PDB Short entry for 3NGA HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-JUN-10 3NGA TITLE HUMAN CK2 CATALYTIC DOMAIN IN COMPLEX WITH CX-4945 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-333; COMPND 5 SYNONYM: CK II ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CK2, CK2A1, CSNK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS KINASE, CK2, INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.D.FERGUSON REVDAT 3 21-FEB-24 3NGA 1 REMARK REVDAT 2 02-FEB-11 3NGA 1 JRNL REVDAT 1 15-DEC-10 3NGA 0 JRNL AUTH A.D.FERGUSON,P.R.SHETH,A.D.BASSO,S.PALIWAL,K.GRAY, JRNL AUTH 2 T.O.FISCHMANN,H.V.LE JRNL TITL STRUCTURAL BASIS OF CX-4945 BINDING TO HUMAN PROTEIN KINASE JRNL TITL 2 CK2. JRNL REF FEBS LETT. V. 585 104 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21093442 JRNL DOI 10.1016/J.FEBSLET.2010.11.019 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2910 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2145 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2753 REMARK 3 BIN R VALUE (WORKING SET) : 0.2106 REMARK 3 BIN FREE R VALUE : 0.2826 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.37820 REMARK 3 B22 (A**2) : -4.37820 REMARK 3 B33 (A**2) : 8.75640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.338 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.517 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5829 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 7894 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 2042 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 166 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 841 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 5829 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 695 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6543 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 2 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4167 8.6054 40.7912 REMARK 3 T TENSOR REMARK 3 T11: -0.1383 T22: -0.0912 REMARK 3 T33: -0.1261 T12: 0.0766 REMARK 3 T13: 0.0163 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.5556 L22: 2.5414 REMARK 3 L33: 1.0415 L12: -1.0386 REMARK 3 L13: -0.0947 L23: -0.2366 REMARK 3 S TENSOR REMARK 3 S11: 0.1634 S12: 0.1988 S13: 0.0997 REMARK 3 S21: -0.3082 S22: -0.1842 S23: -0.0931 REMARK 3 S31: 0.0091 S32: -0.0868 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 2 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8472 9.3346 101.3770 REMARK 3 T TENSOR REMARK 3 T11: -0.0929 T22: -0.0993 REMARK 3 T33: -0.1292 T12: 0.0513 REMARK 3 T13: -0.0032 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.1966 L22: 1.9349 REMARK 3 L33: 1.3860 L12: -0.6297 REMARK 3 L13: -0.1983 L23: -0.2672 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: 0.0080 S13: -0.0016 REMARK 3 S21: -0.1337 S22: -0.1248 S23: 0.0319 REMARK 3 S31: -0.0370 S32: -0.0736 S33: -0.0160 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-26% PEG 