PDB Short entry for 3NHG HEADER TRANSFERASE/DNA 14-JUN-10 3NHG TITLE RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE TITLE 2 DG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP43; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: TEMPLATE DNA STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'); COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: PRIMER DNA STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE RB69; SOURCE 4 ORGANISM_TAXID: 12353; SOURCE 5 GENE: 43, GP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS RB69 DNA POLYMERASE, FIDELITY, MUTATION FREQUENCIES, KINETICS, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.WANG,J.WANG,W.H.KONIGSBERG REVDAT 3 06-SEP-23 3NHG 1 REMARK SEQADV LINK REVDAT 2 02-MAR-11 3NHG 1 JRNL REVDAT 1 26-JAN-11 3NHG 0 JRNL AUTH S.XIA,M.WANG,H.R.LEE,A.SINHA,G.BLAHA,T.CHRISTIAN,J.WANG, JRNL AUTH 2 W.KONIGSBERG JRNL TITL VARIATION IN MUTATION RATES CAUSED BY RB69POL FIDELITY JRNL TITL 2 MUTANTS CAN BE RATIONALIZED ON THE BASIS OF THEIR KINETIC JRNL TITL 3 BEHAVIOR AND CRYSTAL STRUCTURES. JRNL REF J.MOL.BIOL. V. 406 558 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21216248 JRNL DOI 10.1016/J.JMB.2010.12.033 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 37719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7365 REMARK 3 NUCLEIC ACID ATOMS : 630 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.722 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8467 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11626 ; 1.197 ; 2.059 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 963 ; 5.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 391 ;35.752 ;24.297 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1393 ;16.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.787 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1233 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6311 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4601 ; 1.679 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7495 ; 2.798 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3866 ; 1.843 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4101 ; 2.841 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 1 T 18 REMARK 3 RESIDUE RANGE : P 103 P 115 REMARK 3 RESIDUE RANGE : X 1 X 1 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7340 -3.8350 36.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.2059 T22: 0.5134 REMARK 3 T33: 0.5936 T12: 0.0071 REMARK 3 T13: -0.0374 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.8816 L22: 0.4915 REMARK 3 L33: 0.4506 L12: 0.7036 REMARK 3 L13: -0.2224 L23: 0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: -0.0140 S13: 0.0511 REMARK 3 S21: 0.2032 S22: 0.0991 S23: -0.2477 REMARK 3 S31: 0.0818 S32: 0.0945 S33: 0.0429 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 RESIDUE RANGE : A 340 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2010 -0.0080 32.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.2662 REMARK 3 T33: 0.3152 T12: 0.0088 REMARK 3 T13: -0.0277 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.9988 L22: 2.6671 REMARK 3 L33: 1.1431 L12: -0.3281 REMARK 3 L13: 0.0778 L23: 0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0578 S13: 0.0281 REMARK 3 S21: -0.0847 S22: -0.1030 S23: 0.3152 REMARK 3 S31: -0.0777 S32: -0.1924 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6740 -23.8160 13.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.2247 REMARK 3 T33: 0.2209 T12: 0.0121 REMARK 3 T13: -0.0248 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.1586 L22: 1.6139 REMARK 3 L33: 1.8244 L12: -0.3700 REMARK 3 L13: 0.0786 L23: -0.2620 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0628 S13: 0.0033 REMARK 3 S21: -0.2022 S22: -0.1065 S23: -0.0064 REMARK 3 S31: 0.1162 S32: 0.1892 S33: 0.0889 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 468 REMARK 3 RESIDUE RANGE : A 576 A 706 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0190 -9.4730 60.