PDB Short entry for 3NAN HEADER HYDROLASE 02-JUN-10 3NAN TITLE SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH A THAPSIGARGIN TITLE 2 DERIVATIVE BOC-(PHI)TG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERCA1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1 ISOFORM; COMPND 5 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: FAST TWITCH SKELETAL MUSCLE KEYWDS SERCA, P-TYPE ATPASE, CA2+-ATPASE, THAPSIGARGIN, PROSTATE CANCER, KEYWDS 2 CALCIUM TRANSPORT, ENDOPLASMIC RETICULUM, HYDROLASE, ION TRANSPORT, KEYWDS 3 SARCOPLASMIC RETICULUM, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.M.L.WINTHER,Y.SONNTAG,C.OLESEN,J.V.MOLLER,P.NISSEN REVDAT 4 01-NOV-23 3NAN 1 REMARK REVDAT 3 04-DEC-19 3NAN 1 REMARK REVDAT 2 22-SEP-10 3NAN 1 JRNL REVDAT 1 30-JUN-10 3NAN 0 JRNL AUTH A.M.L.WINTHER,H.LIU,Y.SONNTAG,C.OLESEN,M.LE MAIRE,H.SOEHOEL, JRNL AUTH 2 C.E.OLSEN,S.B.CHRISTENSEN,P.NISSEN,J.V.MOLLER JRNL TITL CRITICAL ROLES OF HYDROPHOBICITY AND ORIENTATION OF SIDE JRNL TITL 2 CHAINS FOR INACTIVATION OF SARCOPLASMIC RETICULUM JRNL TITL 3 CA2+-ATPASE WITH THAPSIGARGIN AND THAPSIGARGIN ANALOGS JRNL REF J.BIOL.CHEM. V. 285 28883 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20551329 JRNL DOI 10.1074/JBC.M110.136242 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 55 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.64000 REMARK 3 B22 (A**2) : 9.64000 REMARK 3 B33 (A**2) : -19.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.246 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.213 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.602 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.629 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 41.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : HZL_PTY.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9802 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29261 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : 0.15400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : 1.17400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2C8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% W/V PEG 2000 MME, 10% V/V REMARK 280 GLYCEROL, 0.1-0.2M MGSO4, 4% V/V TERT-BUTANOL, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 294.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.66500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.30250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.66500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 441.90750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.30250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 441.90750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 294.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -154.60 -150.87 REMARK 500 PRO A 42 132.04 -36.26 REMARK 500 THR A 84 136.60 -170.09 REMARK 500 SER A 178 -68.62 -23.68 REMARK 500 ASN A 275 45.76 -74.77 REMARK 500 HIS A 284 131.68 -178.71 REMARK 500 SER A 287 40.89 80.83 REMARK 500 ASN A 330 19.67 54.69 REMARK 500 VAL A 339 -17.53 -48.22 REMARK 500 LYS A 352 -81.68 -83.13 REMARK 500 THR A 353 -87.82 -24.41 REMARK 500 SER A 362 135.81 -170.12 REMARK 500 PRO A 391 49.91 -65.68 REMARK 500 ASP A 399 -0.80 60.24 REMARK 500 ASN A 453 93.95 -34.29 REMARK 