PDB Short entry for 3MUP HEADER APOPTOSIS INHIBITOR 03-MAY-10 3MUP TITLE CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC037 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: REPEAT 3 (BIR3) DOMAIN, UNP RESIDUES 251-363; COMPND 5 SYNONYM: INHIBITOR OF APOPTOSIS PROTEINS 1 (CIAP1), INHIBITOR OF COMPND 6 APOPTOSIS PROTEIN 2, IAP-2, HIAP-2, HIAP2, C-IAP1, TNFR2-TRAF- COMPND 7 SIGNALING COMPLEX PROTEIN 2, IAP HOMOLOG B, RING FINGER PROTEIN 48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: API1, BIRC2, IAP2, MIHB, RNF48; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS ZINC-FINGER MOTIF, APOPTOSIS INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.COSSU,F.MALVEZZI,G.CANEVARI,M.MILANI REVDAT 3 01-NOV-23 3MUP 1 REMARK SEQADV LINK REVDAT 2 19-FEB-14 3MUP 1 JRNL VERSN REMARK REVDAT 1 24-NOV-10 3MUP 0 JRNL AUTH F.COSSU,F.MALVEZZI,G.CANEVARI,E.MASTRANGELO,D.LECIS,D.DELIA, JRNL AUTH 2 P.SENECI,C.SCOLASTICO,M.BOLOGNESI,M.MILANI JRNL TITL RECOGNITION OF SMAC-MIMETIC COMPOUNDS BY THE BIR DOMAIN OF JRNL TITL 2 CIAP1 JRNL REF PROTEIN SCI. V. 19 2418 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20954235 JRNL DOI 10.1002/PRO.523 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 15907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 798 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2961 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.46240 REMARK 3 B22 (A**2) : -2.21370 REMARK 3 B33 (A**2) : 6.67600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.98300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.421 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 RESIDUE RANGE : A 254 A 354 REMARK 3 RESIDUE RANGE : A 600 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0098 -2.9473 10.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: -0.1907 REMARK 3 T33: -0.1470 T12: 0.0023 REMARK 3 T13: -0.0441 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 1.9664 L22: 5.5494 REMARK 3 L33: 4.8575 L12: -0.6611 REMARK 3 L13: 0.6953 L23: 0.9381 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0147 S13: 0.0412 REMARK 3 S21: -0.0662 S22: 0.0738 S23: 0.0727 REMARK 3 S31: -0.0446 S32: 0.0747 S33: -0.0832 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 2 REMARK 3 RESIDUE RANGE : B 255 B 354 REMARK 3 RESIDUE RANGE : B 600 B 600 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3284 -11.3943 38.0576 REMARK 3 T TENSOR REMARK 3 T11: -0.0312 T22: -0.1421 REMARK 3 T33: -0.1361 T12: 0.0047 REMARK 3 T13: -0.0198 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 1.5983 L22: 3.5142 REMARK 3 L33: 5.9473 L12: 0.5938 REMARK 3 L13: 0.7672 L23: -0.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0800 S13: 0.0125 REMARK 3 S21: 0.1181 S22: 0.0834 S23: -0.0985 REMARK 3 S31: -0.1991 S32: 0.1437 S33: -0.0865 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 3 REMARK 3 RESIDUE RANGE : C 254 C 356 REMARK 3 RESIDUE RANGE : C 600 C 600 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8760 -34.3506 14.6506 REMARK 3 T TENSOR REMARK 3 T11: -0.0630 T22: -0.1129 REMARK 3 T33: -0.1021 T12: -0.0545 REMARK 3 T13: -0.0929 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 2.8886 L22: 4.9316 REMARK 3 L33: 3.2385 L12: -0.5852 REMARK 3 L13: 2.1225 L23: 0.5522 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: -0.1370 S13: -0.1629 REMARK 3 S21: 0.1742 S22: -0.0330 S23: -0.0283 REMARK 3 S31: 0.0894 S32: -0.0859 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 4 REMARK 3 RESIDUE RANGE : D 254 D 355 REMARK 3 RESIDUE RANGE : D 600 D 600 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2922 -43.1215 34.8782 REMARK 3 T TENSOR REMARK 3 T11: -0.0339 T22: -0.1514 REMARK 3 T33: -0.0971 T12: 0.0592 REMARK 3 T13: -0.0554 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.8960 L22: 4.3306 REMARK 3 L33: 3.4596 L12: 0.2773 REMARK 3 L13: 1.5968 L23: -1.2243 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: 0.0525 S13: -0.0603 REMARK 3 S21: -0.1403 S22: -0.0064 S23: 0.0946 REMARK 3 S31: 0.2326 S32: 0.0609 S33: -0.1034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 53.