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.2758 REMARK 3 T33: 0.1646 T12: 0.0500 REMARK 3 T13: 0.0127 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.4527 L22: 1.7748 REMARK 3 L33: 0.7552 L12: -0.6117 REMARK 3 L13: -0.3656 L23: 0.3895 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: -0.3339 S13: -0.0880 REMARK 3 S21: 0.4886 S22: 0.1442 S23: 0.0770 REMARK 3 S31: 0.1694 S32: 0.2023 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 469 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9350 -28.9750 46.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.2545 REMARK 3 T33: 0.2995 T12: -0.0319 REMARK 3 T13: 0.0302 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.6515 L22: 7.5738 REMARK 3 L33: 1.1074 L12: -1.2993 REMARK 3 L13: 0.1690 L23: -1.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.1337 S13: -0.2778 REMARK 3 S21: -0.2247 S22: 0.0093 S23: 0.4422 REMARK 3 S31: 0.3020 S32: -0.1072 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 707 A 737 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0640 -24.9120 48.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.2345 T22: 0.4348 REMARK 3 T33: 0.4291 T12: 0.0874 REMARK 3 T13: 0.0247 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: -0.2069 L22: 1.3103 REMARK 3 L33: 1.5116 L12: -0.4856 REMARK 3 L13: -0.1506 L23: 1.4988 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.0173 S13: -0.0755 REMARK 3 S21: 0.2466 S22: 0.1298 S23: 0.1797 REMARK 3 S31: 0.1129 S32: -0.0094 S33: -0.0269 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 738 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7090 -20.9430 28.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.2874 REMARK 3 T33: 0.3312 T12: -0.0492 REMARK 3 T13: 0.0342 T23: -0.1384 REMARK 3 L TENSOR REMARK 3 L11: 2.5397 L22: 1.2878 REMARK 3 L33: 2.9123 L12: -0.1808 REMARK 3 L13: -0.0099 L23: -0.6693 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: 0.4307 S13: -0.3000 REMARK 3 S21: -0.0594 S22: 0.1370 S23: -0.2586 REMARK 3 S31: 0.0710 S32: 0.2490 S33: 0.0302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3NCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APPLY 7% (W/V) PEG 350 MONOMETHYL REMARK 280 ETHER (MME), 175 MM CACL2, AND 100 MM NACACODYLATE (PH 6.5) TO REMARK 280 CRYSTAL Y567A/S565G: P/T:DCTP TERNARY COMPLEX AND THEN SOAK DTTP REMARK 280 INTO THE CRYSTAL TO REPLACE DCTP IN THE TERNARY COMPLEX, MICRO- REMARK 280 BATCH VAPOR-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.52600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.99950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.52600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.99950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 507 O HOH A 933 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA P 114 O3' DOC P 115 P -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA T 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG T 5 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DA T 8 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC T 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG T 12 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC T 15 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG T 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG P 103 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC P 104 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG P 105 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG P 105 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DC P 108 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC P 111 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA P 114 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 44 -87.89 96.80 REMARK 500 THR A 47 107.42 -169.29 REMARK 500 ASN A 98 39.45 -85.57 REMARK 500 ASP A 121 38.09 -98.10 REMARK 500 ALA A 135 139.88 -171.05 REMARK 500 PHE A 221 -65.05 -123.22 REMARK 500 ASN A 255 -157.70 -133.40 REMARK 500 ASN A 316 67.50 -151.94 REMARK 500 SER A 414 65.55 32.85 REMARK 500 SER A 414 67.07 31.06 REMARK 500 ASN A 424 46.75 72.94 REMARK 500 PRO A 458 0.31 -60.90 REMARK 500 LYS A 531 -4.89 -58.85 REMARK 500 THR A 622 -66.59 65.65 REMARK 500 GLU A 686 -76.74 -107.86 REMARK 500 GLU A 755 -37.99 -132.74 REMARK 500 SER A 896 -159.69 -99.82 REMARK 500 ASP A 899 -38.73 -172.10 REMARK 500 MET A 900 81.90 -66.