PDB Short entry for 3N9V HEADER HYDROLASE 31-MAY-10 3N9V TITLE CRYSTAL STRUCTURE OF INPP5B COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 342-647; COMPND 5 SYNONYM: PHOSPHOINOSITIDE 5-PHOSPHATASE, 5PTASE, 75 KDA INOSITOL COMPND 6 POLYPHOSPHATE-5-PHOSPHATASE; COMPND 7 EC: 3.1.3.36; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPP5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2 KEYWDS INPP5B, PHOSPHOINOSITIDE 5-PHOSPHATASE, INOSITOL SIGNALLING, KEYWDS 2 PHOSPHATASE, MAGNESIUM, STRUCTURAL GENOMICS, SGC, SGC STOCKHOLM, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.WELIN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 T.KARLBERG,S.KOL,T.KOTENYOVA,M.MOCHE,T.NYMAN,C.PERSSON,H.SCHULER, AUTHOR 4 P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL,S.VAN DER BERG,E.WAHLBERG, AUTHOR 5 J.WEIGELT,M.WISNIEWSKA,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 6 (SGC) REVDAT 3 06-SEP-23 3N9V 1 REMARK SEQADV LINK REVDAT 2 28-MAY-14 3N9V 1 JRNL VERSN REMARK REVDAT 1 28-JUL-10 3N9V 0 JRNL AUTH L.TRESAUGUES,C.SILVANDER,S.FLODIN,M.WELIN,T.NYMAN, JRNL AUTH 2 S.GRASLUND,M.HAMMARSTROM,H.BERGLUND,P.NORDLUND JRNL TITL STRUCTURAL BASIS FOR PHOSPHOINOSITIDE SUBSTRATE RECOGNITION, JRNL TITL 2 CATALYSIS, AND MEMBRANE INTERACTIONS IN HUMAN INOSITOL JRNL TITL 3 POLYPHOSPHATE 5-PHOSPHATASES JRNL REF STRUCTURE V. 22 744 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24704254 JRNL DOI 10.1016/J.STR.2014.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.6725 - 5.2986 0.99 3132 132 0.2075 0.2582 REMARK 3 2 5.2986 - 4.2061 1.00 3031 139 0.1429 0.1688 REMARK 3 3 4.2061 - 3.6746 1.00 2975 152 0.1609 0.1966 REMARK 3 4 3.6746 - 3.3387 1.00 2954 149 0.1771 0.2164 REMARK 3 5 3.3387 - 3.0994 1.00 2952 150 0.1909 0.2629 REMARK 3 6 3.0994 - 2.9167 1.00 2953 145 0.2193 0.2880 REMARK 3 7 2.9167 - 2.7706 1.00 2971 130 0.2358 0.2676 REMARK 3 8 2.7706 - 2.6500 1.00 2935 149 0.2631 0.3311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 49.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.14990 REMARK 3 B22 (A**2) : -0.45320 REMARK 3 B33 (A**2) : -9.69670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4763 REMARK 3 ANGLE : 1.257 6458 REMARK 3 CHIRALITY : 0.076 703 REMARK 3 PLANARITY : 0.005 829 REMARK 3 DIHEDRAL : 17.633 1655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 261:328) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8689 -6.3470 -20.3111 REMARK 3 T TENSOR REMARK 3 T11: 0.4229 T22: 0.4487 REMARK 3 T33: 0.4631 T12: 0.0352 REMARK 3 T13: 0.0573 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.6127 L22: 1.6215 REMARK 3 L33: 1.6476 L12: -1.0010 REMARK 3 L13: 0.6176 L23: -0.1828 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.1184 S13: 0.0965 REMARK 3 S21: 0.0560 S22: 0.0792 S23: 0.2434 REMARK 3 S31: -0.3385 S32: -0.3772 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 329:563) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9970 -17.7784 -25.6651 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.3204 REMARK 3 T33: 0.2865 T12: -0.0105 REMARK 3 T13: -0.0287 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.0760 L22: 3.0809 REMARK 3 L33: 2.1862 L12: -0.0259 REMARK 3 L13: -0.6768 L23: -0.6535 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.2461 S13: -0.1377 REMARK 3 S21: -0.3570 S22: 0.0850 S23: 0.3283 REMARK 3 S31: 0.3266 S32: -0.1548 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 261:404) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7149 -6.2028 -18.