PDB Short entry for 3MZW HEADER TRANSFERASE 13-MAY-10 3MZW TITLE HER2 EXTRACELLUAR REGION WITH AFFINITY MATURED 3-HELIX AFFIBODY TITLE 2 ZHER2:342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN RESIDUES 23-646; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2, P185ERBB2, PROTO- COMPND 6 ONCOGENE C-ERBB-2, PROTO-ONCOGENE NEU, METASTATIC LYMPH NODE GENE 19 COMPND 7 PROTEIN, MLN 19; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: B 4 REPEAT DOMAIN RESIDUES 212-269; COMPND 14 SYNONYM: IGG-BINDING PROTEIN A, STAPHYLOCOCCAL PROTEIN A; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 12 ORGANISM_TAXID: 1280; SOURCE 13 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS PROTEIN-PROTEIN COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.EIGENBROT,M.H.ULTSCH REVDAT 5 06-SEP-23 3MZW 1 HETSYN REVDAT 4 29-JUL-20 3MZW 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-NOV-17 3MZW 1 REMARK REVDAT 2 08-SEP-10 3MZW 1 JRNL REVDAT 1 28-JUL-10 3MZW 0 JRNL AUTH C.EIGENBROT,M.ULTSCH,A.DUBNOVITSKY,L.ABRAHMSEN,T.HARD JRNL TITL STRUCTURAL BASIS FOR HIGH-AFFINITY HER2 RECEPTOR BINDING BY JRNL TITL 2 AN ENGINEERED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 15039 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20696930 JRNL DOI 10.1073/PNAS.1005025107 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 21673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 1.66000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.510 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.292 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.688 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5017 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6839 ; 1.359 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 6.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;38.717 ;24.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;19.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3842 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2024 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3337 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.034 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3169 ; 2.985 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5007 ; 4.858 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2032 ; 3.117 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1832 ; 4.903 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6346 -48.5186 15.2357 REMARK 3 T TENSOR REMARK 3 T11: -0.0993 T22: -0.0537 REMARK 3 T33: -0.0437 T12: 0.0210 REMARK 3 T13: 0.0734 T23: 0.1347 REMARK 3 L TENSOR REMARK 3 L11: 1.9739 L22: 2.2733 REMARK 3 L33: 1.9560 L12: -0.0115 REMARK 3 L13: 0.6057 L23: -0.9399 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.1416 S13: -0.2885 REMARK 3 S21: 0.1096 S22: -0.0895 S23: -0.0564 REMARK 3 S31: 0.0730 S32: -0.0497 S33: 0.0670 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 245 REMARK 3 RESIDUE RANGE : A 1237 A 1238 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5783 -69.5950 4.6834 REMARK 3 T TENSOR REMARK 3 T11: -0.0416 T22: -0.4192 REMARK 3 T33: 0.2986 T12: 0.1345 REMARK 3 T13: 0.0911 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 2.9957 L22: 4.9561 REMARK 3 L33: 10.0602 L12: 0.0006 REMARK 3 L13: -0.5708 L23: -1.8846 REMARK 3 S TENSOR REMARK 3 S11: -0.1256 S12: 0.2344 S13: -1.0219 REMARK 3 S21: -0.1080 S22: 0.1531 S23: 0.2333 REMARK 3 S31: 1.0009 S32: 0.0300 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4246 -69.5928 -22.