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 907 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE2 REMARK 620 2 GLU A 116 OE1 45.8 REMARK 620 3 HOH A 925 O 66.5 112.3 REMARK 620 4 HOH A 926 O 64.6 81.7 70.2 REMARK 620 5 HOH A 927 O 149.2 150.8 90.2 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 906 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 623 OD2 73.8 REMARK 620 3 TTP A 904 O2A 75.9 80.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 908 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 411 OD1 50.5 REMARK 620 3 LEU A 412 O 102.4 83.6 REMARK 620 4 ASP A 623 OD1 77.3 123.3 88.2 REMARK 620 5 TTP A 904 O1G 115.2 77.4 107.6 156.0 REMARK 620 6 TTP A 904 O2B 158.7 150.7 85.6 83.3 80.1 REMARK 620 7 TTP A 904 O2A 83.7 115.0 158.7 73.1 87.6 82.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 909 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD1 REMARK 620 2 TTP A 904 O1G 82.6 REMARK 620 3 TTP A 904 O2G 113.6 53.0 REMARK 620 4 HOH A1023 O 87.5 144.9 102.3 REMARK 620 5 HOH A1048 O 81.6 62.0 108.5 149.2 REMARK 620 6 HOH A1176 O 82.5 149.0 157.2 60.9 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 505 O REMARK 620 2 ASN A 507 OD1 96.1 REMARK 620 3 LYS A 531 O 146.9 77.4 REMARK 620 4 HOH A 933 O 78.0 53.1 72.3 REMARK 620 5 HOH A1020 O 76.4 127.6 82.1 74.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 910 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 660 OE1 REMARK 620 2 ASP A 684 OD1 90.9 REMARK 620 3 HOH A 921 O 169.0 83.2 REMARK 620 4 HOH A1040 O 98.1 166.6 86.3 REMARK 620 5 HOH A1186 O 93.5 101.0 78.7 68.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 910 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IG9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA REMARK 900 POLYMERASE REMARK 900 RELATED ID: 3NCI RELATED DB: PDB REMARK 900 RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE DG AT 1.8 REMARK 900 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3LZJ RELATED DB: PDB REMARK 900 RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8-OXOGUANINE REMARK 900 RELATED ID: 3NGI RELATED DB: PDB REMARK 900 RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG REMARK 900 RELATED ID: 3NDK RELATED DB: PDB REMARK 900 RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG REMARK 900 RELATED ID: 3NE6 RELATED DB: PDB REMARK 900 RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DCTP REMARK 900 OPPOSITE DG DBREF 3NHG A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 3NHG T 1 18 PDB 3NHG 3NHG 1 18 DBREF 3NHG P 103 115 PDB 3NHG 3NHG 103 115 SEQADV 3NHG ALA A 222 UNP Q38087 ASP 222 ENGINEERED MUTATION SEQADV 3NHG ALA A 327 UNP Q38087 ASP 327 ENGINEERED MUTATION SEQADV 3NHG GLY A 565 UNP Q38087 SER 565 ENGINEERED MUTATION SEQADV 3NHG ALA A 567 UNP Q38087 TYR 567 ENGINEERED MUTATION SEQRES 1 A 903 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 903 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 903 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 903 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 903 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 903 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 903 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 903 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 903 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 903 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 903 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 903 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 903 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 903 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 903 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 903 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 903 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 903 ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 903 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 903 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 903 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 903 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 903 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 903 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 903 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 903 ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 