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3D9U, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M HEPES PH 7.5, 0.2M REMARK 280 LITIUM SULPHATE; DROP VOLUME: 0.3UL; PROTEIN PROPORTION: 67%; REMARK 280 PROTEIN CONCENTRATION: 10 MG/ML, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 SER A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 THR A 250 REMARK 465 LEU A 251 REMARK 465 ARG A 252 REMARK 465 PHE A 253 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 GLU A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 MET B 244 REMARK 465 GLU B 245 REMARK 465 ASN B 246 REMARK 465 SER B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 THR B 250 REMARK 465 LEU B 251 REMARK 465 ARG B 252 REMARK 465 PHE B 253 REMARK 465 SER B 254 REMARK 465 SER B 355 REMARK 465 THR B 356 REMARK 465 SER B 357 REMARK 465 LEU B 358 REMARK 465 GLU B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 MET C 244 REMARK 465 GLU C 245 REMARK 465 ASN C 246 REMARK 465 SER C 247 REMARK 465 LEU C 248 REMARK 465 GLU C 249 REMARK 465 THR C 250 REMARK 465 LEU C 251 REMARK 465 ARG C 252 REMARK 465 PHE C 253 REMARK 465 SER C 357 REMARK 465 LEU C 358 REMARK 465 GLU C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 465 HIS C 365 REMARK 465 MET D 244 REMARK 465 GLU D 245 REMARK 465 ASN D 246 REMARK 465 SER D 247 REMARK 465 LEU D 248 REMARK 465 GLU D 249 REMARK 465 THR D 250 REMARK 465 LEU D 251 REMARK 465 ARG D 252 REMARK 465 PHE D 253 REMARK 465 THR D 356 REMARK 465 SER D 357 REMARK 465 LEU D 358 REMARK 465 GLU D 359 REMARK 465 HIS D 360 REMARK 465 HIS D 361 REMARK 465 HIS D 362 REMARK 465 HIS D 363 REMARK 465 HIS D 364 REMARK 465 HIS D 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 295 -132.78 44.67 REMARK 500 CYS A 302 -66.73 -94.21 REMARK 500 TYR B 272 41.48 -104.09 REMARK 500 ASN B 295 -129.04 47.13 REMARK 500 CYS B 302 -66.11 -94.62 REMARK 500 TYR C 272 40.64 -102.94 REMARK 500 ASN C 295 -128.87 45.82 REMARK 500 CYS C 302 -66.13 -94.78 REMARK 500 TYR C 346 72.77 -117.96 REMARK 500 ASN D 295 -129.77 46.94 REMARK 500 CYS D 302 -66.76 -95.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 CYS A 303 SG 107.6 REMARK 620 3 HIS A 320 NE2 107.4 117.5 REMARK 620 4 CYS A 327 SG 112.2 103.4 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 300 SG REMARK 620 2 CYS B 303 SG 106.1 REMARK 620 3 HIS B 320 NE2 107.5 106.7 REMARK 620 4 CYS B 327 SG 116.3 111.0 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 300 SG REMARK 620 2 CYS C 303 SG 111.4 REMARK 620 3 HIS C 320 NE2 99.6 108.6 REMARK 620 4 CYS C 327 SG 116.8 110.0 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 300 SG REMARK 620 2 CYS D 303 SG 111.3 REMARK 620 3 HIS D 320 NE2 98.2 108.4 REMARK 620 4 CYS D 327 SG 114.7 110.7 112.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMK A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMK B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMK C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SMK D 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EYL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF XIAP BIR3 DOMAIN IN COMPLEX WITH A SMAC- REMARK 900 MIMETIC COMPOUND REMARK 900 RELATED ID: 3OZ1 RELATED DB: PDB REMARK 900 CIAP1-BIR3 DOMAIN IN COMPLEX WITH THE SMAC-MIMETIC COMPOUND SMAC066 DBREF 3MUP A 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3MUP B 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3MUP C 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 3MUP D 245 357 UNP Q13490 BIRC2_HUMAN 251 363 SEQADV 3MUP MET A 244 UNP Q13490 EXPRESSION TAG SEQADV 3MUP LEU A 358 UNP