500 THR A 457 99.78 -37.70 REMARK 500 ASN A 461 42.27 -82.02 REMARK 500 ALA A 470 -73.68 -44.40 REMARK 500 ARG A 489 -9.55 -58.90 REMARK 500 SER A 493 161.64 176.35 REMARK 500 ALA A 501 -124.67 80.72 REMARK 500 SER A 503 175.06 -55.87 REMARK 500 SER A 504 -7.36 85.16 REMARK 500 MET A 537 107.06 -49.23 REMARK 500 ARG A 556 -17.03 -43.59 REMARK 500 LEU A 578 29.84 -73.92 REMARK 500 ASP A 579 43.84 -146.81 REMARK 500 ASP A 580 87.19 -154.33 REMARK 500 SER A 581 -28.12 -36.39 REMARK 500 GLU A 588 50.59 -100.04 REMARK 500 LYS A 605 -72.73 -48.57 REMARK 500 GLU A 606 19.54 -62.10 REMARK 500 ASP A 650 37.97 -99.20 REMARK 500 LEU A 663 -27.84 -32.75 REMARK 500 ARG A 672 -33.97 -130.08 REMARK 500 CYS A 674 -24.81 -148.78 REMARK 500 ARG A 678 71.42 41.76 REMARK 500 ASP A 738 0.36 54.83 REMARK 500 GLU A 785 105.36 -47.36 REMARK 500 PRO A 820 176.11 -56.41 REMARK 500 TYR A 858 -9.93 91.25 REMARK 500 THR A 866 120.13 -24.24 REMARK 500 GLN A 869 98.03 -38.87 REMARK 500 CYS A 876 -51.86 -137.73 REMARK 500 GLU A 889 -10.81 -154.26 REMARK 500 MET A 925 78.52 -100.75 REMARK 500 TYR A 949 -64.97 -104.08 REMARK 500 VAL A 950 97.39 -38.99 REMARK 500 ASP A 951 -68.05 -18.44 REMARK 500 SER A 974 -72.12 -62.82 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 998 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 995 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 712 O REMARK 620 2 ALA A 714 O 89.1 REMARK 620 3 GLU A 732 OE2 142.8 116.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HZ1 A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BY4 RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE BOC-12ADT. REMARK 900 RELATED ID: 2C8K RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THAPSIGARGIN. REMARK 900 RELATED ID: 3NAL RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE DTB REMARK 900 RELATED ID: 3NAM RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE DOTG DBREF 3NAN A 1 994 UNP B6CAM1 B6CAM1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET K A 995 1 HET MG A 996 1 HET HZ1 A 997 67 HET PTY A 998 22 HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM HZ1 (3S,3AR,4S,6S,6AR,7S,8S,9R,9AS,9BS)-6-(ACETYLOXY)-4- HETNAM 2 HZ1 {[4-(3-{6-[(TERT-BUTOXYCARBONYL)AMINO]HEXYL}-4- HETNAM 3 HZ1 HYDROXYPHENYL)BUTANOYL]OXY}-3,3A-DIHYDROXY-3,6,9- HETNAM 4 HZ1 TRIMETHYL-8-{[(2Z)-2-METHYLBUT-2-ENOYL]OXY}-2- HETNAM 5 HZ1 OXODODECAHYDROAZULENO[4,5-B]FURAN-7-YL OCTANOATE HETNAM PTY PHOSPHATIDYLETHANOLAMINE FORMUL 2 K K 1+ FORMUL 3 MG MG 2+ FORMUL 4 HZ1 C51 H77 N O15 FORMUL 5 PTY C40 H80 N O8 P HELIX 1 1 SER A 8 PHE A 16 1 9 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 SER A 48 PHE A 57 1 10 HELIX 4 4 ASP A 59 ALA A 76 1 18 HELIX 5 5 TRP A 77 GLU A 79 5 3 HELIX 6 6 GLU A 80 THR A 84 5 5 HELIX 7 7 ILE A 85 ALA A 87 5 3 HELIX 8 8 PHE A 88 ASN A 111 1 24 HELIX 9 9 ASN A 114 LYS A 120 1 7 HELIX 10 10 GLU A 121 GLU A 123 5 3 HELIX 11 11 ARG A 143 ILE A 145 5 3 HELIX 12 12 GLN A 177 GLY A 182 1 6 HELIX 13 13 VAL A 200 LYS A 204 5 5 HELIX 14 14 THR A 226 SER A 229 5 4 HELIX 15 15 THR A 230 THR A 242 1 13 HELIX 16 16 THR A 247 ASN A 275 1 29 HELIX 17 17 ILE A 276 ASP A 281 5 6 HELIX 18 18 SER A 287 ILE A 307 1 21 HELIX 19 19 GLY A 310 LYS A 328 1 19 HELIX 20 20 PRO A 337 CYS A 344 