PDB Short entry for 3NQJ HEADER DNA BINDING PROTEIN 29-JUN-10 3NQJ TITLE CRYSTAL STRUCTURE OF (CENP-A/H4)2 HETEROTETRAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3-LIKE CENTROMERIC PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-140; COMPND 5 SYNONYM: CENTROMERE PROTEIN A, CENP-A, CENTROMERE AUTOANTIGEN A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 21-103; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CENPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HIST1H4A, H4/A, H4FA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA HELIX, HISTONE FOLD, CENTROMERE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SEKULIC,B.E.BLACK REVDAT 4 06-SEP-23 3NQJ 1 REMARK SEQADV REVDAT 3 13-OCT-10 3NQJ 1 JRNL REVDAT 2 08-SEP-10 3NQJ 1 JRNL REVDAT 1 25-AUG-10 3NQJ 0 JRNL AUTH N.SEKULIC,E.A.BASSETT,D.J.ROGERS,B.E.BLACK JRNL TITL THE STRUCTURE OF (CENP-A-H4)(2) REVEALS PHYSICAL FEATURES JRNL TITL 2 THAT MARK CENTROMERES. JRNL REF NATURE V. 467 347 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20739937 JRNL DOI 10.1038/NATURE09323 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.63000 REMARK 3 B22 (A**2) : -1.63000 REMARK 3 B33 (A**2) : 2.44000 REMARK 3 B12 (A**2) : -0.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1204 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1626 ; 1.329 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 145 ; 5.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;28.232 ;20.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ;14.489 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 872 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 721 ; 0.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 1.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 483 ; 2.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 468 ; 3.825 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1086 15.5363 9.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.2606 REMARK 3 T33: 0.4620 T12: -0.1632 REMARK 3 T13: -0.0388 T23: 0.0947 REMARK 3 L TENSOR REMARK 3 L11: 3.9194 L22: 5.4504 REMARK 3 L33: 4.9519 L12: -0.7914 REMARK 3 L13: -4.2889 L23: 0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.2719 S12: -0.2361 S13: -0.4127 REMARK 3 S21: 0.2232 S22: 0.0253 S23: 0.0607 REMARK 3 S31: 0.4334 S32: 0.1302 S33: 0.2465 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4669 17.4676 -3.0661 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1947 REMARK 3 T33: 0.1831 T12: 0.0087 REMARK 3 T13: 0.0371 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 9.1871 L22: 1.6449 REMARK 3 L33: 6.5841 L12: 0.8002 REMARK 3 L13: -6.2388 L23: -0.8837 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: 0.5343 S13: -0.3518 REMARK 3 S21: 0.1962 S22: -0.0483 S23: 0.0632 REMARK 3 S31: 0.4121 S32: -0.3178 S33: 0.1681 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5271 11.6430 7.4629 REMARK 3 T TENSOR REMARK 3 T11: 0.5320 T22: 0.1679 REMARK 3 T33: 0.2294 T12: 0.1338 REMARK 3 T13: 0.0877 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 14.2305 L22: 8.2168 REMARK 3 L33: 10.3339 L12: 2.9612 REMARK 3 L13: -11.0494 L23: 1.3474 REMARK 3 S TENSOR REMARK 3 S11: -0.6536 S12: 0.1307 S13: -1.0842 REMARK 3 S21: 0.2740 S22: -0.1744 S23: -0.2504 REMARK 3 S31: 0.7513 S32: -0.1853 S33: 0.8280 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4029 25.8134 14.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1612 REMARK 3 T33: 0.1231 T12: -0.0419 REMARK 3 T13: 0.0210 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 5.6611 L22: 7.0741 REMARK 3 L33: 2.7596 L12: -5.3601 REMARK 3 L13: -2.3258 L23: 4.0992 REMARK 3 S TENSOR REMARK 3 S11: -0.2095 S12: -0.3939 S13: -0.1120 REMARK 3 S21: 0.3878 S22: 0.1672 S23: 0.0785 REMARK 3 S31: 0.2585 S32: -0.0275 S33: 0.0424 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1774 40.8242 11.