PDB Short entry for 3MSX HEADER PROTEIN BINDING 29-APR-10 3MSX TITLE CRYSTAL STRUCTURE OF RHOA.GDP.MGF3 IN COMPLEX WITH GAP DOMAIN OF TITLE 2 ARHGAP20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RHO CDNA CLONE 12, H12; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 20; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: GAP DOMAIN; COMPND 12 SYNONYM: RHO-TYPE GTPASE-ACTIVATING PROTEIN 20; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARH12, ARHA, RHO12, RHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ARHGAP20, KIAA1391; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN-PROTEN COMPLEX, TRANSITION STATE, GTPASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.UTEPBERGENOV,D.R.COOPER,U.DEREWENDA,Z.S.DEREWENDA REVDAT 4 21-FEB-24 3MSX 1 REMARK REVDAT 3 06-OCT-21 3MSX 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3MSX 1 REMARK REVDAT 1 16-MAR-11 3MSX 0 JRNL AUTH D.UTEPBERGENOV,D.R.COOPER,U.DEREWENDA,A.V.SOMLYO, JRNL AUTH 2 Z.S.DEREWENDA JRNL TITL MECHANISM OF MOLECULAR SPECIFICITY OF RHOGAP DOMAINS TOWARDS JRNL TITL 2 SMALL GTPASES OF RHOA FAMILY. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 41890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2229 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3031 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4112 ; 1.503 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 5.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;35.383 ;25.035 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;14.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2271 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1392 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2129 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 2.344 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3009 ; 2.895 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 4.872 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1102 ; 5.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97166 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION DROP WAS 1:1 MIXTURE REMARK 280 OF PROTEIN DISSOLVED IN 20 MM TRIS, PH 8.5, 100 MM NACL, 5 MM REMARK 280 NAF, 5 MM MGCL2, 5MM 2-MERCAPTOETHANOL AND 20 W/V% PEG 8000, 0.2 REMARK 280 M NACL, 0.17 M NH4CL, 0.1 M PHOSPHATE CITRATE BUFFER. THE REMARK 280 CRYSTALLIZATION RESERVOIR WAS 20 W/V% PEG 8000, 0.2 M NACL, 0.17 REMARK 280 M NH4CL, 0.1 M PHOSPHATE CITRATE BUFFER, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.52850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.48850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.52850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.48850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.86250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.52850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.48850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.86250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.52850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.48850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 84 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 PRO B 351 REMARK 465 SER B 352 REMARK 465 SER B 353 REMARK 465 PRO B 354 REMARK 465 THR B 355 REMARK 465 SER B 356 REMARK 465 PRO B 357 REMARK 465 MET B 358 REMARK 465 PRO B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 85 OD1 ASP A 87 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 549 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -64.96 -90.25 REMARK 500 VAL A 38 -69.16 -102.27 REMARK 500 LYS A 98 -52.73 -132.58 REMARK 500 LYS A 164 -6.74 80.66 REMARK 500 PHE B 398 -19.22 74.64 REMARK 500 SER B 444 155.77 72.40 REMARK 500 SER B 447 115.32 73.35 REMARK 500 GLN B 503 -1.03 72.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 THR A 37 OG1 81.9 REMARK 620 3 GDP A 181 O1B 87.7 168.4 REMARK 620 4 HOH A 235 O 84.0 92.0 92.1 REMARK 620 5 HOH A 236 O 86.8 84.4 89.8 170.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MGF A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 181 O2B REMARK 620 2 MGF A 402 F1 96.3 REMARK 620 3 MGF A 402 F2 88.7 118.0 REMARK 620 4 MGF A 402 F3 88.5 112.6 129.2 REMARK 620 5 HOH A 237 O 169.1 94.2 83.9 90.