PDB Short entry for 3N20 HEADER OXIDOREDUCTASE 17-MAY-10 3N20 TITLE X-RAY CRYSTAL STRUCTURE OF TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE TITLE 2 T201V MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT; COMPND 5 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE ALPHA SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE BETA SUBUNIT; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE GAMMA SUBUNIT; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 320855; SOURCE 4 STRAIN: OX1; SOURCE 5 GENE: TOUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B(+); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 12 ORGANISM_TAXID: 320855; SOURCE 13 STRAIN: OX1; SOURCE 14 GENE: TOUE; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B(+); SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 21 ORGANISM_TAXID: 320855; SOURCE 22 STRAIN: OX1; SOURCE 23 GENE: TOUB; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B(+) KEYWDS DIIRON, 4-HELIX BUNDLE, CARBOXYLATE BRIDGE, METALLOENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MCCORMICK,M.H.SAZINSKY,S.J.LIPPARD REVDAT 3 06-SEP-23 3N20 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3N20 1 VERSN REVDAT 1 13-OCT-10 3N20 0 JRNL AUTH W.J.SONG,M.S.MCCORMICK,R.K.BEHAN,M.H.SAZINSKY,W.JIANG,J.LIN, JRNL AUTH 2 C.KREBS,S.J.LIPPARD JRNL TITL ACTIVE SITE THREONINE FACILITATES PROTON TRANSFER DURING JRNL TITL 2 DIOXYGEN ACTIVATION AT THE DIIRON CENTER OF TOLUENE/O-XYLENE JRNL TITL 3 MONOOXYGENASE HYDROXYLASE. JRNL REF J.AM.CHEM.SOC. V. 132 13582 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20839885 JRNL DOI 10.1021/JA1063795 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 98258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5144 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.360 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2INC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 2.1-2.5 M REMARK 280 AMMONIUM SULFATE, 2-4% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.85933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.71867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.71867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.85933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 -91.44450 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 158.38652 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -91.44450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 158.38652 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.71867 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 493 REMARK 465 LYS A 494 REMARK 465 THR A 495 REMARK 465 ASN A 496 REMARK 465 ALA A 497 REMARK 465 ALA A 498 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 330 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 86 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 445 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 