PDB Short entry for 3N00 HEADER TRANSCRIPTION REGULATOR 13-MAY-10 3N00 TITLE CRYSTAL STRUCTURE OF A DELETION MUTANT OF HUMAN REVERBA LIGAND BINDING TITLE 2 DOMAIN BOUND WITH AN NCOR ID1 PEPTIDE DETERMINED TO 2.60A COMPND MOL_ID: 1; COMPND 2 MOLECULE: REV-ERBA-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP D MEMBER 1, V-ERBA- COMPND 5 RELATED PROTEIN 1, EAR-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: CORNR BOX 2 RESIDUES 2045-2065; COMPND 11 SYNONYM: N-COR1, N-COR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1D1, EAR1, HREV, THRAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS REVERBA NCORID1, ANTI-PARALLEL B-SHEET, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.GAMPE,R.NOLTE REVDAT 4 06-SEP-23 3N00 1 SEQADV REVDAT 3 16-AUG-17 3N00 1 SOURCE REMARK REVDAT 2 21-JUL-10 3N00 1 JRNL REVDAT 1 30-JUN-10 3N00 0 JRNL AUTH C.A.PHELAN,R.T.GAMPE,M.H.LAMBERT,D.J.PARKS,V.MONTANA, JRNL AUTH 2 J.BYNUM,T.M.BRODERICK,X.HU,S.P.WILLIAMS,R.T.NOLTE,M.A.LAZAR JRNL TITL STRUCTURE OF REV-ERBALPHA BOUND TO N-COR REVEALS A UNIQUE JRNL TITL 2 MECHANISM OF NUCLEAR RECEPTOR-CO-REPRESSOR INTERACTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 808 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20581824 JRNL DOI 10.1038/NSMB.1860 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 6.0.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1570 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1055 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2116 ; 1.126 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2564 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 5.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;28.156 ;23.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1730 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1012 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 417 ; 0.067 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1610 ; 1.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 558 ; 1.591 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 506 ; 2.900 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL OF PRECIPITANT COMPOSED OF 6-9% OF REMARK 280 PEG 3350, 8% GLYCEROL, 200MM PROLINE, 80MM HEPES WAS MIXED WITH REMARK 280 1UL OF THE REV-ERBA NCOR COMPLEX AT 5-6 MG/LIT TO OBTAIN REMARK 280 DIFFRACTION GRADE CRYSTALS, PH 7.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.49039 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.61100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.27500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.49039 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.61100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.27500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.49039 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.61100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.27500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.49039 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.61100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.27500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.49039 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.61100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.27500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.49039 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.61100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.98077 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.22200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.98077 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.22200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.98077 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 69.22200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.98077 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.22200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.98077 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 69.22200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.98077 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 69.22200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 194.94232 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.83300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 271 REMARK 465 LYS A 272 REMARK 465 LYS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 GLY A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 THR A 400 REMARK 465 TYR A 401 REMARK 465 ALA A 402 REMARK 465 HIS A 403 REMARK 465 ASP A 404 REMARK 465 LYS A 405 REMARK 465 LEU A 406 REMARK 465 GLY A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 PRO A 410 REMARK 465 GLY A 411 REMARK 465 ASN A 412 REMARK 465 PHE A 413 REMARK 465 ASN A 414 REMARK 465 ALA A 415 REMARK 465 ASN A 416 REMARK 465 HIS A 417 REMARK 465 ALA A 418 REMARK 465 SER A 419 REMARK 465 GLY A 420 REMARK 465 SER A 421 REMARK 465 PRO A 422 REMARK 465 TYR A 423 REMARK 