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.6137 T22: 0.4865 REMARK 3 T33: 0.5466 T12: -0.0028 REMARK 3 T13: -0.0462 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.0871 L22: 2.0725 REMARK 3 L33: 2.7175 L12: -0.5897 REMARK 3 L13: 0.6803 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.1194 S13: 0.1698 REMARK 3 S21: 0.0558 S22: 0.0594 S23: -0.2166 REMARK 3 S31: -0.0249 S32: 0.0267 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 405:562) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0555 7.8626 -18.2630 REMARK 3 T TENSOR REMARK 3 T11: 0.8021 T22: 0.5351 REMARK 3 T33: 0.8209 T12: -0.2399 REMARK 3 T13: -0.1063 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.6045 L22: 1.5881 REMARK 3 L33: 2.5961 L12: -0.3848 REMARK 3 L13: 1.8705 L23: -0.2000 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: -0.0020 S13: 0.6096 REMARK 3 S21: 0.5960 S22: 0.0289 S23: -0.4107 REMARK 3 S31: -1.1858 S32: 0.4034 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 72.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS-HCL REMARK 280 PH 8.5, 20% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 515 REMARK 465 LYS A 516 REMARK 465 CYS A 517 REMARK 465 ASN A 564 REMARK 465 ASP A 565 REMARK 465 GLU A 566 REMARK 465 ALA A 567 REMARK 465 HIS A 568 REMARK 465 HIS A 569 REMARK 465 HIS A 570 REMARK 465 HIS A 571 REMARK 465 HIS A 572 REMARK 465 HIS A 573 REMARK 465 GLN B 426 REMARK 465 PRO B 427 REMARK 465 ASP B 428 REMARK 465 PRO B 429 REMARK 465 SER B 430 REMARK 465 LEU B 431 REMARK 465 PRO B 432 REMARK 465 PRO B 433 REMARK 465 THR B 513 REMARK 465 SER B 514 REMARK 465 GLU B 515 REMARK 465 LYS B 516 REMARK 465 CYS B 517 REMARK 465 ARG B 518 REMARK 465 ASN B 564 REMARK 465 ASP B 565 REMARK 465 GLU B 566 REMARK 465 ALA B 567 REMARK 465 HIS B 568 REMARK 465 HIS B 569 REMARK 465 HIS B 570 REMARK 465 HIS B 571 REMARK 465 HIS B 572 REMARK 465 HIS B 573 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 261 CG SD CE REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 LYS A 324 CD CE NZ REMARK 470 ILE A 405 CG1 CG2 CD1 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 ASP A 456 CG OD1 OD2 REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 GLU A 465 CD OE1 OE2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 VAL A 563 CG1 CG2 REMARK 470 MET B 261 CG SD CE REMARK 470 LYS B 280 NZ REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 LYS B 324 CD CE NZ REMARK 470 ILE B 405 CG1 CG2 CD1 REMARK 470 GLU B 406 CG CD OE1 OE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 454 CG CD OE1 OE2 REMARK 470 ASP B 456 CG OD1 OD2 REMARK 470 GLU B 458 CG CD OE1 OE2 REMARK 470 LYS B 459 CG CD CE NZ REMARK 470 LYS B 462 CG CD CE NZ REMARK 470 ILE B 464 CG1 CG2 CD1 REMARK 470 GLU B 465 CD OE1 OE2 REMARK 470 GLU B 466 CG CD OE1 OE2 REMARK 470 LYS B 467 CD CE NZ REMARK 470 GLN