15 71.37 -103.31 REMARK 500 PHE A 200 -54.33 -128.45 REMARK 500 ASN A 248 -153.56 -104.15 REMARK 500 TYR A 279 -38.34 -136.90 REMARK 500 GLU A 326 -62.09 -123.59 REMARK 500 TRP A 338 30.25 -99.11 REMARK 500 THR A 368 -92.64 -117.23 REMARK 500 LYS A 384 57.60 -118.95 REMARK 500 MET A 399 -64.18 -104.67 REMARK 500 HIS A 406 -168.65 -170.12 REMARK 500 PRO A 408 -162.86 -107.55 REMARK 500 ASN A 413 43.63 -150.61 REMARK 500 ASP A 440 61.23 -156.57 REMARK 500 ARG B 22 -57.44 74.96 REMARK 500 ARG B 44 74.90 -153.38 REMARK 500 CYS B 62 -67.61 -107.59 REMARK 500 TYR B 125 -66.88 -101.99 REMARK 500 LEU B 276 2.33 -69.94 REMARK 500 ARG C 12 -5.61 77.97 REMARK 500 SER C 38 -47.43 -132.40 REMARK 500 ARG C 41 -50.20 -121.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 505 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE1 REMARK 620 2 GLU A 134 OE1 86.7 REMARK 620 3 HIS A 137 ND1 109.1 93.2 REMARK 620 4 P6G A 501 O19 85.2 83.3 165.2 REMARK 620 5 HOH A 507 O 161.0 103.7 86.4 80.4 REMARK 620 6 HOH A 509 O 84.7 167.9 97.7 87.4 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 506 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 GLU A 197 OE2 86.4 REMARK 620 3 GLU A 231 OE2 168.9 89.2 REMARK 620 4 HIS A 234 NE2 81.6 91.3 88.4 REMARK 620 5 P6G A 501 O19 79.7 97.3 111.0 158.8 REMARK 620 6 HOH A 507 O 102.4 171.2 82.0 88.8 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T0Q RELATED DB: PDB REMARK 900 WILD-TYPE FORM OF THE SAME PROTEIN AT 2.15 RESOLUTION REMARK 900 RELATED ID: 2INC RELATED DB: PDB REMARK 900 WILD-TYPE FORM OF THE SAME PROTEIN AT 1.85 RESOLUTION REMARK 900 RELATED ID: 2IND RELATED DB: PDB REMARK 900 MN(II) RECONSTITUTED FORM OF THE SAME PROTEIN WITH NO MUTATIONS REMARK 900 RELATED ID: 2RDB RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH ILE-100 MUTATED TO TRP IN THE HYDROXYLASE REMARK 900 ALPHA SUBUNIT REMARK 900 RELATED ID: 3N1Y RELATED DB: PDB REMARK 900 RELATED ID: 3N1Z RELATED DB: PDB REMARK 900 RELATED ID: 3N1X RELATED DB: PDB DBREF 3N20 A 1 498 UNP Q6IV66 Q6IV66_9PSED 1 498 DBREF 3N20 B 1 330 UNP Q6IV62 Q6IV62_9PSED 1 330 DBREF 3N20 C 1 86 UNP Q6IV65 Q6IV65_9PSED 1 86 SEQADV 3N20 VAL A 201 UNP Q6IV66 THR 201 ENGINEERED MUTATION SEQRES 1 A 498 MET SER MET LEU LYS ARG GLU ASP TRP TYR ASP LEU THR SEQRES 2 A 498 ARG THR THR ASN TRP THR PRO LYS TYR VAL THR GLU ASN SEQRES 3 A 498 GLU LEU PHE PRO GLU GLU MET SER GLY ALA ARG GLY ILE SEQRES 4 A 498 SER MET GLU ALA TRP GLU LYS TYR ASP GLU PRO TYR LYS SEQRES 5 A 498 ILE THR TYR PRO GLU TYR VAL SER ILE GLN ARG GLU LYS SEQRES 6 A 498 ASP SER GLY ALA TYR SER ILE LYS ALA ALA LEU GLU ARG SEQRES 7 A 498 ASP GLY PHE VAL ASP ARG ALA ASP PRO GLY TRP VAL SER SEQRES 8 A 498 THR MET GLN LEU HIS PHE GLY ALA ILE ALA LEU GLU GLU SEQRES 9 A 498 TYR ALA ALA SER THR ALA GLU ALA ARG MET ALA ARG PHE SEQRES 10 A 498 ALA LYS ALA PRO GLY ASN ARG ASN