4000, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM CITRATE PH 6, 1 MM MGCL2 AND 10 MM AMPPNP, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.87500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.82000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.31250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.82000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.43750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.82000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.31250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.82000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.43750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 333 REMARK 465 MET B 1 REMARK 465 ARG B 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 132 NH1 ARG A 169 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 156 45.84 -150.92 REMARK 500 ASP A 175 79.28 53.41 REMARK 500 ALA A 193 -179.60 62.93 REMARK 500 HIS A 234 66.16 -106.90 REMARK 500 ASP B 156 46.69 -150.39 REMARK 500 ASP B 175 79.20 53.40 REMARK 500 ALA B 193 178.86 62.34 REMARK 500 ASP B 237 -177.73 -173.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NG A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NG B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3004 DBREF 3NGA A 1 333 UNP P68400 CSK21_HUMAN 1 333 DBREF 3NGA B 1 333 UNP P68400 CSK21_HUMAN 1 333 SEQRES 1 A 333 MET SER GLY PRO VAL PRO SER ARG ALA ARG VAL TYR THR SEQRES 2 A 333 ASP VAL ASN THR HIS ARG PRO ARG GLU TYR TRP ASP TYR SEQRES 3 A 333 GLU SER HIS VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR SEQRES 4 A 333 GLN LEU VAL ARG LYS LEU GLY ARG GLY LYS TYR SER GLU SEQRES 5 A 333 VAL PHE GLU ALA ILE ASN ILE THR ASN ASN GLU LYS VAL SEQRES 6 A 333 VAL VAL LYS ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE SEQRES 7 A 333 LYS ARG GLU ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY SEQRES 8 A 333 PRO ASN ILE ILE THR LEU ALA ASP ILE VAL LYS ASP PRO SEQRES 9 A 333 VAL SER ARG THR PRO ALA LEU VAL PHE GLU HIS VAL ASN SEQRES 10 A 333 ASN THR ASP PHE LYS GLN LEU TYR GLN THR LEU THR ASP SEQRES 11 A 333 TYR ASP ILE ARG PHE TYR MET TYR GLU ILE LEU LYS ALA SEQRES 12 A 333 LEU ASP TYR CYS HIS SER MET GLY ILE MET HIS ARG ASP SEQRES 13 A 333 VAL LYS PRO HIS ASN VAL MET ILE ASP HIS GLU HIS ARG SEQRES 14 A 333 LYS LEU ARG LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR SEQRES 15 A 333 HIS PRO GLY GLN GLU TYR ASN VAL ARG VAL ALA SER ARG SEQRES 16 A 333 TYR PHE LYS GLY PRO GLU LEU LEU VAL ASP TYR GLN MET SEQRES 17 A 333 TYR ASP TYR SER LEU ASP MET TRP SER LEU GLY CYS MET SEQRES 18 A 333 LEU ALA SER MET ILE PHE ARG LYS GLU PRO PHE PHE HIS SEQRES 19 A 333 GLY HIS ASP ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS SEQRES 20 A 333 VAL LEU GLY THR GLU ASP LEU TYR ASP TYR ILE ASP LYS SEQRES 21 A 333 TYR ASN ILE GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU SEQRES 22 A 333 GLY ARG HIS SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SEQRES 23 A 333 SER GLU ASN GLN HIS LEU VAL SER PRO GLU ALA LEU ASP SEQRES 24 A 333 PHE LEU ASP LYS LEU LEU ARG TYR ASP HIS GLN SER ARG SEQRES 25 A 333 LEU THR ALA ARG GLU ALA MET GLU HIS PRO TYR PHE TYR SEQRES 26 A 333 THR VAL VAL LYS ASP GLN ALA ARG SEQRES 1 B 333 MET SER GLY PRO VAL PRO SER ARG ALA ARG VAL TYR THR SEQRES 2 B 333 ASP VAL ASN THR HIS ARG PRO ARG GLU TYR TRP ASP TYR SEQRES 3 B 333 GLU SER HIS VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR SEQRES 4 B 333 GLN LEU VAL ARG LYS LEU GLY ARG GLY LYS TYR SER GLU SEQRES 5 B 333 VAL PHE GLU ALA ILE ASN ILE THR ASN ASN GLU LYS VAL SEQRES 6 B 333 VAL VAL LYS ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE SEQRES 7 B 333 LYS ARG GLU ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY SEQRES 8 B 333 PRO ASN ILE ILE THR LEU ALA ASP ILE VAL LYS ASP PRO SEQRES 9 B 333 VAL SER ARG THR PRO ALA LEU VAL PHE GLU HIS VAL ASN SEQRES 10 B 333 ASN THR ASP PHE LYS GLN LEU TYR GLN THR LEU THR ASP SEQRES 11 B 333 TYR ASP ILE ARG PHE TYR MET TYR GLU ILE LEU LYS ALA SEQRES 12 B 333 LEU ASP TYR CYS HIS SER MET GLY ILE MET HIS ARG ASP SEQRES 13 B 333 VAL LYS PRO HIS ASN VAL MET ILE ASP HIS GLU HIS ARG SEQRES 14 B 333 LYS LEU ARG LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR SEQRES 15 B 333 HIS PRO GLY GLN GLU TYR ASN VAL ARG VAL ALA SER ARG SEQRES 16 B 333 TYR PHE LYS GLY PRO GLU LEU LEU VAL ASP TYR GLN MET SEQRES 17 B 333 TYR ASP TYR SER LEU ASP MET TRP SER LEU GLY CYS MET SEQRES 18 B 333 LEU ALA SER MET ILE PHE ARG LYS GLU PRO PHE PHE HIS SEQRES 19 B 333 GLY HIS ASP ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS SEQRES 20 B 333 VAL LEU GLY THR GLU ASP LEU TYR ASP TYR ILE ASP LYS SEQRES 21 B 333 TYR ASN ILE GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU SEQRES 22 B 333 GLY ARG HIS SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SEQRES 23 B 333 SER GLU ASN GLN HIS LEU VAL SER PRO GLU ALA LEU ASP SEQRES 24 B 333 PHE LEU ASP LYS LEU LEU ARG TYR ASP HIS GLN SER ARG SEQRES 25 B 333 LEU THR ALA ARG GLU ALA MET GLU HIS PRO TYR PHE TYR SEQRES 26 B 333 THR VAL VAL LYS ASP GLN ALA ARG HET 3NG A1000 25 HET SO4 A3000 5 HET SO4 A3001 5 HET SO4 A3005 5 HET SO4 A3007 5 HET 3NG B1000 25 HET SO4 B3002 5 HET SO4 B3003 5 HET SO4 B3004 5 HETNAM 3NG 5-[(3-CHLOROPHENYL)AMINO]BENZO[C][2,6]NAPHTHYRIDINE-8- HETNAM 2 3NG CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 3 3NG 2(C19 H12 CL N3 O2) FORMUL 4 SO4 7(O4 S 2-) FORMUL 12 HOH *116(H2 O) HELIX 1 1 PRO A 20 ASP A 25 1 6 HELIX 2 2 TYR A 26 HIS A 29 5 4 HELIX 3 3 LYS A 74 ARG A 89 1 16 HELIX 4 4 ASP A 120 TYR A 125 1 6 HELIX 5 5 GLN A 126 LEU A 128 5 3 HELIX 6 6 THR A 129 MET A 150 1 22 HELIX 7 7 LYS A 158 HIS A 160 5 3 HELIX 8 8 SER A 194 LYS A 198 5 5 HELIX 9 9 GLY A 199 VAL A 204 1 6 HELIX 10 10 TYR A 211 ARG A 228 1 18 HELIX 11 11 ASP