PDB Short entry for 3NR8 HEADER HYDROLASE 30-JUN-10 3NR8 TITLE CRYSTAL STRUCTURE OF HUMAN SHIP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: PHOSPHATASE DOMAIN, UNP RESIDUES 419-732; COMPND 5 SYNONYM: SH2 DOMAIN-CONTAINING INOSITOL-5'-PHOSPHATASE 2, SH2 DOMAIN- COMPND 6 CONTAINING INOSITOL PHOSPHATASE 2, SHIP-2, INOSITOL POLYPHOSPHATE COMPND 7 PHOSPHATASE-LIKE PROTEIN 1, INPPL-1, PROTEIN 51C; COMPND 8 EC: 3.1.3.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPPL1, SHIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-MBP KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, PHOSPHATIDYLINOSITOL-3, 4, 5- KEYWDS 2 TRISPHOSPHATE 5-PHOSPHATASE 2, SHIP2, INPPL1, SHIP-2, KEYWDS 3 PHOSPHATIDYLINOSITOL, PHOSPHATASE, SIGNALLING, MAGNESIUM, STRUCTURAL KEYWDS 4 GENOMICS CONSORTIUM STOCKHOLM, MAGNESIUM BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.TRESAUGUES,M.WELIN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 T.KARLBERG,S.KOL,T.KOTENYOVA,E.KOUZNETSOVA,M.MOCHE,T.NYMAN, AUTHOR 4 C.PERSSON,H.SCHULER,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL,S.VAN DER AUTHOR 5 BERG,E.WAHLBERG,J.WEIGELT,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 6 (SGC) REVDAT 3 06-SEP-23 3NR8 1 REMARK SEQADV REVDAT 2 28-MAY-14 3NR8 1 JRNL VERSN REMARK REVDAT 1 25-AUG-10 3NR8 0 JRNL AUTH L.TRESAUGUES,C.SILVANDER,S.FLODIN,M.WELIN,T.NYMAN, JRNL AUTH 2 S.GRASLUND,M.HAMMARSTROM,H.BERGLUND,P.NORDLUND JRNL TITL STRUCTURAL BASIS FOR PHOSPHOINOSITIDE SUBSTRATE RECOGNITION, JRNL TITL 2 CATALYSIS, AND MEMBRANE INTERACTIONS IN HUMAN INOSITOL JRNL TITL 3 POLYPHOSPHATE 5-PHOSPHATASES JRNL REF STRUCTURE V. 22 744 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24704254 JRNL DOI 10.1016/J.STR.2014.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.448 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.389 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.322 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4914 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3330 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6670 ; 1.146 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8066 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;36.215 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;16.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 732 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5419 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1054 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2942 ; 0.245 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1196 ; 0.046 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4784 ; 0.471 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1972 ; 0.702 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1885 ; 1.201 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 1283 ; 0.150 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 B (A): 589 ; 0.240 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 B (A): 1723 ; 0.280 ; 5.000 REMARK 3 TIGHT THERMAL 1 B (A**2): 1283 ; 0.200 ; 0.500 REMARK 3 MEDIUM THERMAL 1 B (A**2): 589 ; 0.240 ; 2.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1723 ; 0.280 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 420 B 575 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3148 -4.6436 105.9959 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.5014 REMARK 3 T33: 0.1409 T12: -0.0129 REMARK 3 T13: 0.0096 T23: 0.1889 REMARK 3 L TENSOR REMARK 3 L11: 4.4680 L22: 3.0876 REMARK 3 L33: 2.5526 L12: -0.0493 REMARK 3 L13: 0.6012 L23: -0.4120 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.4163 S13: -0.4846 REMARK 3 S21: -0.0294 S22: 0.0242 S23: 0.2111 REMARK 3 S31: 0.3544 S32: -0.2581 S33: -0.0414 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 576 B 596 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1061 5.1519 112.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.3473 T22: 1.3828 REMARK 3 T33: 0.8590 T12: 0.0117 REMARK 3 T13: -0.1299 T23: 0.5617 REMARK 3 L TENSOR REMARK 3 L11: 28.0436 L22: 6.4819 REMARK 3 L33: 0.6769 L12: 12.5700 REMARK 3 L13: -3.4671 L23: -2.