B 470 CG CD OE1 NE2 REMARK 470 MET B 471 CG SD CE REMARK 470 LEU B 472 CD1 CD2 REMARK 470 LYS B 479 CG CD CE NZ REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ARG B 561 CD NE CZ NH1 NH2 REMARK 470 VAL B 563 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 288 72.80 -160.74 REMARK 500 HIS A 314 -49.74 71.74 REMARK 500 VAL A 345 -100.04 52.56 REMARK 500 MET A 374 19.53 57.90 REMARK 500 ARG A 376 -7.15 -143.21 REMARK 500 HIS A 390 -115.37 55.98 REMARK 500 ALA A 402 137.06 -35.87 REMARK 500 GLU A 407 75.19 -100.43 REMARK 500 ARG A 451 -169.80 -119.87 REMARK 500 GLU A 454 -54.04 70.41 REMARK 500 PRO A 520 160.00 -49.64 REMARK 500 SER B 288 64.96 -155.31 REMARK 500 HIS B 314 -54.99 72.51 REMARK 500 VAL B 345 -104.82 52.65 REMARK 500 ARG B 376 -13.25 -157.85 REMARK 500 HIS B 390 -114.58 53.70 REMARK 500 GLU B 454 -70.70 62.71 REMARK 500 LEU B 455 150.27 -49.98 REMARK 500 LYS B 485 19.27 56.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 61 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 17 O REMARK 620 2 HOH A 18 O 69.7 REMARK 620 3 ASN A 275 OD1 72.5 139.4 REMARK 620 4 GLU A 303 OE1 66.4 84.4 93.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 64 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 24 O REMARK 620 2 HOH A 39 O 78.0 REMARK 620 3 THR A 371 O 84.8 147.3 REMARK 620 4 ASP A 414 OD1 62.3 68.3 79.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 63 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 4 O REMARK 620 2 THR B 371 O 68.3 REMARK 620 3 ASP B 414 OD1 70.3 77.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 62 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 275 OD1 REMARK 620 2 GLU B 303 OE1 82.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 61 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 64 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 65 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 62 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 63 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MTC RELATED DB: PDB REMARK 900 COMPLEX BETWEEN INPP5B AND PRODUCT PTDINS-4-PHOSPHATE REMARK 900 RELATED ID: 3NR8 RELATED DB: PDB DBREF 3N9V A 262 567 UNP P32019 I5P2_HUMAN 342 647 DBREF 3N9V B 262 567 UNP P32019 I5P2_HUMAN 342 647 SEQADV 3N9V MET A 261 UNP P32019 INITIATING METHIONINE SEQADV 3N9V HIS A 568 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS A 569 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS A 570 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS A 571 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS A 572 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS A 573 UNP P32019 EXPRESSION TAG SEQADV 3N9V MET B 261 UNP P32019 INITIATING METHIONINE SEQADV 3N9V HIS B 568 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS B 569 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS B 570 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS B 571 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS B 572 UNP P32019 EXPRESSION TAG SEQADV 3N9V HIS B 573 UNP P32019 EXPRESSION TAG SEQRES 1 A 313 MET ILE GLN ASN PHE ARG PHE PHE ALA GLY THR TYR ASN SEQRES 2 A 313 VAL ASN GLY GLN SER PRO