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1350 REMARK 3 T33: 0.1221 T12: -0.0172 REMARK 3 T13: -0.0083 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.7999 L22: 4.0611 REMARK 3 L33: 3.8816 L12: 1.1202 REMARK 3 L13: -0.8215 L23: 0.8953 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: -0.1471 S13: 0.1265 REMARK 3 S21: -0.0676 S22: 0.0020 S23: -0.0867 REMARK 3 S31: -0.0552 S32: -0.1463 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8476 20.7323 3.6178 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.1285 REMARK 3 T33: 0.2264 T12: -0.0358 REMARK 3 T13: 0.0104 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 17.3932 L22: 10.0294 REMARK 3 L33: 11.2098 L12: -4.6950 REMARK 3 L13: -11.7923 L23: 2.3012 REMARK 3 S TENSOR REMARK 3 S11: 0.3143 S12: 0.7447 S13: -0.0422 REMARK 3 S21: -0.4691 S22: -0.2931 S23: -0.3032 REMARK 3 S31: 0.6470 S32: -0.5274 S33: -0.0212 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1955 27.3387 16.2331 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.2447 REMARK 3 T33: 0.1736 T12: -0.0983 REMARK 3 T13: 0.0529 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.7507 L22: 5.9434 REMARK 3 L33: 6.8332 L12: -1.4091 REMARK 3 L13: 2.3160 L23: 2.3878 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.2959 S13: -0.1072 REMARK 3 S21: 0.5238 S22: -0.1708 S23: 0.4664 REMARK 3 S31: 0.3809 S32: -0.7180 S33: 0.2162 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5675 33.9889 9.2773 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.2312 REMARK 3 T33: 0.1485 T12: -0.0323 REMARK 3 T13: -0.0120 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 4.0871 L22: 8.6820 REMARK 3 L33: 11.8255 L12: 1.3220 REMARK 3 L13: 4.6773 L23: -1.5159 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0938 S13: -0.1164 REMARK 3 S21: 0.2840 S22: -0.0962 S23: 0.4125 REMARK 3 S31: -0.2120 S32: -0.7287 S33: 0.1040 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2423 26.8150 4.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1341 REMARK 3 T33: 0.1268 T12: -0.0338 REMARK 3 T13: 0.0229 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 13.0179 L22: 2.2762 REMARK 3 L33: 0.8560 L12: -4.6802 REMARK 3 L13: 0.4674 L23: -0.3162 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.1909 S13: 0.4262 REMARK 3 S21: -0.0984 S22: -0.0796 S23: -0.0461 REMARK 3 S31: 0.1424 S32: 0.0205 S33: 0.1005 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7430 15.7834 5.1418 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.3582 REMARK 3 T33: 0.2644 T12: 0.2095 REMARK 3 T13: 0.0504 T23: 0.1201 REMARK 3 L TENSOR REMARK 3 L11: 12.7015 L22: 9.8344 REMARK 3 L33: 8.3169 L12: -2.3414 REMARK 3 L13: -8.1754 L23: -3.8295 REMARK 3 S TENSOR REMARK 3 S11: -0.3743 S12: -0.8291 S13: -0.1659 REMARK 3 S21: -0.1370 S22: -0.2495 S23: -0.6872 REMARK 3 S31: 0.4505 S32: 0.8551 S33: 0.6237 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8644 22.2983 12.6272 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.2824 REMARK 3 T33: 0.0499 T12: 0.0773 REMARK 3 T13: -0.0153 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 10.6922 L22: 36.8109 REMARK 3 L33: 10.8630 L12: -3.3354 REMARK 3 L13: 0.5084 L23: 5.2283 REMARK 3 S TENSOR REMARK 3 S11: -0.2169 S12: -0.6478 S13: 0.2801 REMARK 3 S21: 0.3350 S22: -0.0884 S23: -0.9963 REMARK 3 S31: 0.2334 S32: 1.0618 S33: 0.3052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 54.