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.9411 S12: -1.9602 S13: -2.5140 REMARK 3 S21: 0.3555 S22: -1.5858 S23: -1.8170 REMARK 3 S31: -0.1064 S32: 0.6229 S33: 0.6448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 597 B 731 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3802 7.9636 95.2061 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.3643 REMARK 3 T33: 0.1132 T12: 0.0092 REMARK 3 T13: 0.0215 T23: 0.1405 REMARK 3 L TENSOR REMARK 3 L11: 3.3396 L22: 2.8499 REMARK 3 L33: 2.4943 L12: -0.1866 REMARK 3 L13: 0.7421 L23: -0.6214 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0646 S13: 0.1058 REMARK 3 S21: -0.1942 S22: 0.0771 S23: -0.0439 REMARK 3 S31: -0.0476 S32: -0.1693 S33: -0.1280 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 421 A 581 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2795 39.2256 66.7306 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.0381 REMARK 3 T33: 0.2802 T12: -0.0227 REMARK 3 T13: 0.0462 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 4.6805 L22: 4.5430 REMARK 3 L33: 3.3629 L12: -1.3562 REMARK 3 L13: 0.7399 L23: -1.6418 REMARK 3 S TENSOR REMARK 3 S11: -0.1801 S12: 0.0447 S13: 0.3100 REMARK 3 S21: -0.0917 S22: 0.3512 S23: 0.2340 REMARK 3 S31: -0.3426 S32: 0.0015 S33: -0.1711 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 582 A 591 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5280 47.6608 72.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.8286 T22: 0.8800 REMARK 3 T33: 0.9803 T12: 0.2974 REMARK 3 T13: -0.3114 T23: 0.5629 REMARK 3 L TENSOR REMARK 3 L11: 25.3347 L22: 28.0585 REMARK 3 L33: 3.1263 L12: -5.9143 REMARK 3 L13: 5.7295 L23: 5.6491 REMARK 3 S TENSOR REMARK 3 S11: 1.0220 S12: 0.8915 S13: -0.0599 REMARK 3 S21: -2.9693 S22: -1.0676 S23: -0.0105 REMARK 3 S31: -0.5185 S32: -0.0642 S33: 0.0456 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 594 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8887 28.2970 78.3432 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.0573 REMARK 3 T33: 0.2272 T12: 0.0187 REMARK 3 T13: 0.0749 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.1095 L22: 4.8663 REMARK 3 L33: 6.0096 L12: -1.2929 REMARK 3 L13: 1.2667 L23: -3.4546 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.4662 S13: -0.2686 REMARK 3 S21: 0.1086 S22: 0.2715 S23: 0.3275 REMARK 3 S31: -0.0618 S32: -0.2053 S33: -0.2010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : 0.15200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : 0.72000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1M CITRIC ACID PH 5, REMARK 280 2MM BIPHENYL 2,3',4,5',6-PENTAKISPHOSPHATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.58850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 417 REMARK 465 MET B 418 REMARK 465 ASP B 419 REMARK 465 GLU B 457 REMARK 465 VAL B 458 REMARK 465 THR B 459 REMARK 465 GLY B 533 REMARK 465 ILE B 534 REMARK 465 ALA B 535 REMARK 465 ASN B 536 REMARK 465 THR B 537 REMARK 465 LEU B 538 REMARK 465 GLY B 586 REMARK 465 ASP B 587 REMARK 465 ARG B 588 REMARK 465 GLN B 589 REMARK 465 GLN B 732 REMARK 465 SER A 417 REMARK 465 MET A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 PRO A 421 REMARK 465 GLY A 533 REMARK 465 ILE A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 THR A 537 REMARK 465 LEU A 538 REMARK 465 GLY A 539 REMARK 465 ASN A 540 REMARK 465 ALA A 592 REMARK 465 PHE A 593 REMARK 465 GLN A 676 REMARK 465 LYS A 677 REMARK 465 PRO A 678 REMARK 465 THR A 679 REMARK 465 GLY A 680 REMARK 465 VAL A 681 REMARK 465 ARG A 682 REMARK 465 GLN A 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 479 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 540 CG OD1 ND2 REMARK 470 ARG B 581 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 ARG A 479 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 568 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 461 81.26 47.22 REMARK 500 TRP B 506 -115.72 60.17 REMARK 500 ASN B 540 -8.86 78.08 REMARK 500 ASN B 551 -114.11 54.34 REMARK 500 LYS B 568 43.64 -103.99 REMARK 500 ALA B 592 41.08 -82.38 REMARK 500 PHE B 593 -43.85 -137.79 REMARK 500 ILE B 595 -67.60 -141.94 REMARK 500 GLU B 627 78.77 -118.49 REMARK 500 ALA B 672 68.31 -102.12 REMARK 500 HIS B 674 66.81 -167.27 REMARK 500 THR B 683 54.91 -101.22 REMARK 500 GLU B 699 -7.84 71.67 REMARK 500 ILE B 702 112.01 -161.67 REMARK 500 TYR B 707 97.77 -164.03 REMARK 500 TRP A 506 -108.83 59.18 REMARK 500 ASN A 551 -118.20 57.86 REMARK 500 GLU A 567 46.47 -98.12 REMARK 500 ASP A 587 -114.27 -115.44 REMARK 500 GLN A 589 53.91 -145.88 REMARK 500 HIS A 674 119.73 -164.84 REMARK 500 HIS A 674 119.08 -164.46 REMARK 500 GLU A 699 -1.75 83.44 REMARK 500 HIS A 701 160.37 65.60 REMARK 500 ILE A 702 119.88 -171.47 REMARK 500 TYR A 707 113.67 -162.