MET ALA THR PHE GLY SEQRES 11 A 498 MET MET ASP GLU ASN ARG HIS GLY GLN ILE GLN LEU TYR SEQRES 12 A 498 PHE PRO TYR ALA ASN VAL LYS ARG SER ARG LYS TRP ASP SEQRES 13 A 498 TRP ALA HIS LYS ALA ILE HIS THR ASN GLU TRP ALA ALA SEQRES 14 A 498 ILE ALA ALA ARG SER PHE PHE ASP ASP MET MET MET THR SEQRES 15 A 498 ARG ASP SER VAL ALA VAL SER ILE MET LEU THR PHE ALA SEQRES 16 A 498 PHE GLU THR GLY PHE VAL ASN MET GLN PHE LEU GLY LEU SEQRES 17 A 498 ALA ALA ASP ALA ALA GLU ALA GLY ASP HIS THR PHE ALA SEQRES 18 A 498 SER LEU ILE SER SER ILE GLN THR ASP GLU SER ARG HIS SEQRES 19 A 498 ALA GLN GLN GLY GLY PRO SER LEU LYS ILE LEU VAL GLU SEQRES 20 A 498 ASN GLY LYS LYS ASP GLU ALA GLN GLN MET VAL ASP VAL SEQRES 21 A 498 ALA ILE TRP ARG SER TRP LYS LEU PHE SER VAL LEU THR SEQRES 22 A 498 GLY PRO ILE MET ASP TYR TYR THR PRO LEU GLU SER ARG SEQRES 23 A 498 ASN GLN SER PHE LYS GLU PHE MET LEU GLU TRP ILE VAL SEQRES 24 A 498 ALA GLN PHE GLU ARG GLN LEU LEU ASP LEU GLY LEU ASP SEQRES 25 A 498 LYS PRO TRP TYR TRP ASP GLN PHE MET GLN ASP LEU ASP SEQRES 26 A 498 GLU THR HIS HIS GLY MET HIS LEU GLY VAL TRP TYR TRP SEQRES 27 A 498 ARG PRO THR VAL TRP TRP ASP PRO ALA ALA GLY VAL SER SEQRES 28 A 498 PRO GLU GLU ARG GLU TRP LEU GLU GLU LYS TYR PRO GLY SEQRES 29 A 498 TRP ASN ASP THR TRP GLY GLN CYS TRP ASP VAL ILE THR SEQRES 30 A 498 ASP ASN LEU VAL ASN GLY LYS PRO GLU LEU THR VAL PRO SEQRES 31 A 498 GLU THR LEU PRO THR ILE CYS ASN MET CYS ASN LEU PRO SEQRES 32 A 498 ILE ALA HIS THR PRO GLY ASN LYS TRP ASN VAL LYS ASP SEQRES 33 A 498 TYR GLN LEU GLU TYR GLU GLY ARG LEU TYR HIS PHE GLY SEQRES 34 A 498 SER GLU ALA ASP ARG TRP CYS PHE GLN ILE ASP PRO GLU SEQRES 35 A 498 ARG TYR GLU ASN HIS THR ASN LEU VAL ASP ARG PHE LEU SEQRES 36 A 498 LYS GLY GLU ILE GLN PRO ALA ASP LEU ALA GLY ALA LEU SEQRES 37 A 498 MET TYR MET SER LEU GLU PRO GLY VAL MET GLY ASP ASP SEQRES 38 A 498 ALA HIS ASP TYR GLU TRP VAL LYS ALA TYR GLN LYS LYS SEQRES 39 A 498 THR ASN ALA ALA SEQRES 1 B 330 MET SER GLU GLN GLN PRO GLU ALA LEU LYS PRO LEU LYS SEQRES 2 B 330 THR TRP SER HIS LEU ALA GLY ASN ARG ARG ARG PRO SER SEQRES 3 B 330 GLU TYR GLU VAL VAL SER THR ASN LEU HIS TYR PHE THR SEQRES 4 B 330 ASP ASN PRO GLU ARG PRO TRP GLU LEU ASP SER ASN LEU SEQRES 5 B 330 PRO MET GLN THR TRP TYR LYS LYS TYR CYS PHE ASP SER SEQRES 6 B 330 PRO LEU LYS HIS ASP ASP TRP ASN ALA PHE ARG ASP PRO SEQRES 7 B 330 ASP GLN LEU VAL TYR ARG THR TYR ASN LEU LEU GLN ASP SEQRES 8 B 330 GLY GLN GLU SER TYR VAL GLN GLY LEU PHE ASP GLN LEU SEQRES 9 B 330 ASN ASP ARG GLY HIS ASP GLN MET LEU THR ARG GLU TRP SEQRES 10 B 330 VAL GLU THR LEU ALA ARG PHE TYR THR PRO ALA ARG TYR SEQRES 11 B 330 LEU PHE HIS ALA LEU GLN MET GLY SER VAL TYR ILE HIS SEQRES 12 B 330 GLN ILE ALA PRO ALA SER THR ILE THR ASN CYS ALA THR SEQRES 13 B 330 TYR GLU THR ALA ASP HIS LEU ARG TRP LEU THR HIS THR SEQRES 14 B 330 ALA TYR ARG THR ARG GLU LEU ALA