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.4101 T22: -0.1287 REMARK 3 T33: 0.0574 T12: 0.2603 REMARK 3 T13: 0.0238 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 8.5280 L22: 0.2780 REMARK 3 L33: 0.1191 L12: -1.5396 REMARK 3 L13: -1.0079 L23: 0.1820 REMARK 3 S TENSOR REMARK 3 S11: -0.3866 S12: 0.0334 S13: -0.1495 REMARK 3 S21: -0.1006 S22: -0.0607 S23: 1.3639 REMARK 3 S31: -0.2590 S32: 0.2373 S33: 0.4473 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2807 -49.8210 -19.6984 REMARK 3 T TENSOR REMARK 3 T11: 0.0299 T22: -0.0913 REMARK 3 T33: 0.0162 T12: 0.1532 REMARK 3 T13: 0.2568 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 1.6094 L22: 8.4874 REMARK 3 L33: 6.7748 L12: -1.4074 REMARK 3 L13: 3.2973 L23: -3.2581 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.4585 S13: -0.6134 REMARK 3 S21: -0.8052 S22: -0.4286 S23: -1.0513 REMARK 3 S31: 0.3534 S32: 0.5548 S33: 0.4511 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0878 -26.8596 -12.5925 REMARK 3 T TENSOR REMARK 3 T11: -0.0993 T22: 0.0016 REMARK 3 T33: -0.1392 T12: -0.0367 REMARK 3 T13: 0.0181 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 2.4754 L22: 1.3251 REMARK 3 L33: 1.3379 L12: -0.3177 REMARK 3 L13: 0.0633 L23: -0.2510 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.2146 S13: -0.0428 REMARK 3 S21: -0.0500 S22: 0.0089 S23: 0.0223 REMARK 3 S31: 0.0402 S32: 0.0855 S33: 0.0959 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 578 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8514 -24.5677 -45.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0045 REMARK 3 T33: -0.2292 T12: -0.2771 REMARK 3 T13: -0.2059 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 4.6434 L22: 2.1027 REMARK 3 L33: 14.3687 L12: 0.8804 REMARK 3 L13: -2.2402 L23: -1.3311 REMARK 3 S TENSOR REMARK 3 S11: -0.2695 S12: 0.6450 S13: 0.1446 REMARK 3 S21: -0.3737 S22: 0.4679 S23: 0.2187 REMARK 3 S31: 0.5002 S32: -0.9193 S33: -0.1984 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0283 -7.2921 -22.0986 REMARK 3 T TENSOR REMARK 3 T11: -0.0231 T22: 0.1117 REMARK 3 T33: -0.0186 T12: -0.0512 REMARK 3 T13: -0.0383 T23: 0.2232 REMARK 3 L TENSOR REMARK 3 L11: 3.3811 L22: 6.0176 REMARK 3 L33: 1.2592 L12: -0.3319 REMARK 3 L13: -0.2836 L23: 1.1880 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.7029 S13: 0.5369 REMARK 3 S21: -0.4312 S22: -0.0613 S23: -0.2194 REMARK 3 S31: -0.3467 S32: 0.0459 S33: 0.1079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08; 18-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 115; 115 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; ESRF REMARK 200 BEAMLINE : BL11-1; ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98; 0.87 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S78 AND 1LP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M SODIUM CHLORIDE, 7.5% PEG3350, REMARK 280 0.1M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 279K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.86300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.14150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.92050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.14150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.86300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.92050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 102 REMARK 465 ASN A 103 REMARK 465 THR A 104 REMARK 465 THR A 105 REMARK 465 PRO A 106 REMARK 465 VAL A 