PDB Short entry for 3NMV HEADER PROTEIN BINDING 22-JUN-10 3NMV TITLE CRYSTAL STRUCTURE OF PYRABACTIN-BOUND ABSCISIC ACID RECEPTOR PYL2 TITLE 2 MUTANT A93F IN COMPLEX WITH TYPE 2C PROTEIN PHOSPHATASE ABI2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYR1-LIKE PROTEIN 2, REGULATORY COMPONENTS OF ABA RECEPTOR COMPND 5 14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN PHOSPHATASE 2C 77; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: ATPP2C77, PROTEIN PHOSPHATASE 2C ABI2, PP2C ABI2, PROTEIN COMPND 12 ABSCISIC ACID-INSENSITIVE 2; COMPND 13 EC: 3.1.3.16; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PYL2, RCAR14, AT2G26040, T19L18.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 13 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 14 ORGANISM_TAXID: 3702; SOURCE 15 GENE: ABI2, AT5G57050, MHM17.19; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS PYL2, PYRABACTIN, ABSCISIC ACID RECEPTOR, HELIX-GRIP FOLD, TYPE 2C KEYWDS 2 PROTEIN PHOSPHATASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,K.MELCHER,L.-M.NG,F.-F.SOON,Y.XU,K.M.SUINO-POWELL,A.KOVACH, AUTHOR 2 J.LI,E.-L.YONG,H.E.XU REVDAT 4 06-SEP-23 3NMV 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3NMV 1 REMARK REVDAT 2 15-SEP-10 3NMV 1 JRNL REVDAT 1 25-AUG-10 3NMV 0 JRNL AUTH K.MELCHER,Y.XU,L.M.NG,X.E.ZHOU,F.F.SOON,V.CHINNUSAMY, JRNL AUTH 2 K.M.SUINO-POWELL,A.KOVACH,F.S.THAM,S.R.CUTLER,J.LI,E.L.YONG, JRNL AUTH 3 J.K.ZHU,H.E.XU JRNL TITL IDENTIFICATION AND MECHANISM OF ABA RECEPTOR ANTAGONISM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1102 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20729862 JRNL DOI 10.1038/NSMB.1887 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61000 REMARK 3 B22 (A**2) : 5.53000 REMARK 3 B33 (A**2) : -2.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3670 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2514 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4971 ; 1.950 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6113 ; 1.070 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 5.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.071 ;23.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;16.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4055 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 745 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2269 ; 2.080 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 917 ; 0.753 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3685 ; 3.497 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 4.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1286 ; 7.111 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6184 ; 2.559 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 174 ;19.215 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6110 ;11.758 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% PEG 8000, 