903 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 903 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 903 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 903 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 903 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 903 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER LEU TYR SEQRES 33 A 903 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 903 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 903 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 903 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 903 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 903 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 903 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 903 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 903 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 903 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 903 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 903 LYS LEU LEU ILE ASN GLY LEU ALA GLY ALA LEU GLY ASN SEQRES 45 A 903 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 903 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 903 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 903 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 903 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 903 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 903 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 903 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 903 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 903 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 903 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 903 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 903 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 903 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 903 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 903 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 903 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 903 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 903 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 903 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 903 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 903 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 903 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 903 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 903 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 903 PHE ASP MET PHE ASP PHE SEQRES 1 T 18 DT DC DA DG DG DT DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 13 DG DC DG DG DA DC DT DG DC DT DT DA DOC MODRES 3NHG DOC P 115 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 115 18 HET TTP A 904 29 HET CA A 905 1 HET CA A 906 1 HET CA A 907 1 HET CA A 908 1 HET CA A 909 1 HET CA A 910 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 TTP C10 H17 N2 O14 P3 FORMUL 5 CA 6(CA 2+) FORMUL 11 HOH *313(H2 O) HELIX 1 1 ASN A 64 GLY A 79 1 16 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 ASP A 104 ILE A 108 5 5 HELIX 4 4 SER A 163 LYS A 169 1 7 HELIX 5 5 PRO A 179 ASP A 184 1 6 HELIX 6 6 ASN A 193 LYS A 208 1 16 HELIX 7 7 PHE A 221 GLY A 235 1 15 HELIX 8 8 GLY A 235 LYS A 240 1 6 HELIX 9 9 ARG A 241 SER A 243 5 3 HELIX 10 10 ASP A 272 SER A 281 1 10 HELIX 11 11 SER A 289 ASN A 299 1 11 HELIX 12 12 PRO A 308 SER A 310 5 3 HELIX 13 13 LYS A 311 GLN A 339 1 29 HELIX 14 14 GLN A 339 LYS A 352 1 14 HELIX 15 15 GLN A 354 PHE A 359 5 6 HELIX 16 16 SER A 360 GLU A 375 1 16 HELIX 17 17 SER A 414 ASN A 424 1 11 HELIX 18 18 PRO A 438 ASN A 444 1 7 HELIX 19 19 GLY A 469 LEU A 503 1 35 HELIX 20 20 SER A 523 LYS A 531 1 9 HELIX 21 21 SER A 534 LEU A 570 1 37 HELIX 22 22 ASP A 579 CYS A 609 1 31 HELIX 23 23 ALA A 629 GLY A 637 1 9 HELIX 24 24 GLU A 638 PHE A 641 5 4 HELIX 25 25 ASP A 643 ARG A 658 1 16 HELIX 26 26 ARG A 658 ASN A 675 1 18 HELIX 27 27 LEU A 730 LYS A 734 5 5 HELIX 28 28 PRO A 738 GLU A 755 1 18 HELIX 29 29 GLY A 756 PHE A 771 1 16 HELIX 30 30 ARG A 772 LEU A 774 5 3 HELIX 31 31 ASN A 775 ALA A 780 5 6 HELIX 32 32 ASN A 787 TYR A 791 1 5 HELIX 33 33 PRO A 802 ILE A 815 1 14 HELIX 34 