PDB Short entry for 3MTR HEADER CELL ADHESION 30-APR-10 3MTR TITLE CRYSTAL STRUCTURE OF THE IG5-FN1 TANDEM OF HUMAN NCAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IG5-FN1 TANDEM (UNP RESIDUES 414 TO 611); COMPND 5 SYNONYM: N-CAM-1, NCAM-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM1, NCAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS NCAM, IMMUNOGLOBULIN DOMAIN, FIBRONECTIN TYPE III REPEAT, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.LAVIE,D.A.FOLEY REVDAT 3 06-SEP-23 3MTR 1 REMARK SEQADV REVDAT 2 08-SEP-10 3MTR 1 JRNL REVDAT 1 23-JUN-10 3MTR 0 JRNL AUTH D.A.FOLEY,K.G.SWARTZENTRUBER,A.LAVIE,K.J.COLLEY JRNL TITL STRUCTURE AND MUTAGENESIS OF NEURAL CELL ADHESION MOLECULE JRNL TITL 2 DOMAINS: EVIDENCE FOR FLEXIBILITY IN THE PLACEMENT OF JRNL TITL 3 POLYSIALIC ACID ATTACHMENT SITES JRNL REF J.BIOL.CHEM. V. 285 27360 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20573953 JRNL DOI 10.1074/JBC.M110.140038 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 35851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2681 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3104 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4249 ; 1.567 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 6.684 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;35.501 ;25.338 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;12.724 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2398 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1280 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2159 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 310 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2011 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3178 ; 1.530 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 2.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 3.980 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT AND REMARK 200 ARP REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.92000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.92000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.87500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.92000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.87500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.92000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 387 REMARK 465 THR A 388 REMARK 465 TYR A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 ALA A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 ALA A 395 REMARK 465 LEU A 396 REMARK 465 VAL A 397 REMARK 465 PRO A 398 REMARK 465 ARG A 399 REMARK 465 GLY A 400 REMARK 465 VAL A 598 REMARK 465 GLN A 599 REMARK 465 GLY A 600 REMARK 465 GLU A 601 REMARK 465 ALA B 387 REMARK 465 THR B 388 REMARK 465 TYR B 389 REMARK 465 ALA B 390 REMARK 465 ALA B 391 REMARK 465 ALA B 392 REMARK 465 SER B 393 REMARK 465 SER B 394 REMARK 465 ALA B 395 REMARK 465 LEU B 396 REMARK 465 VAL B 397 REMARK 465 PRO B 398 REMARK 465 ARG B 399 REMARK 465 GLY B 400 REMARK 465 SER B 401 REMARK 465 HIS B 402 REMARK 465 GLY B 600 REMARK 465 GLU B 601 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 401 OG REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 GLU A 465 CG CD OE1 OE2 REMARK 470 GLU A 491 CG CD OE1 OE2 REMARK 470 GLU A 542 CG CD OE1 OE2 REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 GLU A 569 CG CD OE1 OE2 REMARK 470 TYR B 456 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 469 CG OD1 OD2 REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 ASN B 472 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 143 O HOH B 321 1.91 REMARK 500 O HOH B 245 O HOH B 277 1.96 REMARK 500 OH TYR B 450 O HOH B 256 2.05 REMARK 500 O HOH B 162 O HOH B 247 2.18 REMARK 500 CG GLU A 558 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 42 O HOH B 295 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 479 CB CYS B 479 SG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 512 98.73 16.40 REMARK 500 SER A 513 -7.35 86.34 REMARK 500 ASP B 441 55.04 35.45 REMARK 500 TYR B 511 -139.97 -106.