LYS GLU CYS LEU ARG LEU TRP SEQRES 3 A 313 LEU SER ASN GLY ILE GLN ALA PRO ASP VAL TYR CYS VAL SEQRES 4 A 313 GLY PHE GLN GLU LEU ASP LEU SER LYS GLU ALA PHE PHE SEQRES 5 A 313 PHE HIS ASP THR PRO LYS GLU GLU GLU TRP PHE LYS ALA SEQRES 6 A 313 VAL SER GLU GLY LEU HIS PRO ASP ALA LYS TYR ALA LYS SEQRES 7 A 313 VAL LYS LEU ILE ARG LEU VAL GLY ILE MET LEU LEU LEU SEQRES 8 A 313 TYR VAL LYS GLN GLU HIS ALA ALA TYR ILE SER GLU VAL SEQRES 9 A 313 GLU ALA GLU THR VAL GLY THR GLY ILE MET GLY ARG MET SEQRES 10 A 313 GLY ASN LYS GLY GLY VAL ALA ILE ARG PHE GLN PHE HIS SEQRES 11 A 313 ASN THR SER ILE CYS VAL VAL ASN SER HIS LEU ALA ALA SEQRES 12 A 313 HIS ILE GLU GLU TYR GLU ARG ARG ASN GLN ASP TYR LYS SEQRES 13 A 313 ASP ILE CYS SER ARG MET GLN PHE CYS GLN PRO ASP PRO SEQRES 14 A 313 SER LEU PRO PRO LEU THR ILE SER ASN HIS ASP VAL ILE SEQRES 15 A 313 LEU TRP LEU GLY ASP LEU ASN TYR ARG ILE GLU GLU LEU SEQRES 16 A 313 ASP VAL GLU LYS VAL LYS LYS LEU ILE GLU GLU LYS ASP SEQRES 17 A 313 PHE GLN MET LEU TYR ALA TYR ASP GLN LEU LYS ILE GLN SEQRES 18 A 313 VAL ALA ALA LYS THR VAL PHE GLU GLY PHE THR GLU GLY SEQRES 19 A 313 GLU LEU THR PHE GLN PRO THR TYR LYS TYR ASP THR GLY SEQRES 20 A 313 SER ASP ASP TRP ASP THR SER GLU LYS CYS ARG ALA PRO SEQRES 21 A 313 ALA TRP CYS ASP ARG ILE LEU TRP LYS GLY LYS ASN ILE SEQRES 22 A 313 THR GLN LEU SER TYR GLN SER HIS MET ALA LEU LYS THR SEQRES 23 A 313 SER ASP HIS LYS PRO VAL SER SER VAL PHE ASP ILE GLY SEQRES 24 A 313 VAL ARG VAL VAL ASN ASP GLU ALA HIS HIS HIS HIS HIS SEQRES 25 A 313 HIS SEQRES 1 B 313 MET ILE GLN ASN PHE ARG PHE PHE ALA GLY THR TYR ASN SEQRES 2 B 313 VAL ASN GLY GLN SER PRO LYS GLU CYS LEU ARG LEU TRP SEQRES 3 B 313 LEU SER ASN GLY ILE GLN ALA PRO ASP VAL TYR CYS VAL SEQRES 4 B 313 GLY PHE GLN GLU LEU ASP LEU SER LYS GLU ALA PHE PHE SEQRES 5 B 313 PHE HIS ASP THR PRO LYS GLU GLU GLU TRP PHE LYS ALA SEQRES 6 B 313 VAL SER GLU GLY LEU HIS PRO ASP ALA LYS TYR ALA LYS SEQRES 7 B 313 VAL LYS LEU ILE ARG LEU VAL GLY ILE MET LEU LEU LEU SEQRES 8 B 313 TYR VAL LYS GLN GLU HIS ALA ALA TYR ILE SER GLU VAL SEQRES 9 B 313 GLU ALA GLU THR VAL GLY THR GLY ILE MET GLY ARG MET SEQRES 10 B 313 GLY ASN LYS GLY GLY VAL ALA ILE ARG PHE GLN PHE HIS SEQRES 11 B 313 ASN THR SER ILE CYS VAL VAL ASN SER HIS LEU ALA ALA SEQRES 12 B 313 HIS ILE GLU GLU TYR GLU ARG ARG ASN GLN ASP TYR LYS SEQRES 13 B 313 ASP ILE CYS SER ARG MET GLN PHE CYS GLN PRO ASP PRO SEQRES 14 B 313 SER LEU PRO PRO LEU THR ILE SER ASN HIS ASP VAL ILE SEQRES 15 B 313 LEU TRP LEU GLY ASP LEU ASN TYR ARG ILE GLU GLU LEU SEQRES 16 B 313 ASP VAL GLU LYS VAL LYS LYS LEU ILE GLU GLU LYS ASP SEQRES 17 B 313 PHE GLN MET LEU TYR ALA TYR ASP GLN LEU LYS ILE GLN SEQRES 18 B 313 VAL ALA ALA LYS THR VAL PHE GLU GLY PHE THR GLU GLY SEQRES 19 B 313 GLU LEU THR PHE GLN PRO THR TYR LYS TYR ASP THR GLY SEQRES 20 B 313 SER ASP ASP TRP ASP THR SER GLU LYS CYS ARG ALA PRO SEQRES 21 B 313 ALA TRP CYS ASP ARG ILE LEU TRP LYS GLY LYS ASN ILE SEQRES 22 B 313 THR GLN LEU SER TYR GLN SER HIS MET ALA LEU LYS THR SEQRES 23 B 313 SER ASP HIS LYS PRO VAL SER SER VAL PHE ASP ILE GLY SEQRES 24 B 313 VAL ARG VAL VAL ASN ASP GLU ALA HIS HIS HIS HIS HIS