ASN CYS TYR PRO ASP SEQRES 15 B 330 VAL GLY PHE GLY LYS ARG GLU ARG ASP VAL TRP GLU ASN SEQRES 16 B 330 ASP PRO ALA TRP GLN GLY PHE ARG GLU LEU ILE GLU LYS SEQRES 17 B 330 ALA LEU ILE ALA TRP ASP TRP GLY GLU ALA PHE THR ALA SEQRES 18 B 330 ILE ASN LEU VAL THR LYS PRO ALA VAL GLU GLU ALA LEU SEQRES 19 B 330 LEU GLN GLN LEU GLY SER LEU ALA GLN SER GLU GLY ASP SEQRES 20 B 330 THR LEU LEU GLY LEU LEU ALA GLN ALA GLN LYS ARG ASP SEQRES 21 B 330 ALA GLU ARG HIS ARG ARG TRP SER SER ALA LEU VAL LYS SEQRES 22 B 330 MET ALA LEU GLU LYS GLU GLY ASN ARG GLU VAL LEU GLN SEQRES 23 B 330 LYS TRP VAL ALA LYS TRP GLU PRO LEU ALA ASP LYS ALA SEQRES 24 B 330 ILE GLU ALA TYR CYS SER ALA LEU PRO ASP GLY GLU ASN SEQRES 25 B 330 ALA ILE VAL GLU ALA LYS SER ALA SER ARG TYR VAL ARG SEQRES 26 B 330 GLN MET MET GLY LEU SEQRES 1 C 86 MET ALA THR PHE PRO ILE MET SER ASN PHE GLU ARG ASP SEQRES 2 C 86 PHE VAL ILE GLN LEU VAL PRO VAL ASP THR GLU ASP THR SEQRES 3 C 86 MET ASP GLN VAL ALA GLU LYS CYS ALA TYR HIS SER ILE SEQRES 4 C 86 ASN ARG ARG VAL HIS PRO GLN PRO GLU LYS ILE LEU ARG SEQRES 5 C 86 VAL ARG ARG HIS GLU ASP GLY THR LEU PHE PRO ARG GLY SEQRES 6 C 86 MET ILE VAL SER ASP ALA GLY LEU ARG PRO THR GLU THR SEQRES 7 C 86 LEU ASP ILE ILE PHE MET ASP ASN HET GOL A 499 6 HET GOL A 500 6 HET P6G A 501 19 HET P6G A 502 19 HET P6G A 503 19 HET P6G A 504 19 HET FE A 505 1 HET FE A 506 1 HET GOL B 331 6 HET GOL B 332 6 HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM FE FE (III) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 4 GOL 4(C3 H8 O3) FORMUL 6 P6G 4(C12 H26 O7) FORMUL 10 FE 2(FE 3+) FORMUL 14 HOH *560(H2 O) HELIX 1 1 LYS A 5 ARG A 14 1 10 HELIX 2 2 THR A 24 PHE A 29 1 6 HELIX 3 3 PRO A 30 GLY A 35 1 6 HELIX 4 4 SER A 40 GLU A 45 1 6 HELIX 5 5 THR A 54 GLU A 77 1 24 HELIX 6 6 GLY A 80 ALA A 85 5 6 HELIX 7 7 ASP A 86 ALA A 118 1 33 HELIX 8 8 ALA A 120 ALA A 147 1 28 HELIX 9 9 SER A 152 TRP A 155 5 4 HELIX 10 10 ASP A 156 ALA A 161 1 6 HELIX 11 11 ILE A 162 THR A 164 5 3 HELIX 12 12 GLU A 166 MET A 180 1 15 HELIX 13 13 ASP A 184 LEU A 192 1 9 HELIX 14 14 PHE A 200 ALA A 215 1 16 HELIX 15 15 ASP A 217 GLN A 236 1 20 HELIX 16 16 GLN A 237 ASN A 248 1 12 HELIX 17 17 LYS A 250 THR A 273 1 24 HELIX 18 18 THR A 273 TYR A 279 1 7 HELIX 19 19 PRO A 282 ARG A 286 5 5 HELIX 20 20 SER A 289 ILE A 298 1 10 HELIX 21 21 ILE A 298 GLY A 310 1 13 HELIX 22 22 TYR A 316 LEU A 324 1 9 HELIX 23 23 GLU A 326 TRP A 338 1 13 HELIX 24 24 ARG A 339 VAL A 342 5 4 HELIX 25 25 SER A 351 TYR A 362 1 12 HELIX 26 26 THR A 368 ASN A 382 1 15 HELIX 27 27 LYS A 384 VAL A 389 5 6 HELIX 28 28 PRO A 408 TRP A 412 5 5 HELIX 29 29 SER A 430 ILE A 439 1 10 HELIX 30 30 ASP A 440 TYR A 444 5 5 HELIX 31 31 ASN A 449 GLY A 457 1 9 HELIX 32 32 ASP A 463 MET A 471 1 9 HELIX 33 33 TYR A 485 GLN A 492 5 8 HELIX 34 34 SER B 26 THR B 33 1 8 HELIX 35 35 TYR B 37 ASN B 41 5 5 HELIX 36 36 