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 DBREF 3MTR A 404 601 UNP P13591 NCAM1_HUMAN 414 611 DBREF 3MTR B 404 601 UNP P13591 NCAM1_HUMAN 414 611 SEQADV 3MTR ALA A 387 UNP P13591 EXPRESSION TAG SEQADV 3MTR THR A 388 UNP P13591 EXPRESSION TAG SEQADV 3MTR TYR A 389 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA A 390 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA A 391 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA A 392 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER A 393 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER A 394 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA A 395 UNP P13591 EXPRESSION TAG SEQADV 3MTR LEU A 396 UNP P13591 EXPRESSION TAG SEQADV 3MTR VAL A 397 UNP P13591 EXPRESSION TAG SEQADV 3MTR PRO A 398 UNP P13591 EXPRESSION TAG SEQADV 3MTR ARG A 399 UNP P13591 EXPRESSION TAG SEQADV 3MTR GLY A 400 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER A 401 UNP P13591 EXPRESSION TAG SEQADV 3MTR HIS A 402 UNP P13591 EXPRESSION TAG SEQADV 3MTR MET A 403 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA B 387 UNP P13591 EXPRESSION TAG SEQADV 3MTR THR B 388 UNP P13591 EXPRESSION TAG SEQADV 3MTR TYR B 389 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA B 390 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA B 391 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA B 392 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER B 393 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER B 394 UNP P13591 EXPRESSION TAG SEQADV 3MTR ALA B 395 UNP P13591 EXPRESSION TAG SEQADV 3MTR LEU B 396 UNP P13591 EXPRESSION TAG SEQADV 3MTR VAL B 397 UNP P13591 EXPRESSION TAG SEQADV 3MTR PRO B 398 UNP P13591 EXPRESSION TAG SEQADV 3MTR ARG B 399 UNP P13591 EXPRESSION TAG SEQADV 3MTR GLY B 400 UNP P13591 EXPRESSION TAG SEQADV 3MTR SER B 401 UNP P13591 EXPRESSION TAG SEQADV 3MTR HIS B 402 UNP P13591 EXPRESSION TAG SEQADV 3MTR MET B 403 UNP P13591 EXPRESSION TAG SEQRES 1 A 215 ALA THR TYR ALA ALA ALA SER SER ALA LEU VAL PRO ARG SEQRES 2 A 215 GLY SER HIS MET TYR ALA PRO LYS LEU GLN GLY PRO VAL SEQRES 3 A 215 ALA VAL TYR THR TRP GLU GLY ASN GLN VAL ASN ILE THR SEQRES 4 A 215 CYS GLU VAL PHE ALA TYR PRO SER ALA THR ILE SER TRP SEQRES 5 A 215 PHE ARG ASP GLY GLN LEU LEU PRO SER SER ASN TYR SER SEQRES 6 A 215 ASN ILE LYS ILE TYR ASN THR PRO SER ALA SER TYR LEU SEQRES 7 A 215 GLU VAL THR PRO ASP SER GLU ASN ASP PHE GLY ASN TYR SEQRES 8 A 215 ASN CYS THR ALA VAL ASN ARG ILE GLY GLN GLU SER LEU SEQRES 9 A 215 GLU PHE ILE LEU VAL GLN ALA ASP THR PRO SER SER PRO SEQRES 10 A 215 SER ILE ASP GLN VAL GLU PRO TYR SER SER THR ALA GLN SEQRES 11 A 215 VAL GLN PHE ASP GLU PRO GLU ALA THR GLY GLY VAL PRO SEQRES 12 A 215 ILE LEU LYS TYR LYS ALA GLU TRP ARG ALA VAL GLY GLU SEQRES 13 A 215 GLU VAL TRP HIS SER LYS TRP TYR ASP ALA LYS GLU ALA SEQRES 14 A 215 SER MET GLU GLY ILE VAL THR ILE VAL GLY LEU LYS PRO SEQRES 15 A 215 GLU THR THR TYR ALA VAL ARG LEU ALA ALA LEU ASN GLY SEQRES 16 A 215 LYS GLY LEU GLY GLU ILE SER ALA ALA SER GLU PHE LYS SEQRES 17 A 215 THR GLN PRO VAL GLN GLY GLU SEQRES 1 B 215 ALA THR TYR ALA