1 8 HELIX 21 21 LYS A 352 THR A 357 1 6 HELIX 22 22 ARG A 403 GLN A 406 5 4 HELIX 23 23 PHE A 407 ASN A 421 1 15 HELIX 24 24 THR A 441 MET A 452 1 12 HELIX 25 25 SER A 463 ALA A 468 1 6 HELIX 26 26 ASN A 469 MET A 479 1 11 HELIX 27 27 ALA A 517 ASP A 523 1 7 HELIX 28 28 THR A 538 GLY A 555 1 18 HELIX 29 29 LYS A 572 MET A 576 5 5 HELIX 30 30 ASP A 580 GLU A 588 1 9 HELIX 31 31 ARG A 604 GLU A 606 5 3 HELIX 32 32 VAL A 607 ALA A 617 1 11 HELIX 33 33 ASN A 628 ILE A 639 1 12 HELIX 34 34 VAL A 648 ASP A 650 5 3 HELIX 35 35 GLY A 655 ASP A 660 1 6 HELIX 36 36 PRO A 662 ARG A 671 1 10 HELIX 37 37 GLU A 680 SER A 693 1 14 HELIX 38 38 GLY A 704 ASN A 706 5 3 HELIX 39 39 ASP A 707 LYS A 712 1 6 HELIX 40 40 THR A 724 SER A 731 1 8 HELIX 41 41 ASN A 739 LEU A 781 1 43 HELIX 42 42 ILE A 788 VAL A 798 1 11 HELIX 43 43 ASP A 800 LEU A 807 1 8 HELIX 44 44 GLY A 808 ASN A 810 5 3 HELIX 45 45 ASP A 815 ARG A 819 5 5 HELIX 46 46 SER A 830 MET A 857 1 28 HELIX 47 47 LEU A 870 GLN A 875 5 6 HELIX 48 48 GLU A 889 GLU A 892 5 4 HELIX 49 49 ALA A 893 ASN A 914 1 22 HELIX 50 50 SER A 915 SER A 917 5 3 HELIX 51 51 PRO A 926 VAL A 929 5 4 HELIX 52 52 ASN A 930 VAL A 950 1 21 HELIX 53 53 ASP A 951 LYS A 958 1 8 HELIX 54 54 ASP A 963 LEU A 975 1 13 HELIX 55 55 LEU A 975 TYR A 991 1 17 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N VAL A 129 O GLN A 138 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O ILE A 150 N TYR A 130 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 SER A 167 -1 N ARG A 164 O ILE A 222 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 C 8 ARG A 620 THR A 625 1 O ILE A 622 N ILE A 348 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 D 9 LYS A 400 ILE A 402 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N VAL A 395 O ILE A 402 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N THR A 566 O THR A 592 SHEET 7 D 9 LYS A 511 GLY A 516 -1 N MET A 512 O ARG A 567 SHEET 8 D 9 SER A 493 SER A 499 -1 N CYS A 498 O LYS A 511 SHEET 9 D 9 LYS A 480 LEU A 485 -1 N LYS A 480 O SER A 499 SHEET 1 E 7 LYS A 400 ILE A 402 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N VAL A 395 O ILE A 402 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 6 E 7 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 7 E 7 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 F 2 LEU A 425 ASN A 428 0 SHEET 2 F 2 VAL A 433 LYS A 436 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 636 CYS A 675 1555 1555 2.07 SSBOND 2 CYS A 876 CYS A 888 1555 1555 2.02 LINK OD1 ASP A 703 MG MG A 996 1555 1555 2.55 LINK O LYS A 712 K K A 995 1555 1555 3.09 LINK O ALA A 714 K K A 995 1555 1555 3.22 LINK OE2 GLU A 732 K K A 995 1555 1555 3.28 SITE 1 AC1 4 LEU A 711 LYS A 712 ALA A 714 GLU A 732 SITE 1 AC2 2 ASP A 703 ASP A 707 SITE 1 AC3 18 LEU A 61 ASN A 101 LEU A 253 GLU A 255 SITE 2 AC3 18 PHE A 256 GLN A 259 LEU A 260 VAL A 263 SITE 3 AC3 18 PRO A 308 GLU A 309 PRO A 312 VAL A 772 SITE 4 AC3 18 VAL A 773 LEU A 828 ILE A 829 PHE A 834 SITE 5 AC3 18 TYR A 837 PTY A 998 SITE 1 AC4 9 GLN A 56 VAL A 104 GLY A 105 GLN A 108 SITE 2 AC4 9 GLU A 309 PRO A 312 ALA A 313 THR A 316 SITE 3 AC4 9 HZ1 A 997 CRYST1 71.330 71.330 589.210 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001697 0.00000