GLN C 390 N VAL C 135 SHEET 1 G 7 ILE D 54 GLU D 55 0 SHEET 2 G 7 LEU D 64 ILE D 73 -1 O LEU D 66 N ILE D 54 SHEET 3 G 7 GLN D 91 HIS D 102 -1 O TYR D 95 N ARG D 72 SHEET 4 G 7 ILE D 108 PRO D 119 -1 O LYS D 109 N LEU D 100 SHEET 5 G 7 LYS H 360 PRO H 364 -1 O TYR H 362 N ILE D 108 SHEET 6 G 7 LYS H 347 ARG H 354 -1 N LEU H 353 O LEU H 361 SHEET 7 G 7 TYR H 335 GLU H 342 -1 N GLY H 337 O VAL H 352 SHEET 1 H 3 PHE D 127 ILE D 129 0 SHEET 2 H 3 ALA D 132 VAL D 135 -1 O ARG D 134 N PHE D 127 SHEET 3 H 3 GLN D 390 LEU D 391 -1 O GLN D 390 N VAL D 135 CISPEP 1 GLN C 139 GLY C 332 0 1.82 CISPEP 2 PHE D 52 PRO D 53 0 9.08 CISPEP 3 GLN D 139 GLY D 332 0 9.13 SITE 1 AC1 5 GLN A 343 ARG A 350 GLU A 384 LEU B 18 SITE 2 AC1 5 THR B 19 CRYST1 106.585 106.585 122.301 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008177 0.00000