ALA ALA SER SER ALA LEU VAL PRO ARG SEQRES 2 B 215 GLY SER HIS MET TYR ALA PRO LYS LEU GLN GLY PRO VAL SEQRES 3 B 215 ALA VAL TYR THR TRP GLU GLY ASN GLN VAL ASN ILE THR SEQRES 4 B 215 CYS GLU VAL PHE ALA TYR PRO SER ALA THR ILE SER TRP SEQRES 5 B 215 PHE ARG ASP GLY GLN LEU LEU PRO SER SER ASN TYR SER SEQRES 6 B 215 ASN ILE LYS ILE TYR ASN THR PRO SER ALA SER TYR LEU SEQRES 7 B 215 GLU VAL THR PRO ASP SER GLU ASN ASP PHE GLY ASN TYR SEQRES 8 B 215 ASN CYS THR ALA VAL ASN ARG ILE GLY GLN GLU SER LEU SEQRES 9 B 215 GLU PHE ILE LEU VAL GLN ALA ASP THR PRO SER SER PRO SEQRES 10 B 215 SER ILE ASP GLN VAL GLU PRO TYR SER SER THR ALA GLN SEQRES 11 B 215 VAL GLN PHE ASP GLU PRO GLU ALA THR GLY GLY VAL PRO SEQRES 12 B 215 ILE LEU LYS TYR LYS ALA GLU TRP ARG ALA VAL GLY GLU SEQRES 13 B 215 GLU VAL TRP HIS SER LYS TRP TYR ASP ALA LYS GLU ALA SEQRES 14 B 215 SER MET GLU GLY ILE VAL THR ILE VAL GLY LEU LYS PRO SEQRES 15 B 215 GLU THR THR TYR ALA VAL ARG LEU ALA ALA LEU ASN GLY SEQRES 16 B 215 LYS GLY LEU GLY GLU ILE SER ALA ALA SER GLU PHE LYS SEQRES 17 B 215 THR GLN PRO VAL GLN GLY GLU HET SO4 B 1 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *340(H2 O) HELIX 1 1 SER A 470 PHE A 474 5 5 HELIX 2 2 ALA A 552 GLY A 559 1 8 HELIX 3 3 SER B 470 PHE B 474 5 5 HELIX 4 4 ALA B 552 GLY B 559 1 8 SHEET 1 A 4 TYR A 404 GLN A 409 0 SHEET 2 A 4 VAL A 422 TYR A 431 -1 O PHE A 429 N LYS A 407 SHEET 3 A 4 ALA A 461 VAL A 466 -1 O SER A 462 N CYS A 426 SHEET 4 A 4 ILE A 453 THR A 458 -1 N LYS A 454 O GLU A 465 SHEET 1 B 5 ALA A 413 THR A 416 0 SHEET 2 B 5 GLN A 487 GLN A 496 1 O VAL A 495 N VAL A 414 SHEET 3 B 5 GLY A 475 VAL A 482 -1 N GLY A 475 O LEU A 494 SHEET 4 B 5 THR A 435 ARG A 440 -1 N SER A 437 O THR A 480 SHEET 5 B 5 GLN A 443 LEU A 444 -1 O GLN A 443 N ARG A 440 SHEET 1 C 3 SER A 504 TYR A 511 0 SHEET 2 C 3 THR A 514 ASP A 520 -1 O THR A 514 N TYR A 511 SHEET 3 C 3 ILE A 560 VAL A 564 -1 O VAL A 561 N VAL A 517 SHEET 1 D 4 HIS A 546 ASP A 551 0 SHEET 2 D 4 ILE A 530 ALA A 539 -1 N TRP A 537 O HIS A 546 SHEET 3 D 4 THR A 571 ASN A 580 -1 O LEU A 579 N LEU A 531 SHEET 4 D 4 SER A 591 LYS A 594 -1 O SER A 591 N VAL A 574 SHEET 1 E 4 TYR B 404 GLN B 409 0 SHEET 2 E 4 VAL B 422 TYR B 431 -1 O GLU B 427 N GLN B 409 SHEET 3 E 4 ALA B 461 VAL B 466 -1 O LEU B 464 N ILE B 424 SHEET 4 E 4 ILE B 453 ASN B 457 -1 N LYS B 454 O GLU B 465 SHEET 1 F 5 ALA B 413 THR B 416 0 SHEET 2 F 5 GLN B 487 GLN B 496 1 O VAL B 495 N VAL B 414 SHEET 3 F 5 GLY B 475 VAL B 482 -1 N TYR B 477 O PHE B 492 SHEET 4 F 5 THR B 435 ARG B 440 -1 N SER B 437 O THR B 480 SHEET 5 F 5 GLN B 443 LEU B 445 -1 O GLN B 443 N ARG B 440 SHEET 1 G 3 SER B 504 PRO B 510 0 SHEET 2 G 3 THR B 514 ASP B 520 -1 O ASP B 520 N SER B 504 SHEET 3 G 3 ILE B 560 VAL B 564 -1 O VAL B 561 N VAL B 517 SHEET 1 H 4 HIS B 546 ASP B 551 0 SHEET 2 H 4 ILE B 530 ALA B 539 -1 N TRP B 537 O HIS B 546 SHEET 3 H 4 THR B 571 ASN B 580 -1 O LEU B 579 N LYS B 532 SHEET 4 H 4 GLY B 583 LEU B 584 -1 O GLY B 583 N ASN B 580 SHEET 1 I 4 HIS B 546 ASP B 551 0 SHEET 2 I 4 ILE B 530 ALA B 539 -1 N TRP B 537 O HIS B 546 SHEET 3 I 4 THR B 571 ASN B 580 -1 O LEU B 579 N LYS B 532 SHEET 4 I 4 SER B 591 LYS B 594 -1 O PHE B 593 N TYR B 572 SSBOND 1 CYS A 426 CYS A 479 1555 1555 2.03 SSBOND 2 CYS B 426 CYS B 479 1555 1555 2.03 CISPEP 1 TYR A 431 PRO A 432 0 0.23 CISPEP 2 LEU A 445 PRO A 446 0 -3.78 CISPEP 3 TYR B 431 PRO B 432 0 -0.46 CISPEP 4 LEU B 445 PRO B 446 0 -1.67 SITE 1 AC1 4 TYR B 511 SER B 512 SER B 513 THR B 514 CRYST1 77.090 155.840 71.750 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013937 0.00000