107 REMARK 465 THR A 108 REMARK 465 GLY A 109 REMARK 465 ALA A 110 REMARK 465 PRO A 579 REMARK 465 SER A 580 REMARK 465 GLY A 581 REMARK 465 VAL A 582 REMARK 465 LYS A 583 REMARK 465 PRO A 584 REMARK 465 ASP A 585 REMARK 465 LEU A 586 REMARK 465 SER A 587 REMARK 465 TYR A 588 REMARK 465 MET A 589 REMARK 465 PRO A 590 REMARK 465 ILE A 591 REMARK 465 TRP A 592 REMARK 465 LYS A 593 REMARK 465 PHE A 594 REMARK 465 PRO A 595 REMARK 465 ASP A 596 REMARK 465 GLU A 597 REMARK 465 GLU A 598 REMARK 465 GLY A 599 REMARK 465 ALA A 600 REMARK 465 CYS A 601 REMARK 465 GLN A 602 REMARK 465 PRO A 603 REMARK 465 CYS A 604 REMARK 465 PRO A 605 REMARK 465 ILE A 606 REMARK 465 ASN A 607 REMARK 465 CYS A 608 REMARK 465 THR A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 CYS A 612 REMARK 465 VAL A 613 REMARK 465 ASP A 614 REMARK 465 LEU A 615 REMARK 465 ASP A 616 REMARK 465 ASP A 617 REMARK 465 LYS A 618 REMARK 465 GLY A 619 REMARK 465 CYS A 620 REMARK 465 PRO A 621 REMARK 465 ALA A 622 REMARK 465 GLU A 623 REMARK 465 GLN A 624 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 52.14 -159.03 REMARK 500 ASP A 8 53.20 -159.03 REMARK 500 LYS A 10 -127.53 42.09 REMARK 500 LYS A 10 -127.53 45.90 REMARK 500 PRO A 73 71.77 -67.70 REMARK 500 ASP A 88 23.19 45.45 REMARK 500 LEU A 120 53.56 -105.97 REMARK 500 ASN A 165 127.59 -39.71 REMARK 500 SER A 174 135.38 -35.31 REMARK 500 SER A 180 57.90 -111.71 REMARK 500 HIS A 235 -73.37 -116.86 REMARK 500 THR A 256 -2.35 -162.17 REMARK 500 HIS A 296 -4.66 62.66 REMARK 500 ASP A 304 -76.15 -72.28 REMARK 500 GLU A 326 -122.75 55.61 REMARK 500 GLU A 341 -9.75 -59.80 REMARK 500 ASN A 366 66.63 22.67 REMARK 500 ALA A 418 -43.05 -133.95 REMARK 500 LEU A 431 -68.58 -92.09 REMARK 500 ASN A 476 -155.00 -100.43 REMARK 500 GLN A 491 -47.93 -26.35 REMARK 500 ARG A 495 16.04 53.32 REMARK 500 GLN A 511 -86.30 -111.82 REMARK 500 ARG A 523 74.03 -100.54 REMARK 500 LEU A 528 -78.77 -43.63 REMARK 500 ASN A 534 117.04 -161.97 REMARK 500 HIS A 567 -90.19 -128.20 REMARK 500 ASP A 570 77.73 -118.74 REMARK 500 PRO A 571 135.48 -38.20 REMARK 500 ARG A 577 -89.15 -127.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 3MZW A 1 624 UNP P04626 ERBB2_HUMAN 23 646 DBREF 3MZW B 1 58 UNP P38507 SPA_STAAU 212 269 SEQADV 3MZW VAL B 1 UNP P38507 ALA 212 ENGINEERED MUTATION SEQADV 3MZW MET B 9 UNP P38507 GLN 220 ENGINEERED MUTATION SEQADV 3MZW ARG B 10 UNP P38507 GLN 221 ENGINEERED MUTATION SEQADV 3MZW TYR B 13 UNP P38507 PHE 224 ENGINEERED MUTATION SEQADV 3MZW TRP B 14 UNP P38507 TYR 225 ENGINEERED MUTATION SEQADV 3MZW ALA B 17 UNP P38507 LEU 228 ENGINEERED MUTATION SEQADV 3MZW LEU B 18 UNP P38507 HIS 229 ENGINEERED MUTATION SEQADV 3MZW ASN B 24 UNP P38507 GLU 235 ENGINEERED MUTATION SEQADV 3MZW GLN B 25 UNP P38507 GLU 236 ENGINEERED MUTATION SEQADV 3MZW LYS B 27 UNP P38507 ARG 238 ENGINEERED MUTATION SEQADV 3MZW ARG B 28 UNP P38507 ASN 239 ENGINEERED MUTATION SEQADV 3MZW ALA B 29 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 3MZW ARG B 32 UNP P38507 GLN 243 ENGINEERED MUTATION SEQADV 3MZW TYR B 35 UNP P38507 LYS 246 ENGINEERED MUTATION SEQRES 1 A 624 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 A 624 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 A 624 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 A 624 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 A 624 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 A 624 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 A 624 