34 ILE A 858 MET A 866 1 9 HELIX 35 35 ASP A 867 PHE A 876 1 10 HELIX 36 36 PHE A 876 ALA A 887 1 12 SHEET 1 A 3 PHE A 4 ILE A 11 0 SHEET 2 A 3 SER A 14 ILE A 20 -1 O ILE A 20 N PHE A 4 SHEET 3 A 3 GLU A 26 VAL A 31 -1 O VAL A 31 N ILE A 15 SHEET 1 B 4 SER A 36 HIS A 40 0 SHEET 2 B 4 PRO A 56 LEU A 61 -1 O LYS A 60 N LEU A 37 SHEET 3 B 4 TYR A 49 ASP A 51 -1 N TYR A 49 O CYS A 57 SHEET 4 B 4 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 C 6 ILE A 186 PHE A 191 0 SHEET 2 C 6 ARG A 145 LEU A 151 1 N PHE A 146 O ILE A 187 SHEET 3 C 6 ILE A 133 ASP A 140 -1 N ILE A 136 O PHE A 149 SHEET 4 C 6 VAL A 110 VAL A 117 -1 N GLU A 116 O ALA A 135 SHEET 5 C 6 ILE A 212 THR A 214 1 O ILE A 212 N ALA A 111 SHEET 6 C 6 SER A 269 VAL A 270 1 O SER A 269 N LEU A 213 SHEET 1 D 2 ASN A 153 SER A 154 0 SHEET 2 D 2 GLY A 157 ASN A 158 -1 O GLY A 157 N SER A 154 SHEET 1 E 2 THR A 248 GLU A 254 0 SHEET 2 E 2 SER A 259 LEU A 265 -1 O ILE A 262 N LYS A 251 SHEET 1 F 7 ASN A 402 ARG A 403 0 SHEET 2 F 7 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 F 7 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 F 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 F 7 VAL A 407 LEU A 412 -1 N VAL A 407 O ALA A 689 SHEET 6 F 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 F 7 VAL A 617 ASP A 621 -1 N TYR A 619 O TYR A 626 SHEET 1 G 4 ASN A 402 ARG A 403 0 SHEET 2 G 4 GLY A 700 GLY A 704 -1 O TRP A 702 N ASN A 402 SHEET 3 G 4 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 G 4 THR A 718 MET A 728 -1 O LYS A 726 N LEU A 710 SHEET 1 H 3 ILE A 430 THR A 433 0 SHEET 2 H 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 H 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 I 3 SER A 781 SER A 784 0 SHEET 2 I 3 LYS A 829 PRO A 834 -1 O VAL A 830 N SER A 783 SHEET 3 I 3 CYS A 845 PRO A 849 -1 O TRP A 848 N TYR A 831 SHEET 1 J 2 ASP A 792 VAL A 793 0 SHEET 2 J 2 PHE A 796 PRO A 797 -1 O PHE A 796 N VAL A 793 LINK O3' DA P 114 P DOC P 115 1555 1555 1.50 LINK OE2 GLU A 116 CA CA A 907 1555 1555 2.77 LINK OE1 GLU A 116 CA CA A 907 1555 1555 2.88 LINK OD2 ASP A 411 CA CA A 906 1555 1555 2.78 LINK OD2 ASP A 411 CA CA A 908 1555 1555 2.36 LINK OD1 ASP A 411 CA CA A 908 1555 1555 2.70 LINK OD1 ASP A 411 CA CA A 909 1555 1555 2.51 LINK O LEU A 412 CA CA A 908 1555 1555 2.29 LINK O ASN A 505 CA CA A 905 1555 1555 2.47 LINK OD1 ASN A 507 CA CA A 905 1555 1555 2.58 LINK O LYS A 531 CA CA A 905 1555 1555 2.43 LINK OD2 ASP A 623 CA CA A 906 1555 1555 2.54 LINK OD1 ASP A 623 CA CA A 908 1555 1555 2.17 LINK OE1 GLU A 660 CA CA A 910 1555 1555 3.07 LINK OD1 ASP A 684 CA CA A 910 1555 1555 2.13 LINK O2A TTP A 904 CA CA A 906 1555 1555 2.54 LINK O1G TTP A 904 CA CA A 908 1555 1555 2.27 LINK O2B TTP A 904 CA CA A 908 1555 1555 2.34 LINK O2A TTP A 904 CA CA A 908 1555 1555 2.55 LINK O1G TTP A 904 CA CA A 909 1555 1555 2.22 LINK O2G TTP A 904 CA CA A 909 1555 1555 3.06 LINK CA CA A 905 O HOH A 933 1555 1555 2.23 LINK CA CA A 905 O HOH A1020 1555 1555 2.33 LINK CA CA A 907 O HOH A 925 1555 1555 2.36 LINK CA CA A 907 O HOH A 926 1555 1555 2.50 LINK CA CA A 907 O HOH A 927 1555 1555 2.30 LINK CA CA A 909 O HOH A1023 1555 1555 3.10 LINK CA CA A 909 O HOH A1048 1555 1555 2.73 LINK CA CA A 909 O HOH A1176 1555 1555 2.47 LINK CA CA A 910 O HOH A 921 1555 1555 2.29 LINK CA CA A 910 O HOH A1040 1555 1555 2.42 LINK CA CA A 910 O HOH A1186 1555 1555 2.89 CISPEP 1 SER A 44 GLN A 45 0 10.56 CISPEP 2 ALA A 46 THR A 47 0 -16.51 CISPEP 3 PHE A 901 ASP A 902 0 0.56 SITE 1 AC1 18 ASP A 411 LEU A 412 SER A 414 LEU A 415 SITE 2 AC1 18 TYR A 416 ARG A 482 LYS A 560 ASN A 564 SITE 3 AC1 18 THR A 622 ASP A 623 CA A 906 CA A 908 SITE 4 AC1 18 CA A 909 HOH A 991 HOH A1048 DOC P 115 SITE 5 AC1 18 DG T 4 DG T 5 SITE 1 AC2 5 ASN A 505 ASN A 507 LYS A 531 HOH A 933 SITE 2 AC2 5 HOH A1020 SITE 1 AC3 3 ASP A 411 ASP A 623 TTP A 904 SITE 1 AC4 4 GLU A 116 HOH A 925 HOH A 926 HOH A 927 SITE 1 AC5 5 ASP A 411 LEU A 412 ASP A 623 TTP A 904 SITE 2 AC5 5 CA A 909 SITE 1 AC6 5 ASP A 411 TTP A 904 CA A 908 HOH A1048 SITE 2 AC6 5 HOH A1176 SITE 1 AC7 5 GLU A 660 ASP A 684 HOH A 921 HOH A1040 SITE 2 AC7 5 HOH A1186 CRYST1 75.052 119.999 130.382 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007670 0.00000