LEU B 52 CYS B 62 1 11 HELIX 37 37 ASP B 71 PHE B 75 5 5 HELIX 38 38 VAL B 82 ARG B 107 1 26 HELIX 39 39 GLY B 108 LEU B 113 5 6 HELIX 40 40 THR B 114 TYR B 125 1 12 HELIX 41 41 PRO B 127 ALA B 146 1 20 HELIX 42 42 ALA B 148 TYR B 180 1 33 HELIX 43 43 ARG B 188 ASP B 196 1 9 HELIX 44 44 ASP B 196 LEU B 210 1 15 HELIX 45 45 ASP B 214 LEU B 224 1 11 HELIX 46 46 VAL B 225 LEU B 235 1 11 HELIX 47 47 LEU B 235 GLU B 245 1 11 HELIX 48 48 ASP B 247 LEU B 276 1 30 HELIX 49 49 GLY B 280 ALA B 306 1 27 HELIX 50 50 ASP B 309 MET B 327 1 19 HELIX 51 51 THR C 26 TYR C 36 1 11 HELIX 52 52 ILE C 67 ALA C 71 5 5 SHEET 1 A 2 LEU A 419 TYR A 421 0 SHEET 2 A 2 ARG A 424 TYR A 426 -1 O TYR A 426 N LEU A 419 SHEET 1 B 5 GLN C 17 VAL C 21 0 SHEET 2 B 5 PHE C 4 PHE C 10 -1 N SER C 8 O GLN C 17 SHEET 3 B 5 THR C 78 MET C 84 1 O LEU C 79 N MET C 7 SHEET 4 B 5 ILE C 50 ARG C 55 -1 N ARG C 54 O ASP C 80 SHEET 5 B 5 LEU C 61 PHE C 62 -1 O PHE C 62 N VAL C 53 LINK OE1 GLU A 104 FE FE A 505 1555 1555 2.20 LINK OE1 GLU A 134 FE FE A 505 1555 1555 2.21 LINK OE2 GLU A 134 FE FE A 506 1555 1555 2.20 LINK ND1 HIS A 137 FE FE A 505 1555 1555 2.25 LINK OE2 GLU A 197 FE FE A 506 1555 1555 2.07 LINK OE2 GLU A 231 FE FE A 506 1555 1555 2.30 LINK NE2 HIS A 234 FE FE A 506 1555 1555 2.22 LINK O19 P6G A 501 FE FE A 505 1555 1555 2.31 LINK O19 P6G A 501 FE FE A 506 1555 1555 2.19 LINK FE FE A 505 O HOH A 507 1555 1555 2.17 LINK FE FE A 505 O HOH A 509 1555 1555 2.34 LINK FE FE A 506 O HOH A 507 1555 1555 2.08 CISPEP 1 GLN A 460 PRO A 461 0 -1.68 SITE 1 AC1 3 GLU A 445 ASN A 446 ASN B 51 SITE 1 AC2 6 MET A 93 PHE A 144 ASN A 148 ASP A 217 SITE 2 AC2 6 HOH A 591 HOH A 717 SITE 1 AC3 17 ILE A 100 GLU A 104 ALA A 107 GLU A 134 SITE 2 AC3 17 PHE A 176 PHE A 196 GLU A 197 GLN A 204 SITE 3 AC3 17 LEU A 208 GLU A 231 LEU A 272 THR A 273 SITE 4 AC3 17 ILE A 276 FE A 505 FE A 506 HOH A 507 SITE 5 AC3 17 HOH A 787 SITE 1 AC4 7 TRP A 167 TRP A 338 PRO A 340 THR A 341 SITE 2 AC4 7 LEU A 393 PRO A 394 LEU A 464 SITE 1 AC5 10 LYS A 65 GLY A 68 ALA A 69 ILE A 72 SITE 2 AC5 10 LEU A 206 ALA A 209 SER A 225 SER A 226 SITE 3 AC5 10 GLN A 228 THR A 229 SITE 1 AC6 11 GLU A 391 THR A 392 PHE A 454 GLN A 460 SITE 2 AC6 11 ALA A 462 ASP A 463 HOH A 651 HOH A 745 SITE 3 AC6 11 HOH A 774 PRO C 20 HIS C 37 SITE 1 AC7 7 GLU A 104 GLU A 134 HIS A 137 P6G A 501 SITE 2 AC7 7 FE A 506 HOH A 507 HOH A 509 SITE 1 AC8 7 GLU A 134 GLU A 197 GLU A 231 HIS A 234 SITE 2 AC8 7 P6G A 501 FE A 505 HOH A 507 SITE 1 AC9 8 CYS B 62 SER B 65 LEU B 67 TRP B 72 SITE 2 AC9 8 TRP B 215 HOH B 424 HOH B 428 HOH B 540 SITE 1 BC1 8 THR B 39 ASP B 70 ASP B 71 TRP B 72 SITE 2 BC1 8 ASN B 73 PRO B 147 HOH B 424 HOH B 428 CRYST1 182.889 182.889 68.578 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005468 0.003157 0.000000 0.00000 SCALE2 0.000000 0.006314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014582 0.00000