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGF A 402 DBREF 3MSX A 1 180 UNP P61586 RHOA_HUMAN 1 180 DBREF 3MSX B 351 551 UNP Q9P2F6 RHG20_HUMAN 351 551 SEQADV 3MSX ASN A 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 A 180 MET ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP SEQRES 2 A 180 GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER SEQRES 3 A 180 LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE SEQRES 4 A 180 GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN SEQRES 5 A 180 VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 A 180 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP SEQRES 7 A 180 VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER SEQRES 8 A 180 LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS SEQRES 9 A 180 HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN SEQRES 10 A 180 LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU SEQRES 11 A 180 LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU SEQRES 12 A 180 GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR SEQRES 13 A 180 MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU SEQRES 14 A 180 VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN SEQRES 1 B 201 PRO SER SER PRO THR SER PRO MET PRO GLY GLN LEU PHE SEQRES 2 B 201 GLY ILE SER LEU PRO ASN ILE CYS GLU ASN ASP ASN LEU SEQRES 3 B 201 PRO LYS PRO VAL LEU ASP MET LEU PHE PHE LEU ASN GLN SEQRES 4 B 201 LYS GLY PRO LEU THR LYS GLY ILE PHE ARG GLN SER ALA SEQRES 5 B 201 ASN VAL LYS SER CYS ARG GLU LEU LYS GLU LYS LEU ASN SEQRES 6 B 201 SER GLY VAL GLU VAL HIS LEU ASP CYS GLU SER ILE PHE SEQRES 7 B 201 VAL ILE ALA SER VAL LEU LYS ASP PHE LEU ARG ASN ILE SEQRES 8 B 201 PRO GLY SER ILE PHE SER SER ASP LEU TYR ASP HIS TRP SEQRES 9 B 201 VAL SER VAL MET ASP GLN GLY ASN ASP GLU GLU LYS ILE SEQRES 10 B 201 ASN THR VAL GLN ARG LEU LEU ASP GLN LEU PRO ARG ALA SEQRES 11 B 201 ASN VAL VAL LEU LEU ARG TYR LEU PHE GLY VAL LEU HIS SEQRES 12 B 201 ASN ILE GLU GLN HIS SER SER SER ASN GLN MET THR ALA SEQRES 13 B 201 PHE ASN LEU ALA VAL CYS VAL ALA PRO SER ILE LEU TRP SEQRES 14 B 201 PRO PRO ALA SER SER SER PRO GLU LEU GLU ASN GLU PHE SEQRES 15 B 201 THR LYS LYS VAL SER LEU LEU ILE GLN PHE LEU ILE GLU SEQRES 16 B 201 ASN CYS LEU ARG ILE PHE HET GDP A 181 28 HET MG A 401 1 HET MGF A 402 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MGF TRIFLUOROMAGNESATE FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG MG 2+ FORMUL 5 MGF F3 MG 1- FORMUL 6 HOH *222(H2 O) HELIX 1 1 GLY A 17 ASP A 28 1 12 HELIX 2 2 GLN A 63 ASP A 67 5 5 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 LYS A 98 1 11 HELIX 5 5 LYS A 98 CYS A 107 1 10 HELIX 6 6 LYS A 118 ARG A 122 5 5 HELIX 7 7 ASP A 124 MET A 134 1 11 HELIX 8 8 LYS A 140 GLY A 152 1 13 HELIX 9 9 GLY A 166 GLN A 180 1 15 HELIX 10 10 SER B 366 CYS B 371 1 6 HELIX 11 11 GLU B 372 ASN B 375 5 4 HELIX 12 12 PRO B 377 GLY B 391 1 15 HELIX 13 13 PRO B 392 THR B 394 5 3 HELIX 14 14 ASN B 403 SER B 416 1 14 HELIX 15 15 SER B 426 ASN B 440 1 15 HELIX 16 16 SER B 447 ASP B 449 5 3 HELIX 17 17 LEU B 450 VAL B 457 1 8 HELIX 18 18 MET B 458 GLN B 460 5 3 HELIX 19 19 ASN B 462 ASP B 475 1 14 HELIX 20 20 PRO B 478 GLN B 497 1 20 HELIX 21 21 HIS B 498 GLN B 503 1 6 HELIX 22 22 THR B 505 LEU B 518 1 14 HELIX 23 23 SER B 525 PHE B 551 1 27 SHEET 1 A 6 PHE A 39 VAL A 48 0 SHEET 2 A 6 LYS A 51 THR A 60 -1 O ASP A 59 N GLU A 40 SHEET 3 A 6 ARG A 5 GLY A 12 1 N LEU A 8 O ALA A 56 SHEET 4 A 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 A 6 ILE A 112 ASN A 117 1 O ASN A 117 N PHE A 84 SHEET 6 A 6 GLY A 155 GLU A 158 1 O GLY A 155 N LEU A 114 LINK OG1 THR A 19 MG MG A 401 1555 1555 2.10 LINK OG1 THR A 37 MG MG A 401 1555 1555 2.10 LINK O1B GDP A 181 MG MG A 401 1555 1555 2.08 LINK O2B GDP A 181 MG MGF A 402 1555 1555 2.10 LINK O HOH A 235 MG MG A 401 1555 1555 2.17 LINK O HOH A 236 MG MG A 401 1555 1555 2.19 LINK O HOH A 237 MG MGF A 402 1555 1555 2.11 SITE 1 AC1 26 ALA A 15 CYS A 16 GLY A 17 LYS A 18 SITE 2 AC1 26 THR A 19 CYS A 20 PHE A 30 TYR A 34 SITE 3 AC1 26 LYS A 118 ASP A 120 LEU A 121 SER A 160 SITE 4 AC1 26 ALA A 161 LYS A 162 HOH A 205 HOH A 208 SITE 5 AC1 26 HOH A 213 HOH A 220 HOH A 235 HOH A 236 SITE 6 AC1 26 HOH A 252 HOH A 253 HOH A 301 MG A 401 SITE 7 AC1 26 MGF A 402 ARG B 399 SITE 1 AC2 6 THR A 19 THR A 37 GDP A 181 HOH A 235 SITE 2 AC2 6 HOH A 236 MGF A 402 SITE 1 AC3 13 GLY A 14 ALA A 15 LYS A 18 PRO A 36 SITE 2 AC3 13 THR A 37 GLY A 62 GLN A 63 GDP A 181 SITE 3 AC3 13 HOH A 235 HOH A 236 HOH A 237 MG A 401 SITE 4 AC3 13 ARG B 399 CRYST1 69.057 88.977 137.725 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007261 0.00000