PDB Short entry for 3MTC HEADER HYDROLASE/HYDROLASE INHIBITOR 30-APR-10 3MTC TITLE CRYSTAL STRUCTURE OF INPP5B IN COMPLEX WITH PHOSPHATIDYLINOSITOL 4- TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 339-643; COMPND 5 SYNONYM: PHOSPHOINOSITIDE 5-PHOSPHATASE, 5PTASE, 75 KDA INOSITOL COMPND 6 POLYPHOSPHATE-5-PHOSPHATASE; COMPND 7 EC: 3.1.3.36; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPP5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2 KEYWDS INPP5BA, PHOSPHOINOSITIDE 5-PHOSPHATASE, INOSITOL SIGNALLING, KEYWDS 2 PHOSPHATASE, MAGNESIUM, STRUCTURAL GENOMICS, SGC, SGC STOCKHOLM, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.WELIN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 T.KARLBERG,S.KOL,T.KOTENYOVA,M.MOCHE,T.NYMAN,C.PERSSON,H.SCHULER, AUTHOR 4 P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL,S.VAN DER BERG,E.WAHLBERG, AUTHOR 5 J.WEIGELT,M.WISNIEWSKA,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 6 (SGC) REVDAT 3 06-SEP-23 3MTC 1 REMARK SEQADV HETSYN LINK REVDAT 2 28-MAY-14 3MTC 1 JRNL VERSN REMARK REVDAT 1 30-JUN-10 3MTC 0 JRNL AUTH L.TRESAUGUES,C.SILVANDER,S.FLODIN,M.WELIN,T.NYMAN, JRNL AUTH 2 S.GRASLUND,M.HAMMARSTROM,H.BERGLUND,P.NORDLUND JRNL TITL STRUCTURAL BASIS FOR PHOSPHOINOSITIDE SUBSTRATE RECOGNITION, JRNL TITL 2 CATALYSIS, AND MEMBRANE INTERACTIONS IN HUMAN INOSITOL JRNL TITL 3 POLYPHOSPHATE 5-PHOSPHATASES JRNL REF STRUCTURE V. 22 744 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24704254 JRNL DOI 10.1016/J.STR.2014.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2664 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1815 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3609 ; 1.278 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4423 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;34.448 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;13.877 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.662 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2922 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 549 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 631 ; 0.097 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2520 ; 1.281 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 1.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 2.881 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : SI(311) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 94.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.69800 REMARK 200 R SYM FOR SHELL (I) : 0.69800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% POLYACRYLIC ACID, 0.02M MAGNESIUM REMARK 280 CHLORIDE, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.88050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.88050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.88050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.88050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.88050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.88050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.88050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.88050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.88050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.88050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.88050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.88050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 133.76100 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -66.88050 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 66.88050 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 66.88050 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 66.88050 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 133.76100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 568 REMARK 465 HIS A 569 REMARK 465 HIS A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 335 CE NZ REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 288 64.90 -155.21 REMARK 500 VAL A 345 -108.32 54.17 REMARK 500 ARG A 376 -31.20 -138.23 REMARK 500 ARG A 376 -23.77 -142.09 REMARK 500 HIS A 390 -119.60 48.51 REMARK 500 HIS A 404 137.31 89.79 REMARK 500 ASN A 438 46.91 -76.64 REMARK 500 GLU A 454 -57.91 65.03 REMARK 500 PRO A 500 141.61 -39.47 REMARK 500 ASP A 512 113.05 -33.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 571 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 77 O REMARK 620 2 HOH A 78 O 92.0 REMARK 620 3 HOH A 79 O 167.0 100.9 REMARK 620 4 ASN A 275 OD1 77.5 80.9 103.1 REMARK 620 5 GLU A 303 OE1 82.4 174.2 84.6 96.