PDB Short entry for 3NCB HEADER HORMONE/HORMONE RECEPTOR 04-JUN-10 3NCB TITLE A MUTANT HUMAN PROLACTIN RECEPTOR ANTAGONIST H180A IN COMPLEX WITH THE TITLE 2 EXTRACELLULAR DOMAIN OF THE HUMAN PROLACTIN RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLACTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 43-227; COMPND 5 SYNONYM: PRL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROLACTIN RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: EXTRACELLULAR DOMAIN RESIDUES 26-234; COMPND 12 SYNONYM: PRL-R; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPRL, PRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7L; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HPRLR, PRLR; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PH DEPENDENCE, HEMATOPOIETIC CYTOKINE, HORMONE-HORMONE RECEPTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.V.KULKARNI,M.C.TETTAMANZI,J.W.MURPHY,C.KEELER,D.G.MYSZKA, AUTHOR 2 N.E.CHAYEN,E.J.LOLIS,M.E.HODSDON REVDAT 5 06-SEP-23 3NCB 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3NCB 1 REMARK REVDAT 3 15-DEC-10 3NCB 1 JRNL REVDAT 2 20-OCT-10 3NCB 1 JRNL REVDAT 1 29-SEP-10 3NCB 0 JRNL AUTH M.V.KULKARNI,M.C.TETTAMANZI,J.W.MURPHY,C.KEELER,D.G.MYSZKA, JRNL AUTH 2 N.E.CHAYEN,E.J.LOLIS,M.E.HODSDON JRNL TITL TWO INDEPENDENT HISTIDINES, ONE IN HUMAN PROLACTIN AND ONE JRNL TITL 2 IN ITS RECEPTOR, ARE CRITICAL FOR PH-DEPENDENT RECEPTOR JRNL TITL 3 RECOGNITION AND ACTIVATION. JRNL REF J.BIOL.CHEM. V. 285 38524 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20889499 JRNL DOI 10.1074/JBC.M110.172072 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.12000 REMARK 3 B22 (A**2) : -2.12000 REMARK 3 B33 (A**2) : 3.18000 REMARK 3 B12 (A**2) : -1.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3390 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4628 ; 2.139 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;34.006 ;24.121 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;17.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2620 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2014 ; 1.522 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3289 ; 2.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 3.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1325 ; 6.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000059650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3MZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7M NACL, 0.1 M HEPES 7.5, 6% PEG REMARK 280 MONOMETHYLETHER 550, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.70400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.85200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.77800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.92600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 207 REMARK 465 MET B 208 REMARK 465 ASN B 209 REMARK 465 ASP B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 46 O HOH B 227 1.96 REMARK 500 OG SER A 62 O HOH A 232 2.04 REMARK 500 O HOH B 221 O HOH B 278 2.08 REMARK 500 OG SER A 57 OD1 ASN A 170 2.08 REMARK 500 CD GLU B 157 O HOH B 356 2.12 REMARK 500 NH2 ARG B 42 OE2 GLU B 45 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 50 CD GLU B 50 