SEQRES 25 B 313 HIS HET MG A 61 1 HET CA A 64 1 HET GOL A 65 6 HET MG B 62 1 HET CA B 63 1 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 CA 2(CA 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *57(H2 O) HELIX 1 1 LEU A 283 SER A 288 1 6 HELIX 2 2 SER A 307 HIS A 314 1 8 HELIX 3 3 PRO A 317 LEU A 330 1 14 HELIX 4 4 GLU A 356 ALA A 359 5 4 HELIX 5 5 GLY A 372 ARG A 376 5 5 HELIX 6 6 TYR A 408 MET A 422 1 15 HELIX 7 7 ASP A 456 GLU A 466 1 11 HELIX 8 8 ASP A 468 ALA A 474 1 7 HELIX 9 9 ASP A 476 ALA A 484 1 9 HELIX 10 10 LEU B 283 SER B 288 1 6 HELIX 11 11 SER B 307 HIS B 314 1 8 HELIX 12 12 PRO B 317 LEU B 330 1 14 HELIX 13 13 GLU B 356 ALA B 359 5 4 HELIX 14 14 GLY B 372 ARG B 376 5 5 HELIX 15 15 GLU B 407 MET B 422 1 16 HELIX 16 16 ASP B 456 LYS B 467 1 12 HELIX 17 17 ASP B 468 TYR B 475 1 8 HELIX 18 18 ASP B 476 ALA B 484 1 9 SHEET 1 A 6 TYR A 336 LEU A 344 0 SHEET 2 A 6 ILE A 347 LYS A 354 -1 O VAL A 353 N ALA A 337 SHEET 3 A 6 VAL A 296 GLN A 302 -1 N TYR A 297 O TYR A 352 SHEET 4 A 6 ILE A 262 ASN A 273 1 N GLY A 270 O GLY A 300 SHEET 5 A 6 VAL A 552 ARG A 561 -1 O SER A 554 N ALA A 269 SHEET 6 A 6 ILE A 533 SER A 540 -1 N LEU A 536 O VAL A 555 SHEET 1 B 5 ILE A 361 GLY A 370 0 SHEET 2 B 5 GLY A 381 PHE A 389 -1 O GLN A 388 N SER A 362 SHEET 3 B 5 THR A 392 HIS A 400 -1 O HIS A 400 N GLY A 381 SHEET 4 B 5 VAL A 441 ASP A 447 1 O LEU A 445 N VAL A 397 SHEET 5 B 5 ASP A 524 GLY A 530 -1 O LEU A 527 N TRP A 444 SHEET 1 C 6 TYR B 336 LEU B 344 0 SHEET 2 C 6 ILE B 347 LYS B 354 -1 O VAL B 353 N ALA B 337 SHEET 3 C 6 VAL B 296 GLN B 302 -1 N TYR B 297 O TYR B 352 SHEET 4 C 6 ILE B 262 ASN B 273 1 N PHE B 268 O VAL B 296 SHEET 5 C 6 VAL B 552 ARG B 561 -1 O PHE B 556 N PHE B 267 SHEET 6 C 6 ILE B 533 SER B 540 -1 N LEU B 536 O VAL B 555 SHEET 1 D 5 ILE B 361 GLY B 370 0 SHEET 2 D 5 GLY B 381 PHE B 389 -1 O GLN B 388 N SER B 362 SHEET 3 D 5 THR B 392 HIS B 400 -1 O ILE B 394 N PHE B 387 SHEET 4 D 5 VAL B 441 ASP B 447 1 O LEU B 445 N VAL B 397 SHEET 5 D 5 ASP B 524 LYS B 529 -1 O LEU B 527 N TRP B 444 SHEET 1 E 2 TYR B 502 TYR B 504 0 SHEET 2 E 2 TRP B 511 ALA B 521 -1 O ALA B 521 N TYR B 502 LINK O HOH A 17 MG MG A 61 1555 1555 2.35 LINK O HOH A 18 MG MG A 61 1555 1555 2.10 LINK O HOH A 24 CA CA A 64 1555 1555 2.26 LINK O HOH A 39 CA CA A 64 1555 1555 2.49 LINK MG MG A 61 OD1 ASN A 275 1555 1555 2.15 LINK MG MG A 61 OE1 GLU A 303 1555 1555 2.45 LINK CA CA A 64 O THR A 371 1555 1555 2.08 LINK CA CA A 64 OD1 ASP A 414 1555 1555 2.35 LINK O HOH B 4 CA CA B 63 1555 1555 2.79 LINK MG MG B 62 OD1 ASN B 275 1555 1555 2.48 LINK MG MG B 62 OE1 GLU B 303 1555 1555 2.27 LINK CA CA B 63 O THR B 371 1555 1555 2.11 LINK CA CA B 63 OD1 ASP B 414 1555 1555 2.52 CISPEP 1 TYR A 502 LYS A 503 0 0.73 CISPEP 2 TYR B 502 LYS B 503 0 -0.37 SITE 1 AC1 5 HOH A 17 HOH A 18 ASN A 275 GLU A 303 SITE 2 AC1 5 ASP A 548 SITE 1 AC2 4 HOH A 24 HOH A 39 THR A 371 ASP A 414 SITE 1 AC3 5 PHE A 265 GLN A 292 HIS A 357 TYR A 360 SITE 2 AC3 5 HIS A 390 SITE 1 AC4 2 ASN B 275 GLU B 303 SITE 1 AC5 4 HOH B 4 THR B 371 GLY B 372 ASP B 414 CRYST1 96.160 110.660 159.380 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006274 0.00000