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 8.220 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : 0.53500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 0.085 M REMARK 280 SODIUM CACODYLATE (PH 6.5), 25.5% PEG-8000, 15% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.34133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.17067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.75600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.58533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 132.92667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.34133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.17067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.58533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.75600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 132.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 31.43450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 54.44615 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.58533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 GLY A 138 REMARK 465 LEU A 139 REMARK 465 GLY A 140 REMARK 465 MET B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 GLN B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 THR B 96 REMARK 465 LEU B 97 REMARK 465 TYR B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 GLY B 101 REMARK 465 GLY B 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 59 CG SD CE REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 MET B 84 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 25 135.15 168.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NQU RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 MET AT N-TERMINUS WAS INTRODUCED IN SEQUENCE BECAUSE IT IS NEEDED REMARK 999 TO INITIATE TRANSCRIPTION DBREF 3NQJ A 60 140 UNP P49450 CENPA_HUMAN 60 140 DBREF 3NQJ B 20 102 UNP P62805 H4_HUMAN 21 103 SEQADV 3NQJ MET A 59 UNP P49450 INSERTION SEQADV 3NQJ MET B 19 UNP P62805 INSERTION SEQRES 1 A 82 MET LEU LEU ILE ARG LYS LEU PRO PHE SER ARG LEU ALA SEQRES 2 A 82 ARG GLU ILE CYS VAL LYS PHE THR ARG GLY VAL ASP PHE SEQRES 3 A 82 ASN TRP GLN ALA GLN ALA LEU LEU ALA LEU GLN GLU ALA SEQRES 4 A 82 ALA GLU ALA PHE LEU VAL HIS LEU PHE GLU ASP ALA TYR SEQRES 5 A 82 LEU LEU THR LEU HIS ALA GLY ARG VAL THR LEU PHE PRO SEQRES 6 A 82 LYS ASP VAL GLN LEU ALA ARG ARG ILE ARG GLY LEU GLU SEQRES 7 A 82 GLU GLY LEU GLY SEQRES 1 B 84 MET LYS VAL LEU ARG ASP ASN ILE GLN GLY ILE THR LYS SEQRES 2 B 84 PRO ALA ILE ARG ARG LEU ALA ARG ARG GLY GLY VAL LYS SEQRES 3 B 84 ARG ILE SER GLY LEU ILE TYR GLU GLU THR ARG GLY VAL SEQRES 4 B 84 LEU LYS VAL PHE LEU GLU ASN VAL ILE ARG ASP ALA VAL SEQRES 5 B 84 THR TYR THR GLU HIS ALA LYS ARG LYS THR VAL THR ALA SEQRES 6 B 84 MET ASP VAL VAL TYR ALA LEU LYS ARG GLN GLY ARG THR SEQRES 7 B 84 LEU TYR GLY PHE GLY GLY HET PO4 A 4 5 HET PO4 B 1 5 HET PO4 B 2 5 HET PO4 B 3 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *136(H2 O) HELIX 1 1 ARG A 63 ARG A 80 1 18 HELIX 2 2 GLN A 87 ALA A 116 1 30 HELIX 3 3 PHE A 122 GLY A 134 1 13 HELIX 4 4 ASN B 25 ILE B 29 5 5 HELIX 5 5 THR B 30 GLY B 41 1 12 HELIX 6 6 LEU B 49 ALA B 76 1 28 HELIX 7 7 THR B 82 LYS B 91 1 10 SHEET 1 A 2 ASN A 85 TRP A 86 0 SHEET 2 A 2 THR B 80 VAL B 81 1 O VAL B 81 N ASN A 85 CISPEP 1 ASP B 24 ASN B 25 0 28.42 SITE 1 AC1 4 HOH A 14 ARG A 63 LYS A 64 HOH A 165 SITE 1 AC2 4 PRO B 32 ARG B 35 ARG B 36 ARG B 39 SITE 1 AC3 4 HOH A 144 PO4 B 3 LYS B 31 TYR B 51 SITE 1 AC4 4 PO4 B 2 LYS B 31 PRO B 32 ARG B 35 CRYST1 62.869 62.869 159.512 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015906 0.009183 0.000000 0.00000 SCALE2 0.000000 0.018367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006269 0.00000