OE1 0.071 REMARK 500 GLU B 145 CB GLU B 145 CG -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ILE A 146 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 LEU B 135 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 107 67.73 -115.56 REMARK 500 GLU A 143 31.09 -82.01 REMARK 500 ASN B 16 15.85 -153.75 REMARK 500 THR B 28 155.49 -18.90 REMARK 500 ASP B 29 49.41 72.19 REMARK 500 CYS B 51 125.87 -36.53 REMARK 500 PRO B 116 -165.48 -78.47 REMARK 500 ASP B 118 92.30 28.60 REMARK 500 ARG B 119 130.71 153.23 REMARK 500 LYS B 120 126.42 -39.68 REMARK 500 LYS B 152 -5.53 75.37 REMARK 500 ASP B 205 28.67 -68.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 212 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 274 O REMARK 620 2 LYS B 66 O 92.5 REMARK 620 3 THR B 69 O 162.2 102.6 REMARK 620 4 HOH B 338 O 89.0 79.7 84.5 REMARK 620 5 HOH B 374 O 89.8 95.9 97.9 175.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 211 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 THR B 21 OG1 144.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 214 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 61 O REMARK 620 2 HOH B 358 O 131.7 REMARK 620 3 HOH B 375 O 110.1 110.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MZG RELATED DB: PDB REMARK 900 RELATED ID: 3N06 RELATED DB: PDB REMARK 900 RELATED ID: 3N0P RELATED DB: PDB REMARK 900 RELATED ID: 3NCC RELATED DB: PDB REMARK 900 RELATED ID: 3NCE RELATED DB: PDB REMARK 900 RELATED ID: 3NCF RELATED DB: PDB DBREF 3NCB A 15 199 UNP P01236 PRL_HUMAN 43 227 DBREF 3NCB B 2 210 UNP P16471 PRLR_HUMAN 26 234 SEQADV 3NCB MET A 14 UNP P01236 INITIATING METHIONINE SEQADV 3NCB ARG A 129 UNP P01236 GLY 157 ENGINEERED MUTATION SEQADV 3NCB ALA A 180 UNP P01236 HIS 208 ENGINEERED MUTATION SEQADV 3NCB MET B 1 UNP P16471 INITIATING METHIONINE SEQRES 1 A 186 MET LEU ARG ASP LEU PHE ASP ARG ALA VAL VAL LEU SER SEQRES 2 A 186 HIS TYR ILE HIS ASN LEU SER SER GLU MET PHE SER GLU SEQRES 3 A 186 PHE ASP LYS ARG TYR THR HIS GLY ARG GLY PHE ILE THR SEQRES 4 A 186 LYS ALA ILE ASN SER CYS HIS THR SER SER LEU ALA THR SEQRES 5 A 186 PRO GLU ASP LYS GLU GLN ALA GLN GLN MET ASN GLN LYS SEQRES 6 A 186 ASP PHE LEU SER LEU ILE VAL SER ILE LEU ARG SER TRP SEQRES 7 A 186 ASN GLU PRO LEU TYR HIS LEU VAL THR GLU VAL ARG GLY SEQRES 8 A 186 MET GLN GLU ALA PRO GLU ALA ILE LEU SER LYS ALA VAL SEQRES 9 A 186 GLU ILE GLU GLU GLN THR LYS ARG LEU LEU GLU ARG MET SEQRES 10 A 186 GLU LEU ILE VAL SER GLN VAL HIS PRO GLU THR LYS GLU SEQRES 11 A 186 ASN GLU ILE TYR PRO VAL TRP SER GLY LEU PRO SER LEU SEQRES 12 A 186 GLN MET ALA ASP GLU GLU SER ARG LEU SER ALA TYR TYR SEQRES 13 A 186 ASN LEU LEU HIS CYS LEU ARG ARG ASP SER ALA LYS ILE SEQRES 14 A 186 ASP ASN TYR LEU LYS LEU LEU LYS CYS ARG ILE ILE HIS SEQRES 15 A 186 ASN ASN ASN CYS SEQRES 1 B 210 MET LEU PRO PRO GLY LYS PRO GLU ILE PHE LYS CYS ARG SEQRES 2 B 210 SER PRO ASN LYS GLU THR PHE THR CYS TRP TRP ARG PRO SEQRES 3 B 210 GLY THR ASP GLY GLY LEU PRO THR ASN TYR SER LEU THR SEQRES 4 B 210 TYR HIS ARG GLU GLY GLU THR LEU MET HIS GLU CYS PRO SEQRES 5 B 210 ASP TYR ILE THR GLY GLY PRO ASN SER CYS HIS PHE GLY SEQRES 6 B 210 LYS GLN TYR THR SER MET TRP ARG THR TYR ILE MET MET SEQRES 7 B 210 