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 A 624 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 A 624 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 A 624 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 A 624 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 A 624 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 A 624 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 A 624 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 A 624 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 A 624 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 A 624 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 A 624 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 A 624 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 A 624 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 A 624 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 A 624 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 A 624 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 A 624 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 A 624 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 A 624 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 A 624 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 A 624 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 A 624 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 A 624 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 A 624 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 A 624 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 A 624 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 A 624 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 A 624 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 A 624 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 A 624 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 A 624 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 A 624 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 A 624 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 A 624 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 A 624 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 A 624 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 A 624 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 A 624 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 A 624 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 A 624 GLY ALA CYS GLN PRO CYS PRO ILE ASN CYS THR HIS SER SEQRES 48 A 624 CYS VAL ASP LEU ASP ASP LYS GLY CYS PRO ALA GLU GLN SEQRES 1 B 58 VAL ASP ASN LYS PHE ASN LYS GLU MET ARG ASN ALA TYR SEQRES 2 B 58 TRP GLU ILE ALA LEU LEU PRO ASN LEU ASN ASN GLN GLN SEQRES 3 B 58 LYS ARG ALA PHE ILE ARG SER LEU TYR ASP ASP PRO SER SEQRES 4 B 58 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 5 B 58 ASP ALA GLN ALA PRO LYS MODRES 3MZW ASN A 237 ASN GLYCOSYLATION SITE MODRES 3MZW ASN A 549 ASN GLYCOSYLATION SITE MODRES 3MZW ASN A 46 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A1046 14 HET NAG A1549 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 6 HOH *9(H2 O) HELIX 1 1 SER A 16 GLN A 29 1 14 HELIX 2 2 LEU A 49 GLN A 53 5 5 HELIX 3 3 LEU A 85 ASP A 88 5 4 HELIX 4 4 TYR A 141 ILE A 145 5 5 HELIX 5 5 LEU A 146 PHE A 151 1 6 HELIX 6 6 HIS A 152 GLN A 156 5 5 HELIX 7 7 SER A 186 CYS A 190 5 5 HELIX 8 8 LEU A 209 CYS A 213 5 5 HELIX 9 9 MET A 325 ARG A 329 5 5 HELIX 10 10 ASN A 338 ALA A 343 5 6 HELIX 11 11 LEU A 355 ASP A 360 1 6 HELIX 12 12 ASP A 362 