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIF A 572 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 574 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 575 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N9V RELATED DB: PDB REMARK 900 RELATED ID: 3NR8 RELATED DB: PDB DBREF 3MTC A 259 563 UNP P32019 I5P2_HUMAN 339 643 SEQADV 3MTC MET A 258 UNP P32019 EXPRESSION TAG SEQADV 3MTC ALA A 564 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 565 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 566 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 567 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 568 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 569 UNP P32019 EXPRESSION TAG SEQADV 3MTC HIS A 570 UNP P32019 EXPRESSION TAG SEQRES 1 A 313 MET TYR THR TYR ILE GLN ASN PHE ARG PHE PHE ALA GLY SEQRES 2 A 313 THR TYR ASN VAL ASN GLY GLN SER PRO LYS GLU CYS LEU SEQRES 3 A 313 ARG LEU TRP LEU SER ASN GLY ILE GLN ALA PRO ASP VAL SEQRES 4 A 313 TYR CYS VAL GLY PHE GLN GLU LEU ASP LEU SER LYS GLU SEQRES 5 A 313 ALA PHE PHE PHE HIS ASP THR PRO LYS GLU GLU GLU TRP SEQRES 6 A 313 PHE LYS ALA VAL SER GLU GLY LEU HIS PRO ASP ALA LYS SEQRES 7 A 313 TYR ALA LYS VAL LYS LEU ILE ARG LEU VAL GLY ILE MET SEQRES 8 A 313 LEU LEU LEU TYR VAL LYS GLN GLU HIS ALA ALA TYR ILE SEQRES 9 A 313 SER GLU VAL GLU ALA GLU THR VAL GLY THR GLY ILE MET SEQRES 10 A 313 GLY ARG MET GLY ASN LYS GLY GLY VAL ALA ILE ARG PHE SEQRES 11 A 313 GLN PHE HIS ASN THR SER ILE CYS VAL VAL ASN SER HIS SEQRES 12 A 313 LEU ALA ALA HIS ILE GLU GLU TYR GLU ARG ARG ASN GLN SEQRES 13 A 313 ASP TYR LYS ASP ILE CYS SER ARG MET GLN PHE CYS GLN SEQRES 14 A 313 PRO ASP PRO SER LEU PRO PRO LEU THR ILE SER ASN HIS SEQRES 15 A 313 ASP VAL ILE LEU TRP LEU GLY ASP LEU ASN TYR ARG ILE SEQRES 16 A 313 GLU GLU LEU ASP VAL GLU LYS VAL LYS LYS LEU ILE GLU SEQRES 17 A 313 GLU LYS ASP PHE GLN MET LEU TYR ALA TYR ASP GLN LEU SEQRES 18 A 313 LYS ILE GLN VAL ALA ALA LYS THR VAL PHE GLU GLY PHE SEQRES 19 A 313 THR GLU GLY GLU LEU THR PHE GLN PRO THR TYR LYS TYR SEQRES 20 A 313 ASP THR GLY SER ASP ASP TRP ASP THR SER GLU LYS CYS SEQRES 21 A 313 ARG ALA PRO ALA TRP CYS ASP ARG ILE LEU TRP LYS GLY SEQRES 22 A 313 LYS ASN ILE THR GLN LEU SER TYR GLN SER HIS MET ALA SEQRES 23 A 313 LEU LYS THR SER ASP HIS LYS PRO VAL SER SER VAL PHE SEQRES 24 A 313 ASP ILE GLY VAL ARG VAL VAL ALA HIS HIS HIS HIS HIS SEQRES 25 A 313 HIS HET GOL A 1 6 HET MG A 571 1 HET PIF A 572 43 HET SO4 A 573 5 HET GOL A 574 6 HET CL A 575 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PIF (2R)-3-{[(S)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6- HETNAM 2 PIF TETRAHYDROXY-4-(PHOSPHONOOXY) HETNAM 3 PIF CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL HETNAM 4 PIF DIOCTANOATE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PIF L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE; D(+)SN1, HETSYN 2 PIF 2DI-O-OCTANOYLGLYCERYL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 MG MG 2+ FORMUL 4 PIF C25 H48 O16 P2 FORMUL 5 SO4 O4 S 2- FORMUL 7 CL CL 1- FORMUL 8 HOH *225(H2 O) HELIX 1 1 LEU A 283 SER A 288 1 6 HELIX 2 2 SER A 307 PHE A 312 1 6 HELIX 3 3 PRO A 317 LEU A 330 1 14 HELIX 4 4 GLU A 356 ALA A 359 5 4 HELIX 5 5 GLY A 372 ARG A 376 5 5 HELIX 6 6 HIS A 404 GLU A 406 5 3 HELIX 7 7 GLU A 407 MET A 422 1 16 HELIX 8 8 ASP A 456 GLU A 466 1 11 HELIX 9 9 ASP A 468 ALA A 474 1 7 HELIX 10 10 ASP A 476 ALA A 484 1 9 SHEET 1 A 6 TYR A 336 LEU A 344 0 SHEET 2 A 6 ILE A 347 LYS A 354 -1 O VAL A 353 N ALA A 337 SHEET 3 A 6 VAL A 296 GLN A 302 -1 N PHE A 301 O MET A 348 SHEET 4 A 6 THR A 260 ASN A 273 1 N PHE A 268 O VAL A 296 SHEET 5 A 6 VAL A 552 VAL A 563 -1 O VAL A 562 N TYR A 261 SHEET 6 A 6 ILE A 533 SER A 540 -1 N LEU A 536 O VAL A 555 SHEET 1 B 5 ILE A 361 GLY A 370 0 SHEET 2 B 5 GLY A 381 PHE A 389 -1 O ARG A 386 N GLU A 365 SHEET 3 B 5 THR A 392 HIS A 400 -1 O HIS A 400 N GLY A 381 SHEET 4 B 5 VAL A 441 ASP A 447 1 O LEU A 445 N VAL A 397 SHEET 5 B 5 ASP A 524 GLY A 530 -1 O LEU A 527 N TRP A 444 LINK O HOH A 77 MG MG A 571 1555 1555 2.42 LINK O HOH A 78 MG MG A 571 1555 1555 2.29 LINK O HOH A 79 MG MG A 571 1555 1555 2.23 LINK OD1 ASN A 275 MG MG A 571 1555 1555 2.52 LINK OE1 GLU A 303 MG MG A 571 1555 1555 2.49 CISPEP 1 TYR A 502 LYS A 503 0 2.19 SITE 1 AC1 8 HOH A 41 HOH A 109 ILE A 262 GLN A 263 SITE 2 AC1 8 HIS A 357 TYR A 360 HIS A 390 ASN A 532 SITE 1 AC2 6 HOH A 77 HOH A 78 HOH A 79 ASN A 275 SITE 2 AC2 6 GLU A 303 PIF A 572 SITE 1 AC3 19 HOH A 70 HOH A 73 HOH A 74 HOH A 75 SITE 2 AC3 19 HOH A 76 HOH A 78 HOH A 87 HOH A 174 SITE 3 AC3 19 GLU A 303 LEU A 306 ASN A 379 LYS A 380 SITE 4 AC3 19 HIS A 400 HIS A 404 TYR A 502 LYS A 503 SITE 5 AC3 19 LYS A 516 ARG A 518 MG A 571 SITE 1 AC4 6 HOH A 93 HOH A 94 HOH A 191 SER A 307 SITE 2 AC4 6 LYS A 308 ARG A 376 SITE 1 AC5 5 HOH A 192 GLY A 372 ILE A 373 MET A 374 SITE 2 AC5 5 ARG A 410 SITE 1 AC6 2 HIS A 541 ALA A 543 CRYST1 133.761 133.761 133.761 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007476 0.00000