VAL ASN ALA THR ASN GLN MET GLY SER SER PHE SER ASP SEQRES 8 B 210 GLU LEU TYR VAL ASP VAL THR TYR ILE VAL GLN PRO ASP SEQRES 9 B 210 PRO PRO LEU GLU LEU ALA VAL GLU VAL LYS GLN PRO GLU SEQRES 10 B 210 ASP ARG LYS PRO TYR LEU TRP ILE LYS TRP SER PRO PRO SEQRES 11 B 210 THR LEU ILE ASP LEU LYS THR GLY TRP PHE THR LEU LEU SEQRES 12 B 210 TYR GLU ILE ARG LEU LYS PRO GLU LYS ALA ALA GLU TRP SEQRES 13 B 210 GLU ILE HIS PHE ALA GLY GLN GLN THR GLU PHE LYS ILE SEQRES 14 B 210 LEU SER LEU HIS PRO GLY GLN LYS TYR LEU VAL GLN VAL SEQRES 15 B 210 ARG CYS LYS PRO ASP HIS GLY TYR TRP SER ALA TRP SER SEQRES 16 B 210 PRO ALA THR PHE ILE GLN ILE PRO SER ASP PHE THR MET SEQRES 17 B 210 ASN ASP HET CO3 A 5 4 HET NA B 211 1 HET NA B 212 1 HET CL B 213 1 HET NA B 214 1 HETNAM CO3 CARBONATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CO3 C O3 2- FORMUL 4 NA 3(NA 1+) FORMUL 6 CL CL 1- FORMUL 8 HOH *321(H2 O) HELIX 1 1 MET A 14 HIS A 46 1 33 HELIX 2 2 PHE A 50 ALA A 54 5 5 HELIX 3 3 ASP A 68 MET A 75 1 8 HELIX 4 4 ASN A 76 GLY A 104 1 29 HELIX 5 5 PRO A 109 HIS A 138 1 30 HELIX 6 6 GLY A 152 MET A 158 1 7 HELIX 7 7 ASP A 160 ASN A 196 1 37 HELIX 8 8 GLY B 65 THR B 69 5 5 HELIX 9 9 ASP B 96 ILE B 100 5 5 SHEET 1 A 3 GLU B 8 ARG B 13 0 SHEET 2 A 3 PHE B 20 ARG B 25 -1 O TRP B 23 N LYS B 11 SHEET 3 A 3 SER B 61 PHE B 64 -1 O PHE B 64 N PHE B 20 SHEET 1 B 4 HIS B 49 GLU B 50 0 SHEET 2 B 4 ASN B 35 ARG B 42 -1 N TYR B 40 O HIS B 49 SHEET 3 B 4 TYR B 75 ASN B 83 -1 O ILE B 76 N HIS B 41 SHEET 4 B 4 GLY B 86 PHE B 89 -1 O SER B 88 N ALA B 81 SHEET 1 C 4 HIS B 49 GLU B 50 0 SHEET 2 C 4 ASN B 35 ARG B 42 -1 N TYR B 40 O HIS B 49 SHEET 3 C 4 TYR B 75 ASN B 83 -1 O ILE B 76 N HIS B 41 SHEET 4 C 4 LEU B 93 VAL B 95 -1 O LEU B 93 N MET B 77 SHEET 1 D 3 LEU B 107 LYS B 114 0 SHEET 2 D 3 TYR B 122 SER B 128 -1 O SER B 128 N LEU B 107 SHEET 3 D 3 GLU B 166 ILE B 169 -1 O ILE B 169 N LEU B 123 SHEET 1 E 4 GLU B 157 GLY B 162 0 SHEET 2 E 4 LEU B 142 LYS B 149 -1 N LEU B 148 O GLU B 157 SHEET 3 E 4 LYS B 177 PRO B 186 -1 O GLN B 181 N ARG B 147 SHEET 4 E 4 THR B 198 GLN B 201 -1 O THR B 198 N VAL B 180 SSBOND 1 CYS A 58 CYS A 174 1555 1555 2.05 SSBOND 2 CYS A 191 CYS A 199 1555 1555 2.09 SSBOND 3 CYS B 12 CYS B 22 1555 1555 2.08 SSBOND 4 CYS B 51 CYS B 62 1555 1555 2.13 LINK O HOH A 274 NA NA B 212 1555 1555 2.35 LINK OG1 THR B 19 NA NA B 211 1555 1555 3.06 LINK OG1 THR B 21 NA NA B 211 1555 1555 3.06 LINK O SER B 61 NA NA B 214 1555 1555 2.81 LINK O LYS B 66 NA NA B 212 1555 1555 2.31 LINK O THR B 69 NA NA B 212 1555 1555 2.18 LINK NA NA B 212 O HOH B 338 1555 1555 2.21 LINK NA NA B 212 O HOH B 374 1555 1555 2.24 LINK NA NA B 214 O HOH B 358 1555 1555 3.03 LINK NA NA B 214 O HOH B 375 1555 1555 2.34 SITE 1 AC1 1 ARG A 21 SITE 1 AC2 5 PRO B 15 THR B 19 PHE B 20 THR B 21 SITE 2 AC2 5 HIS B 63 SITE 1 AC3 6 ASP A 68 HOH A 274 LYS B 66 THR B 69 SITE 2 AC3 6 HOH B 338 HOH B 374 SITE 1 AC4 1 TRP B 191 SITE 1 AC5 6 TRP B 24 TYR B 54 ASN B 60 SER B 61 SITE 2 AC5 6 HOH B 358 HOH B 375 CRYST1 124.210 124.210 71.556 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008051 0.004648 0.000000 0.00000 SCALE2 0.000000 0.009296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013975 0.00000