ASN A 366 5 5 HELIX 13 13 GLN A 371 LEU A 381 5 11 HELIX 14 14 LEU A 400 GLN A 404 5 5 HELIX 15 15 LEU A 414 GLY A 417 5 4 HELIX 16 16 PRO A 459 PHE A 464 1 6 HELIX 17 17 PRO A 478 GLU A 485 1 8 HELIX 18 18 CYS A 493 HIS A 497 5 5 HELIX 19 19 ASN B 6 LEU B 19 1 14 HELIX 20 20 ASN B 23 ASP B 37 1 15 HELIX 21 21 GLN B 40 GLN B 55 1 16 SHEET 1 A 5 VAL A 3 THR A 5 0 SHEET 2 A 5 VAL A 33 GLN A 35 1 O GLN A 35 N CYS A 4 SHEET 3 A 5 GLU A 57 VAL A 58 1 O GLU A 57 N VAL A 34 SHEET 4 A 5 ILE A 79 VAL A 80 1 O ILE A 79 N VAL A 58 SHEET 5 A 5 GLU A 125 ILE A 126 1 O GLU A 125 N VAL A 80 SHEET 1 B 5 LEU A 38 THR A 41 0 SHEET 2 B 5 VAL A 62 ALA A 65 1 O LEU A 63 N LEU A 40 SHEET 3 B 5 TYR A 90 LEU A 95 1 O ALA A 93 N VAL A 62 SHEET 4 B 5 GLY A 130 GLN A 134 1 O GLY A 130 N ALA A 91 SHEET 5 B 5 THR A 160 ILE A 162 1 O LEU A 161 N ILE A 133 SHEET 1 C 2 PHE A 236 HIS A 238 0 SHEET 2 C 2 ILE A 241 GLU A 243 -1 O GLU A 243 N PHE A 236 SHEET 1 D 2 VAL A 250 TYR A 252 0 SHEET 2 D 2 SER A 259 PRO A 261 -1 O MET A 260 N THR A 251 SHEET 1 E 2 TYR A 267 PHE A 269 0 SHEET 2 E 2 SER A 272 VAL A 274 -1 O VAL A 274 N TYR A 267 SHEET 1 F 2 LEU A 282 SER A 283 0 SHEET 2 F 2 CYS A 289 THR A 290 -1 O THR A 290 N LEU A 282 SHEET 1 G 2 ASN A 297 THR A 301 0 SHEET 2 G 2 GLN A 307 LYS A 311 -1 O GLU A 310 N GLN A 298 SHEET 1 H 5 CYS A 320 TYR A 321 0 SHEET 2 H 5 LYS A 347 PHE A 349 1 O PHE A 349 N CYS A 320 SHEET 3 H 5 GLU A 383 ILE A 384 1 O GLU A 383 N ILE A 348 SHEET 4 H 5 VAL A 408 ILE A 409 1 O VAL A 408 N ILE A 384 SHEET 5 H 5 GLU A 438 LEU A 439 1 O GLU A 438 N ILE A 409 SHEET 1 I 5 LEU A 352 PHE A 354 0 SHEET 2 I 5 LEU A 388 ILE A 390 1 O TYR A 389 N LEU A 352 SHEET 3 I 5 TYR A 419 GLN A 424 1 O THR A 422 N ILE A 390 SHEET 4 I 5 LEU A 443 HIS A 447 1 O LEU A 445 N LEU A 423 SHEET 5 I 5 LEU A 471 THR A 474 1 O LEU A 472 N ALA A 444 SHEET 1 J 2 PHE A 512 ARG A 514 0 SHEET 2 J 2 GLU A 517 VAL A 519 -1 O VAL A 519 N PHE A 512 SHEET 1 K 2 GLU A 531 ASN A 534 0 SHEET 2 K 2 HIS A 537 PRO A 540 -1 O LEU A 539 N TYR A 532 SHEET 1 L 2 TYR A 568 ASP A 570 0 SHEET 2 L 2 PHE A 573 VAL A 575 -1 O VAL A 575 N TYR A 568 SSBOND 1 CYS A 4 CYS A 31 1555 1555 2.06 SSBOND 2 CYS A 140 CYS A 170 1555 1555 2.05 SSBOND 3 CYS A 173 CYS A 182 1555 1555 2.03 SSBOND 4 CYS A 177 CYS A 190 1555 1555 2.04 SSBOND 5 CYS A 198 CYS A 205 1555 1555 2.04 SSBOND 6 CYS A 202 CYS A 213 1555 1555 2.03 SSBOND 7 CYS A 214 CYS A 222 1555 1555 2.05 SSBOND 8 CYS A 218 CYS A 230 1555 1555 2.04 SSBOND 9 CYS A 233 CYS A 242 1555 1555 2.05 SSBOND 10 CYS A 246 CYS A 273 1555 1555 2.04 SSBOND 11 CYS A 277 CYS A 289 1555 1555 2.04 SSBOND 12 CYS A 293 CYS A 309 1555 1555 2.04 SSBOND 13 CYS A 312 CYS A 316 1555 1555 2.04 SSBOND 14 CYS A 320 CYS A 345 1555 1555 2.05 SSBOND 15 CYS A 453 CYS A 482 1555 1555 2.06 SSBOND 16 CYS A 489 CYS A 498 1555 1555 2.06 SSBOND 17 CYS A 493 CYS A 506 1555 1555 2.04 SSBOND 18 CYS A 509 CYS A 518 1555 1555 2.07 SSBOND 19 CYS A 522 CYS A 538 1555 1555 2.04 SSBOND 20 CYS A 541 CYS A 554 1555 1555 2.04 SSBOND 21 CYS A 545 CYS A 562 1555 1555 2.03 SSBOND 22 CYS A 565 CYS A 574 1555 1555 2.04 LINK ND2 ASN A 46 C1 NAG A1046 1555 1555 1.48 LINK ND2 ASN A 237 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 549 C1 NAG A1549 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 PRO A 571 PRO A 572 0 0.24 CRYST1 71.726 97.841 148.283 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013942 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006744 0.00000