Q13490 EXPRESSION TAG SEQADV 3MUP GLU A 359 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 360 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 361 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 362 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 363 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 364 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS A 365 UNP Q13490 EXPRESSION TAG SEQADV 3MUP MET B 244 UNP Q13490 EXPRESSION TAG SEQADV 3MUP LEU B 358 UNP Q13490 EXPRESSION TAG SEQADV 3MUP GLU B 359 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 360 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 361 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 362 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 363 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 364 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS B 365 UNP Q13490 EXPRESSION TAG SEQADV 3MUP MET C 244 UNP Q13490 EXPRESSION TAG SEQADV 3MUP LEU C 358 UNP Q13490 EXPRESSION TAG SEQADV 3MUP GLU C 359 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 360 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 361 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 362 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 363 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 364 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS C 365 UNP Q13490 EXPRESSION TAG SEQADV 3MUP MET D 244 UNP Q13490 EXPRESSION TAG SEQADV 3MUP LEU D 358 UNP Q13490 EXPRESSION TAG SEQADV 3MUP GLU D 359 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 360 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 361 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 362 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 363 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 364 UNP Q13490 EXPRESSION TAG SEQADV 3MUP HIS D 365 UNP Q13490 EXPRESSION TAG SEQRES 1 A 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 A 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 A 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 A 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 A 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 A 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 A 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 A 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 A 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 B 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 B 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 B 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 B 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 B 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 B 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 B 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 B 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 B 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 C 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 C 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 C 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 C 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 C 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 C 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 C 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 C 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS SEQRES 1 D 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 D 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 D 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 D 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 D 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 D 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 D 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 D 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 D 