10% SUCROSE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.06450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.25250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.79350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.25250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.06450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.79350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ASP A 189 REMARK 465 GLY B 100 REMARK 465 SER B 101 REMARK 465 ARG B 102 REMARK 465 SER B 103 REMARK 465 LEU B 104 REMARK 465 PHE B 105 REMARK 465 GLU B 106 REMARK 465 PHE B 107 REMARK 465 LYS B 108 REMARK 465 VAL B 138 REMARK 465 SER B 139 REMARK 465 SER B 140 REMARK 465 SER B 141 REMARK 465 SER B 142 REMARK 465 LEU B 143 REMARK 465 LEU B 144 REMARK 465 ASP B 145 REMARK 465 GLY B 146 REMARK 465 ARG B 147 REMARK 465 VAL B 148 REMARK 465 THR B 149 REMARK 465 ALA B 364 REMARK 465 MET B 365 REMARK 465 ALA B 366 REMARK 465 GLY B 367 REMARK 465 GLU B 368 REMARK 465 ALA B 369 REMARK 465 LEU B 370 REMARK 465 LEU B 371 REMARK 465 PRO B 372 REMARK 465 ALA B 373 REMARK 465 GLU B 374 REMARK 465 LYS B 375 REMARK 465 ARG B 376 REMARK 465 GLY B 377 REMARK 465 ARG B 415 REMARK 465 LYS B 416 REMARK 465 PHE B 417 REMARK 465 LYS B 418 REMARK 465 SER B 419 REMARK 465 LYS B 420 REMARK 465 SER B 421 REMARK 465 LEU B 422 REMARK 465 ASN B 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 120 O HOH B 17 2.12 REMARK 500 N ARG B 121 O HOH B 95 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE A 28 NZ LYS B 260 2555 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 179 CB VAL A 179 CG2 0.151 REMARK 500 VAL B 235 CB VAL B 235 CG2 0.130 REMARK 500 ARG B 279 CG ARG B 279 CD 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 53 CB - CG - CD1 ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLY B 198 C - N - CA ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP B 251 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 308 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 308 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 117.58 174.35 REMARK 500 TYR A 63 -1.17 -146.01 REMARK 500 ARG A 108 62.22 60.60 REMARK 500 LEU A 121 71.02 -119.35 REMARK 500 SER A 183 -1.10 -144.08 REMARK 500 LYS B 260 -37.03 -144.07 REMARK 500 VAL B 298 -63.01 -94.90 REMARK 500 ASP B 317 105.59 -51.20 REMARK 500 LYS B 362 37.32 -92.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 424 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 1 O REMARK 620 2 ASP B 165 OD2 68.5 REMARK 620 3 ASP B 337 OD1 60.9 74.8 REMARK 620 4 ASP B 402 OD2 71.5 138.8 77.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 426 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 11 O REMARK 620 2 HOH B 75 O 134.6 REMARK 620 3 GLU B 126 OE1 117.6 87.7 REMARK 620 4 HOH B 428 O 82.5 113.6 126.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 425 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 165 OD2 REMARK 620 2 ASP B 251 OD1 99.4 REMARK 620 3 SER B 252 OG 116.7 107.