A 237 GLY A 250 1 14 HELIX 12 12 GLY A 250 TYR A 261 1 12 HELIX 13 13 ARG A 268 GLY A 274 1 7 HELIX 14 14 ARG A 280 VAL A 285 5 6 HELIX 15 15 ASN A 289 VAL A 293 5 5 HELIX 16 16 SER A 294 LEU A 305 1 12 HELIX 17 17 ASP A 308 ARG A 312 5 5 HELIX 18 18 THR A 314 GLU A 320 1 7 HELIX 19 19 HIS A 321 TYR A 323 5 3 HELIX 20 20 PHE A 324 GLN A 331 1 8 HELIX 21 21 PRO B 20 ASP B 25 1 6 HELIX 22 22 TYR B 26 HIS B 29 5 4 HELIX 23 23 LYS B 74 ARG B 89 1 16 HELIX 24 24 ASP B 120 TYR B 125 1 6 HELIX 25 25 GLN B 126 LEU B 128 5 3 HELIX 26 26 THR B 129 MET B 150 1 22 HELIX 27 27 LYS B 158 HIS B 160 5 3 HELIX 28 28 SER B 194 LYS B 198 5 5 HELIX 29 29 GLY B 199 VAL B 204 1 6 HELIX 30 30 TYR B 211 ARG B 228 1 18 HELIX 31 31 ASP B 237 GLY B 250 1 14 HELIX 32 32 GLY B 250 TYR B 261 1 12 HELIX 33 33 ARG B 268 GLY B 274 1 7 HELIX 34 34 ARG B 280 VAL B 285 5 6 HELIX 35 35 ASN B 289 VAL B 293 5 5 HELIX 36 36 SER B 294 LEU B 305 1 12 HELIX 37 37 ASP B 308 ARG B 312 5 5 HELIX 38 38 THR B 314 GLU B 320 1 7 HELIX 39 39 HIS B 321 TYR B 323 5 3 HELIX 40 40 PHE B 324 GLN B 331 1 8 SHEET 1 A 6 GLY A 34 ASN A 35 0 SHEET 2 A 6 LEU A 97 LYS A 102 1 O ILE A 100 N GLY A 34 SHEET 3 A 6 PRO A 109 GLU A 114 -1 O VAL A 112 N ASP A 99 SHEET 4 A 6 LYS A 64 LEU A 70 -1 N LYS A 68 O LEU A 111 SHEET 5 A 6 SER A 51 ASN A 58 -1 N PHE A 54 O VAL A 67 SHEET 6 A 6 TYR A 39 ARG A 47 -1 N VAL A 42 O GLU A 55 SHEET 1 B 2 ILE A 152 MET A 153 0 SHEET 2 B 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 C 2 VAL A 162 ASP A 165 0 SHEET 2 C 2 LYS A 170 LEU A 173 -1 O LYS A 170 N ASP A 165 SHEET 1 D 6 GLY B 34 ASN B 35 0 SHEET 2 D 6 LEU B 97 LYS B 102 1 O ILE B 100 N GLY B 34 SHEET 3 D 6 PRO B 109 GLU B 114 -1 O ALA B 110 N VAL B 101 SHEET 4 D 6 LYS B 64 LEU B 70 -1 N LYS B 68 O LEU B 111 SHEET 5 D 6 SER B 51 ASN B 58 -1 N PHE B 54 O VAL B 67 SHEET 6 D 6 TYR B 39 ARG B 47 -1 N VAL B 42 O GLU B 55 SHEET 1 E 2 ILE B 152 MET B 153 0 SHEET 2 E 2 GLU B 180 PHE B 181 -1 O GLU B 180 N MET B 153 SHEET 1 F 2 VAL B 162 ASP B 165 0 SHEET 2 F 2 LYS B 170 LEU B 173 -1 O LYS B 170 N ASP B 165 CISPEP 1 GLU A 230 PRO A 231 0 -2.65 CISPEP 2 GLU B 230 PRO B 231 0 -0.56 SITE 1 AC1 12 LEU A 45 GLY A 46 VAL A 66 LYS A 68 SITE 2 AC1 12 PHE A 113 GLU A 114 HIS A 115 VAL A 116 SITE 3 AC1 12 HIS A 160 ILE A 174 ASP A 175 HOH A 345 SITE 1 AC2 5 LYS A 77 ARG A 80 ARG A 155 ASN A 189 SITE 2 AC2 5 HOH A 335 SITE 1 AC3 3 HIS A 276 SER A 277 LYS A 279 SITE 1 AC4 3 HIS A 234 HIS A 236 ARG A 244 SITE 1 AC5 4 ARG A 278 LYS A 279 ARG A 280 ARG A 283 SITE 1 AC6 13 LEU B 45 GLY B 46 VAL B 53 VAL B 66 SITE 2 AC6 13 LYS B 68 PHE B 113 GLU B 114 HIS B 115 SITE 3 AC6 13 VAL B 116 HIS B 160 ILE B 174 ASP B 175 SITE 4 AC6 13 HOH B 340 SITE 1 AC7 3 ARG B 80 ARG B 155 ASN B 189 SITE 1 AC8 3 ARG B 191 LYS B 198 ASN B 238 SITE 1 AC9 2 HIS B 276 LYS B 279 CRYST1 127.640 127.640 125.750 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007952 0.00000