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 D 122 HIS HIS HIS HIS HIS HET SMK A 600 37 HET ZN A 1 1 HET SMK B 600 37 HET ZN B 2 1 HET SMK C 600 37 HET ZN C 3 1 HET SMK D 600 37 HET ZN D 4 1 HETNAM SMK (3S,6S,7R,9AS)-6-{[(2S)-2-AMINOBUTANOYL]AMINO}-7-(2- HETNAM 2 SMK AMINOETHYL)-N-(DIPHENYLMETHYL)-5-OXOOCTAHYDRO-1H- HETNAM 3 SMK PYRROLO[1,2-A]AZEPINE-3-CARBOXAMIDE HETNAM ZN ZINC ION FORMUL 5 SMK 4(C29 H39 N5 O3) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *78(H2 O) HELIX 1 1 ASN A 257 GLN A 261 5 5 HELIX 2 2 THR A 262 THR A 269 1 8 HELIX 3 3 PHE A 270 TRP A 273 5 4 HELIX 4 4 GLN A 280 ALA A 287 1 8 HELIX 5 5 ASP A 315 PHE A 324 1 10 HELIX 6 6 CYS A 327 GLY A 335 1 9 HELIX 7 7 GLY A 335 TYR A 346 1 12 HELIX 8 8 HIS A 348 LEU A 354 1 7 HELIX 9 9 ASN B 257 GLN B 261 5 5 HELIX 10 10 THR B 262 THR B 269 1 8 HELIX 11 11 GLN B 280 ALA B 287 1 8 HELIX 12 12 ASP B 315 PHE B 324 1 10 HELIX 13 13 CYS B 327 TYR B 346 1 20 HELIX 14 14 HIS B 348 LEU B 354 1 7 HELIX 15 15 ASN C 257 GLN C 261 5 5 HELIX 16 16 THR C 262 PHE C 270 1 9 HELIX 17 17 GLN C 280 ALA C 287 1 8 HELIX 18 18 ASP C 315 PHE C 324 1 10 HELIX 19 19 CYS C 327 GLY C 335 1 9 HELIX 20 20 GLY C 335 TYR C 346 1 12 HELIX 21 21 HIS C 348 THR C 356 1 9 HELIX 22 22 ASN D 257 GLN D 261 5 5 HELIX 23 23 THR D 262 THR D 269 1 8 HELIX 24 24 PHE D 270 TRP D 273 5 4 HELIX 25 25 GLN D 280 ALA D 287 1 8 HELIX 26 26 ASP D 315 PHE D 324 1 10 HELIX 27 27 CYS D 327 GLY D 335 1 9 HELIX 28 28 GLY D 335 TYR D 346 1 12 HELIX 29 29 HIS D 348 SER D 355 1 8 SHEET 1 A 3 PHE A 289 TYR A 291 0 SHEET 2 A 3 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290 SHEET 3 A 3 GLY A 306 LEU A 307 -1 O LEU A 307 N VAL A 298 SHEET 1 B 3 PHE B 289 TYR B 291 0 SHEET 2 B 3 VAL B 298 CYS B 300 -1 O LYS B 299 N TYR B 290 SHEET 3 B 3 GLY B 306 LEU B 307 -1 O LEU B 307 N VAL B 298 SHEET 1 C 3 PHE C 289 TYR C 291 0 SHEET 2 C 3 VAL C 298 CYS C 300 -1 O LYS C 299 N TYR C 290 SHEET 3 C 3 GLY C 306 LEU C 307 -1 O LEU C 307 N VAL C 298 SHEET 1 D 3 PHE D 289 TYR D 291 0 SHEET 2 D 3 VAL D 298 CYS D 300 -1 O LYS D 299 N TYR D 290 SHEET 3 D 3 GLY D 306 LEU D 307 -1 O LEU D 307 N VAL D 298 LINK ZN ZN A 1 SG CYS A 300 1555 1555 2.42 LINK ZN ZN A 1 SG CYS A 303 1555 1555 2.41 LINK ZN ZN A 1 NE2 HIS A 320 1555 1555 2.08 LINK ZN ZN A 1 SG CYS A 327 1555 1555 2.39 LINK ZN ZN B 2 SG CYS B 300 1555 1555 2.39 LINK ZN ZN B 2 SG CYS B 303 1555 1555 2.42 LINK ZN ZN B 2 NE2 HIS B 320 1555 1555 2.22 LINK ZN ZN B 2 SG CYS B 327 1555 1555 2.19 LINK ZN ZN C 3 SG CYS C 300 1555 1555 2.32 LINK ZN ZN C 3 SG CYS C 303 1555 1555 2.32 LINK ZN ZN C 3 NE2 HIS C 320 1555 1555 2.29 LINK ZN ZN C 3 SG CYS C 327 1555 1555 2.29 LINK ZN ZN D 4 SG CYS D 300 1555 1555 2.44 LINK ZN ZN D 4 SG CYS D 303 1555 1555 2.31 LINK ZN ZN D 4 NE2 HIS D 320 1555 1555 2.19 LINK ZN ZN D 4 SG CYS D 327 1555 1555 2.25 SITE 1 AC1 11 HOH A 24 VAL A 298 LYS A 299 GLY A 306 SITE 2 AC1 11 LEU A 307 ARG A 308 CYS A 309 GLU A 311 SITE 3 AC1 11 ASP A 314 GLU A 319 TRP A 323 SITE 1 AC2 4 CYS A 300 CYS A 303 HIS A 320 CYS A 327 SITE 1 AC3 10 VAL B 298 GLY B 306 LEU B 307 ARG B 308 SITE 2 AC3 10 CYS B 309 GLU B 311 ASP B 314 GLU B 319 SITE 3 AC3 10 TRP B 323 LEU D 354 SITE 1 AC4 4 CYS B 300 CYS B 303 HIS B 320 CYS B 327 SITE 1 AC5 10 VAL C 298 GLY C 306 LEU C 307 ARG C 308 SITE 2 AC5 10 CYS C 309 GLU C 311 ASP C 314 GLU C 319 SITE 3 AC5 10 LYS C 322 TRP C 323 SITE 1 AC6 4 CYS C 300 CYS C 303 HIS C 320 CYS C 327 SITE 1 AC7 11 LEU B 354 ARG C 294 VAL D 298 GLY D 306 SITE 2 AC7 11 LEU D 307 ARG D 308 CYS D 309 GLU D 311 SITE 3 AC7 11 ASP D 314 GLU D 319 TRP D 323 SITE 1 AC8 4 CYS D 300 CYS D 303 HIS D 320 CYS D 327 CRYST1 71.630 79.790 98.410 90.00 92.48 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013961 0.000000 0.000605 0.00000 SCALE2 0.000000 0.012533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010171 0.00000