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 426 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NMH RELATED DB: PDB REMARK 900 PYRABACTIN BOUND PYL2 REMARK 900 RELATED ID: 3NMN RELATED DB: PDB REMARK 900 RELATED ID: 3NMP RELATED DB: PDB REMARK 900 PYRABACTIN BOUND PYL2 A93F REMARK 900 RELATED ID: 3NMT RELATED DB: PDB REMARK 900 PYRABACTIN BOUND PYL2 A93F IN COMPLEX WITH HAB1 DBREF 3NMV A 14 189 UNP O80992 PYL2_ARATH 14 189 DBREF 3NMV B 101 423 UNP O04719 P2C77_ARATH 101 423 SEQADV 3NMV GLY A 12 UNP O80992 EXPRESSION TAG SEQADV 3NMV SER A 13 UNP O80992 EXPRESSION TAG SEQADV 3NMV PHE A 93 UNP O80992 ALA 93 ENGINEERED MUTATION SEQADV 3NMV GLY B 100 UNP O04719 EXPRESSION TAG SEQRES 1 A 178 GLY SER GLU GLN LYS THR LEU GLU PRO VAL ILE LYS THR SEQRES 2 A 178 TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SER SEQRES 3 A 178 LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL VAL SEQRES 4 A 178 TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG TYR SEQRES 5 A 178 LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY ASP SEQRES 6 A 178 GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SER SEQRES 7 A 178 GLY LEU PRO PHE SER THR SER THR GLU ARG LEU GLU PHE SEQRES 8 A 178 VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL VAL SEQRES 9 A 178 GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL THR SEQRES 10 A 178 SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS VAL SEQRES 11 A 178 TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE PRO SEQRES 12 A 178 GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL ASP SEQRES 13 A 178 THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL ALA SEQRES 14 A 178 ALA THR SER ALA PRO MET HIS ASP ASP SEQRES 1 B 324 GLY SER ARG SER LEU PHE GLU PHE LYS CYS VAL PRO LEU SEQRES 2 B 324 TYR GLY VAL THR SER ILE CYS GLY ARG ARG PRO GLU MET SEQRES 3 B 324 GLU ASP SER VAL SER THR ILE PRO ARG PHE LEU GLN VAL SEQRES 4 B 324 SER SER SER SER LEU LEU ASP GLY ARG VAL THR ASN GLY SEQRES 5 B 324 PHE ASN PRO HIS LEU SER ALA HIS PHE PHE GLY VAL TYR SEQRES 6 B 324 ASP GLY HIS GLY GLY SER GLN VAL ALA ASN TYR CYS ARG SEQRES 7 B 324 GLU ARG MET HIS LEU ALA LEU THR GLU GLU ILE VAL LYS SEQRES 8 B 324 GLU LYS PRO GLU PHE CYS ASP GLY ASP THR TRP GLN GLU SEQRES 9 B 324 LYS TRP LYS LYS ALA LEU PHE ASN SER PHE MET ARG VAL SEQRES 10 B 324 ASP SER GLU ILE GLU THR VAL ALA HIS ALA PRO GLU THR SEQRES 11 B 324 VAL GLY SER THR SER VAL VAL ALA VAL VAL PHE PRO THR SEQRES 12 B 324 HIS ILE PHE VAL ALA ASN CYS GLY ASP SER ARG ALA VAL SEQRES 13 B 324 LEU CYS ARG GLY LYS THR PRO LEU ALA LEU SER VAL ASP SEQRES 14 B 324 HIS LYS PRO ASP ARG ASP ASP GLU ALA ALA ARG ILE GLU SEQRES 15 B 324 ALA ALA GLY GLY LYS VAL ILE ARG TRP ASN GLY ALA ARG SEQRES 16 B 324 VAL PHE GLY VAL LEU ALA MET SER ARG SER ILE GLY ASP SEQRES 17 B 324 ARG TYR LEU LYS PRO SER VAL ILE PRO ASP PRO GLU VAL SEQRES 18 B 324 THR SER VAL ARG ARG VAL LYS GLU ASP ASP CYS LEU ILE SEQRES 19 B 324 LEU ALA SER ASP GLY LEU TRP ASP VAL MET THR ASN GLU SEQRES 20 B 324 GLU VAL CYS ASP LEU ALA ARG LYS ARG ILE LEU LEU TRP SEQRES 21 B 324 HIS LYS LYS ASN ALA MET ALA GLY GLU ALA LEU LEU PRO SEQRES 22 B 324 ALA GLU LYS ARG GLY GLU GLY LYS ASP PRO ALA ALA MET SEQRES 23 B 324 SER ALA ALA GLU TYR LEU SER LYS MET ALA LEU GLN LYS SEQRES 24 B 324 GLY SER LYS ASP