465 PRO A 424 REMARK 465 HIS A 425 REMARK 465 GLY A 426 REMARK 465 ARG A 427 REMARK 465 SER A 428 REMARK 465 GLY A 429 REMARK 465 ARG A 430 REMARK 465 THR A 431 REMARK 465 GLN A 493 REMARK 465 THR A 494 REMARK 465 VAL A 495 REMARK 465 MET A 496 REMARK 465 PHE A 497 REMARK 465 LEU A 498 REMARK 465 SER A 499 REMARK 465 ARG A 500 REMARK 465 THR A 501 REMARK 465 THR A 502 REMARK 465 TYR A 503 REMARK 465 SER A 504 REMARK 465 LEU A 505 REMARK 465 GLN A 506 REMARK 465 ASP A 612 REMARK 465 ALA A 613 REMARK 465 GLN A 614 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ARG A 294 CZ NH1 NH2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 ILE A 435 CG2 CD1 REMARK 470 ASP A 438 CB CG OD1 OD2 REMARK 470 SER A 442 OG REMARK 470 PHE A 484 CD1 CD2 CE1 CE2 CZ REMARK 470 ALA A 485 CB REMARK 470 LEU A 487 CG CD1 CD2 REMARK 470 PHE A 488 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 489 CB CG OD1 ND2 REMARK 470 VAL A 490 CB CG1 CG2 REMARK 470 LYS A 491 CB CG CD CE NZ REMARK 470 ASP A 492 CB CG OD1 OD2 REMARK 470 GLU A 507 CB CG CD OE1 OE2 REMARK 470 MET A 513 CG SD CE REMARK 470 LEU A 517 CG CD1 CD2 REMARK 470 SER A 518 CB OG REMARK 470 PHE A 521 CE1 CE2 CZ REMARK 470 ASP A 522 OD1 OD2 REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 LYS A 576 NZ REMARK 470 ARG A 610 CZ NH1 NH2 REMARK 470 GLN B2061 CG CD OE1 NE2 REMARK 470 ARG B2065 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 487 24.81 -75.07 REMARK 500 PHE A 488 -128.97 -94.00 REMARK 500 ASN A 489 -151.69 -171.08 REMARK 500 LYS A 491 -73.86 -67.98 REMARK 500 LEU A 516 -72.79 -73.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 432 GLN A 433 149.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VOV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DELETION MUTANT OF APO HUMAN REVERBB LIGAND REMARK 900 BINDING DOMAIN DETERMINED TO 2.40A REMARK 900 RELATED ID: 3CQV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEME BOUND HUMAN REVERBB LIGAND BINDING DOMAIN REMARK 900 BOUND DETERMINED TO 1.90A REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 324-422 WERE DELETED IN THIS CONSTRUCT. DBREF 3N00 A 281 422 UNP P20393 NR1D1_HUMAN 281 323 DBREF 3N00 A 423 614 UNP P20393 NR1D1_HUMAN 423 614 DBREF 3N00 B 2045 2065 UNP O75376 NCOR1_HUMAN 2045 2065 SEQADV 3N00 MET A 271 UNP P20393 EXPRESSION TAG SEQADV 3N00 LYS A 272 UNP P20393 EXPRESSION TAG SEQADV 3N00 LYS A 273 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 274 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 275 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 276 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 277 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 278 UNP P20393 EXPRESSION TAG SEQADV 3N00 HIS A 279 UNP P20393 EXPRESSION TAG SEQADV 3N00 GLY A 280 UNP P20393 EXPRESSION TAG SEQRES 1 A 245 MET LYS LYS HIS HIS HIS HIS HIS HIS GLY PRO GLU PRO SEQRES 2 A 245 THR VAL GLU ASP VAL ILE SER GLN VAL ALA ARG ALA HIS SEQRES 3 A 245 ARG GLU ILE PHE THR TYR ALA HIS ASP LYS LEU GLY SER SEQRES 4 A 245 SER PRO GLY ASN PHE ASN ALA ASN HIS ALA SER GLY SER SEQRES 5 A 245 PRO TYR PRO HIS GLY ARG SER GLY ARG THR VAL GLN GLU SEQRES 6 A 245 ILE TRP GLU ASP PHE SER MET SER PHE THR PRO ALA VAL SEQRES 7 A 245 ARG GLU VAL VAL GLU PHE ALA LYS HIS ILE PRO GLY PHE SEQRES 8 A 245 ARG ASP LEU SER GLN HIS ASP GLN VAL THR LEU LEU LYS SEQRES 9 A 245 ALA GLY THR PHE GLU VAL LEU MET VAL ARG PHE ALA SER SEQRES 10 A 245 LEU PHE ASN VAL LYS ASP GLN THR VAL MET PHE LEU SER SEQRES 11 A 245 ARG THR THR TYR SER LEU GLN GLU LEU GLY ALA MET GLY SEQRES 12 A 245 MET GLY ASP LEU LEU SER ALA MET PHE ASP PHE SER GLU SEQRES 13 A 245 LYS LEU ASN SER LEU ALA LEU THR GLU GLU GLU LEU GLY SEQRES 14 A 245 LEU PHE THR ALA VAL VAL LEU VAL SER ALA ASP ARG SER SEQRES 15 A 245 GLY MET GLU ASN SER ALA SER VAL GLU GLN LEU GLN GLU SEQRES 16 A 245 THR LEU LEU ARG ALA LEU ARG ALA LEU VAL LEU LYS ASN SEQRES 17 A 245 ARG PRO LEU GLU THR SER ARG PHE THR LYS LEU LEU LEU SEQRES 18 A 245 LYS LEU PRO ASP LEU ARG THR LEU ASN ASN MET HIS SER SEQRES 19 A 245 GLU LYS LEU LEU SER PHE ARG VAL ASP ALA GLN SEQRES 1 B 21 THR HIS ARG LEU ILE THR LEU ALA ASP HIS ILE CYS GLN SEQRES 2 B 21 ILE ILE THR GLN ASP PHE ALA ARG FORMUL 3 HOH *62(H2 O) HELIX 1 1 THR A 284 PHE A 300 1 17 HELIX 2 2 GLN A 433 ILE A 457 1 25 HELIX 3 3 GLY A 459 LEU A 463 5 5 HELIX 4 4 SER A 464 LEU A 487 1 24 HELIX 5 5 LEU A 508 GLY A 512 5 5 HELIX 6 6 MET A 513 LEU A 530 1 18 HELIX 7 7 THR A 533 SER A 547 1 15 HELIX 8 8 ASN A 555 ARG A 578 1 24 HELIX 9 9 SER A 583 LEU A 590 1 8 HELIX 10 10 LEU A 590 SER A 603 1 14 HELIX 11 11 LEU B 2051 ARG B 2065 1 15 SHEET 1 A 2 LEU A 606 ARG A 610 0 SHEET 2 A 2 HIS B2046 THR B2050 -1 O ILE B2049 N LEU A 607 CRYST1 112.550 112.550 103.833 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008885 0.005130 0.000000 0.00000 SCALE2 0.000000 0.010259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009631 0.00000