PDB Short entry for 3N51 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-MAY-10 3N51 TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH BUMPED KINASE INHIBITOR RM-1-95 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TGCDPK1, RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: AAG53993, CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN, BUMPED KINASE INHIBITOR, STRUCTURAL GENOMICS, KEYWDS 3 MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP, KEYWDS 4 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 5 06-SEP-23 3N51 1 REMARK SEQADV REVDAT 4 08-NOV-17 3N51 1 REMARK REVDAT 3 23-MAR-11 3N51 1 JRNL REVDAT 2 27-OCT-10 3N51 1 JRNL REVDAT 1 21-JUL-10 3N51 0 JRNL AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, JRNL AUTH 2 B.G.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, JRNL AUTH 3 C.L.VERLINDE,A.C.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY JRNL TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF JRNL TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM JRNL TITL 3 AND T. GONDII. JRNL REF ACS MED CHEM LETT V. 1 331 2010 JRNL REFN ISSN 1948-5875 JRNL PMID 21116453 JRNL DOI 10.1021/ML100096T REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3767 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2638 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5072 ; 1.124 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6420 ; 0.801 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 5.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.670 ;24.835 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;14.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4137 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2246 ; 1.754 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 922 ; 0.544 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3634 ; 2.747 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1521 ; 3.509 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 5.099 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5229 16.3352 73.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.0194 REMARK 3 T33: 0.0858 T12: 0.0008 REMARK 3 T13: -0.0354 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.2186 L22: 2.5579 REMARK 3 L33: 5.9967 L12: -1.2264 REMARK 3 L13: 1.5101 L23: -2.5473 REMARK 3 S TENSOR REMARK 3 S11: -0.1762 S12: -0.1628 S13: 0.3426 REMARK 3 S21: 0.4186 S22: 0.0313 S23: -0.1502 REMARK 3 S31: -0.6629 S32: 0.0648 S33: 0.1448 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2022 12.0786 68.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.2026 REMARK 3 T33: 0.0773 T12: 0.0594 REMARK 3 T13: 0.0065 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.3720 L22: 2.5074 REMARK 3 L33: 3.2272 L12: -0.5029 REMARK 3 L13: -0.4472 L23: -1.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: -0.1102 S13: -0.1077 REMARK 3 S21: 0.2308 S22: 0.0676 S23: 0.1989 REMARK 3 S31: -0.0951 S32: -0.2092 S33: 0.0247 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2045 15.3831 52.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1052 REMARK 3 T33: 0.1172 T12: 0.0383 REMARK 3 T13: -0.0042 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.8289 L22: 1.7941 REMARK 3 L33: 1.9141 L12: -0.1304 REMARK 3 L13: 0.0929 L23: -0.9652 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: -0.0111 S13: -0.0273 REMARK 3 S21: -0.0833 S22: -0.1840 S23: -0.0841 REMARK 3 S31: 0.1403 S32: 0.2753 S33: 0.0748 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6856 21.8815 40.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.1009 T22: 0.0956 REMARK 3 T33: 0.0430 T12: 0.0434 REMARK 3 T13: -0.0256 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.0004 L22: 2.0994 REMARK 3 L33: 1.9115 L12: -0.5808 REMARK 3 L13: 0.1053 L23: -0.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.2397 S13: -0.0227 REMARK 3 S21: -0.3977 S22: -0.1207 S23: 0.0477 REMARK 3 S31: 0.1705 S32: 0.1922 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3339 22.4921 48.6979 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.2279 REMARK 3 T33: 0.1447 T12: 0.0492 REMARK 3 T13: 0.0333 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.1564 L22: 5.9801 REMARK 3 L33: 5.5212 L12: -0.0220 REMARK 3 L13: 0.6316 L23: 3.8100 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.2523 S13: -0.1491 REMARK 3 S21: 0.1437 S22: -0.1049 S23: 0.1601 REMARK 3 S31: 0.3535 S32: 0.1600 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3070 30.7042 86.9523 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.0859 REMARK 3 T33: 0.0515 T12: -0.0200 REMARK 3 T13: 0.0017 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 7.8035 L22: 9.4151 REMARK 3 L33: 4.6954 L12: -4.2935 REMARK 3 L13: -1.2487 L23: 1.2838 REMARK 3 S TENSOR REMARK 3 S11: 0.3026 S12: 0.4291 S13: -0.4989 REMARK 3 S21: 0.2772 S22: -0.3400 S23: 0.3355 REMARK 3 S31: 0.0352 S32: -0.5342 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4910 30.9201 83.8672 REMARK 3 T TENSOR REMARK 3 T11: 0.3546 T22: 0.2161 REMARK 3 T33: 0.0813 T12: 0.1821 REMARK 3 T13: -0.0284 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 8.5522 L22: 4.6317 REMARK 3 L33: 5.9226 L12: -5.9557 REMARK 3 L13: -0.0205 L23: -1.6627 REMARK 3 S TENSOR REMARK 3 S11: 1.1363 S12: 1.0301 S13: 0.1546 REMARK 3 S21: -0.9087 S22: -0.8369 S23: -0.0460 REMARK 3 S31: 0.4528 S32: 0.4937 S33: -0.2994 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8835 37.9198 54.4131 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0879 REMARK 3 T33: 0.1055 T12: 0.0247 REMARK 3 T13: -0.0203 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 3.3288 L22: 3.6165 REMARK 3 L33: 3.2787 L12: -0.9421 REMARK 3 L13: -0.9048 L23: 0.6450 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0438 S13: 0.1610 REMARK 3 S21: 0.1723 S22: 0.2474 S23: 0.0671 REMARK 3 S31: -0.1738 S32: -0.0899 S33: -0.2259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3N51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3I7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.25 M AMMONIUM CITRATE, REMARK 280 5 MM DTT, 2.3 MM RM-1-95; CRYOPROTECTED BY QUICK DIP INTO WELL REMARK 280 SOLN + FINAL CONC. (4.5% SGPP BUFFER, 9% ETHYLENE GLYCOL, 2 MM REMARK 280 RM-1-95), PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.37700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 ARG A 389 REMARK 465 MET A 390 REMARK 465 LYS A 391 REMARK 465 GLY A 392 REMARK 465 GLN A 393 REMARK 465 ASP A 394 REMARK 465 ALA A 395 REMARK 465 SER A 396 REMARK 465 MET A 397 REMARK 465 LEU A 398 REMARK 465 ASP A 399 REMARK 465 ALA A 400 REMARK 465 SER A 401 REMARK 465 ALA A 402 REMARK 465 VAL A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -4.19 77.03 REMARK 500 ILE A 72 -61.24 -102.54 REMARK 500 ARG A 173 -35.30 81.56 REMARK 500 GLU A 423 104.36 -59.65 REMARK 500 ASN A 487 32.00 -94.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK3 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 HOMOLOGUE FROM C. PARVUM IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INBHIBITOR NM-PP1 REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 SAME PROTEIN, APO FORM REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH NM-PP1 REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH NA-PP2 DBREF 3N51 A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3N51 GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3N51 PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3N51 GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3N51 SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3N51 MET A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3N51 MET A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET BK3 A 701 28 HET DMS A 705 4 HET EDO A 706 4 HETNAM BK3 3-(NAPHTHALEN-1-YLMETHYL)-1-(PIPERIDIN-4-YLMETHYL)-1H- HETNAM 2 BK3 PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BK3 C22 H24 N6 FORMUL 3 DMS C2 H6 O S FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *93(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LEU A 106 1 15 HELIX 3 3 GLU A 135 ILE A 141 1 7 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 GLY A 197 HIS A 201 5 5 HELIX 7 7 LYS A 207 LYS A 211 5 5 HELIX 8 8 GLY A 213 ILE A 218 1 6 HELIX 9 9 ALA A 219 GLY A 225 1 7 HELIX 10 10 GLU A 229 GLY A 246 1 18 HELIX 11 11 ASN A 254 GLY A 265 1 12 HELIX 12 12 LEU A 271 VAL A 277 5 7 HELIX 13 13 SER A 278 LEU A 289 1 12 HELIX 14 14 SER A 298 ASP A 304 1 7 HELIX 15 15 HIS A 305 THR A 312 1 8 HELIX 16 16 LEU A 323 ASP A 368 1 46 HELIX 17 17 ASP A 376 MET A 388 1 13 HELIX 18 18 GLU A 404 ASP A 415 1 12 HELIX 19 19 TYR A 424 THR A 436 1 13 HELIX 20 20 THR A 436 ASP A 451 1 16 HELIX 21 21 SER A 460 SER A 470 1 11 HELIX 22 22 ASP A 473 ASP A 485 1 13 HELIX 23 23 ASP A 493 LEU A 504 1 12 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O LEU A 67 N ARG A 55 SHEET 3 A 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 GLN A 374 LEU A 375 0 SHEET 2 C 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 D 2 ILE A 458 SER A 459 0 SHEET 2 D 2 GLU A 491 VAL A 492 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 15 LEU A 57 VAL A 65 ALA A 78 LYS A 80 SITE 2 AC1 15 MET A 112 LEU A 126 GLU A 129 VAL A 130 SITE 3 AC1 15 TYR A 131 GLU A 135 GLU A 178 LEU A 181 SITE 4 AC1 15 ASP A 195 HOH A 828 HOH A 857 SITE 1 AC2 5 TYR A 267 ARG A 286 ASN A 419 GLY A 420 SITE 2 AC2 5 TYR A 421 SITE 1 AC3 5 HIS A 108 SER A 160 THR A 163 TYR A 164 SITE 2 AC3 5 LYS A 167 CRYST1 47.523 72.754 66.024 90.00 98.88 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021042 0.000000 0.003289 0.00000 SCALE2 0.000000 0.013745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015330 0.00000