ASN ILE SER VAL VAL VAL VAL ASP LEU SEQRES 25 B 324 LYS GLY ILE ARG LYS PHE LYS SER LYS SER LEU ASN HET PYV A 900 22 HET MG B 424 1 HET MG B 425 1 HET MG B 426 1 HETNAM PYV 4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE HETNAM MG MAGNESIUM ION HETSYN PYV PYRABACTIN FORMUL 3 PYV C16 H13 BR N2 O2 S FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *171(H2 O) HELIX 1 1 SER A 13 HIS A 26 1 14 HELIX 2 2 PRO A 46 ARG A 56 1 11 HELIX 3 3 ASN A 59 TYR A 63 5 5 HELIX 4 4 THR A 158 ALA A 184 1 27 HELIX 5 5 ASN B 153 ALA B 158 5 6 HELIX 6 6 SER B 170 LYS B 192 1 23 HELIX 7 7 PRO B 193 CYS B 196 5 4 HELIX 8 8 GLY B 198 VAL B 223 1 26 HELIX 9 9 ARG B 273 ALA B 283 1 11 HELIX 10 10 ARG B 308 LYS B 311 5 4 HELIX 11 11 SER B 336 ASP B 341 1 6 HELIX 12 12 THR B 344 LYS B 361 1 18 HELIX 13 13 ASP B 381 LYS B 398 1 18 SHEET 1 A 7 THR A 34 ILE A 43 0 SHEET 2 A 7 VAL A 141 ASP A 152 -1 O GLU A 147 N ILE A 39 SHEET 3 A 7 LYS A 125 LEU A 134 -1 N PHE A 133 O TYR A 142 SHEET 4 A 7 VAL A 109 GLY A 117 -1 N PHE A 112 O SER A 126 SHEET 5 A 7 THR A 95 ASP A 104 -1 N ARG A 99 O ARG A 113 SHEET 6 A 7 VAL A 82 VAL A 87 -1 N VAL A 85 O SER A 96 SHEET 7 A 7 VAL A 67 SER A 74 -1 N ARG A 71 O GLU A 84 SHEET 1 B 5 TYR B 113 ILE B 118 0 SHEET 2 B 5 ILE B 404 ASP B 410 -1 O VAL B 408 N GLY B 114 SHEET 3 B 5 ASP B 329 ALA B 335 -1 N LEU B 334 O VAL B 407 SHEET 4 B 5 ARG B 253 ARG B 258 -1 N VAL B 255 O ILE B 333 SHEET 5 B 5 THR B 261 ALA B 264 -1 O LEU B 263 N LEU B 256 SHEET 1 C 4 ASP B 127 ILE B 132 0 SHEET 2 C 4 HIS B 159 HIS B 167 -1 O TYR B 164 N SER B 128 SHEET 3 C 4 GLY B 231 SER B 232 -1 O GLY B 231 N HIS B 167 SHEET 4 C 4 ILE B 305 GLY B 306 -1 O ILE B 305 N SER B 232 SHEET 1 D 5 ASP B 127 ILE B 132 0 SHEET 2 D 5 HIS B 159 HIS B 167 -1 O TYR B 164 N SER B 128 SHEET 3 D 5 SER B 234 VAL B 239 -1 O ALA B 237 N PHE B 161 SHEET 4 D 5 HIS B 243 CYS B 249 -1 O ALA B 247 N VAL B 236 SHEET 5 D 5 GLU B 319 ARG B 324 -1 O THR B 321 N VAL B 246 SHEET 1 E 2 VAL B 287 ARG B 289 0 SHEET 2 E 2 ALA B 293 VAL B 295 -1 O ARG B 294 N ILE B 288 LINK O HOH B 1 MG MG B 424 1555 1555 2.23 LINK O HOH B 11 MG MG B 426 1555 1555 2.57 LINK O HOH B 75 MG MG B 426 1555 1555 2.88 LINK OE1 GLU B 126 MG MG B 426 1555 1555 2.54 LINK OD2 ASP B 165 MG MG B 424 1555 1555 2.31 LINK OD2 ASP B 165 MG MG B 425 1555 1555 2.75 LINK OD1 ASP B 251 MG MG B 425 1555 1555 2.99 LINK OG SER B 252 MG MG B 425 1555 1555 2.66 LINK OD1 ASP B 337 MG MG B 424 1555 1555 2.43 LINK OD2 ASP B 402 MG MG B 424 1555 1555 2.39 LINK MG MG B 426 O HOH B 428 1555 1555 2.95 CISPEP 1 LYS B 311 PRO B 312 0 -1.28 SITE 1 AC1 12 HOH A 7 LYS A 64 PHE A 93 SER A 96 SITE 2 AC1 12 GLU A 98 PHE A 112 TYR A 124 PHE A 165 SITE 3 AC1 12 VAL A 169 ASN A 173 HOH A 217 HOH A 267 SITE 1 AC2 6 HOH B 1 ASP B 127 ASP B 165 ASP B 337 SITE 2 AC2 6 ASP B 402 ASN B 403 SITE 1 AC3 5 ASP B 165 ASP B 251 SER B 252 SER B 336 SITE 2 AC3 5 ASP B 337 SITE 1 AC4 5 HOH B 11 HOH B 75 GLU B 126 GLY B 166 SITE 2 AC4 5 HOH B 428 CRYST1 62.129 97.587 134.505 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007435 0.00000