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MTC RELATED DB: PDB REMARK 900 RELATED ID: 3N9V RELATED DB: PDB DBREF 3NR8 B 419 732 UNP O15357 SHIP2_HUMAN 419 732 DBREF 3NR8 A 419 732 UNP O15357 SHIP2_HUMAN 419 732 SEQADV 3NR8 SER B 417 UNP O15357 EXPRESSION TAG SEQADV 3NR8 MET B 418 UNP O15357 EXPRESSION TAG SEQADV 3NR8 SER A 417 UNP O15357 EXPRESSION TAG SEQADV 3NR8 MET A 418 UNP O15357 EXPRESSION TAG SEQRES 1 B 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 B 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 B 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 B 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 B 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 B 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 B 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 B 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 B 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 B 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 B 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 B 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 B 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 B 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 B 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 B 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 B 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 B 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 B 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 B 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 B 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 B 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 B 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 B 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 B 316 VAL THR SER GLN SEQRES 1 A 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 A 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 A 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 A 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 A 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 A 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 A 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 A 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 A 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 A 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 A 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 A 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 A 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 A 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 A 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 A 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 A 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 A 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 A 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 A 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 A 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 A 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 A 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 A 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 A 316 VAL THR SER GLN HET CL B 1 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *36(H2 O) HELIX 1 1 VAL B 442 THR B 447 1 6 HELIX 2 2 GLY B 477 ASP B 494 1 18 HELIX 3 3 PRO B 516 ASN B 520 5 5 HELIX 4 4 LYS B 568 LEU B 583 1 16 HELIX 5 5 ASP B 615 ARG B 625 1 11 HELIX 6 6 PHE B 628 ARG B 633 1 6 HELIX 7 7 ASP B 635 LYS B 643 1 9 HELIX 8 8 VAL A 442 THR A 447 1 6 HELIX 9 9 GLY A 477 ASP A 494 1 18 HELIX 10 10 PRO A 516 ASN A 520 5 5 HELIX 11 11 LYS A 568 LEU A 583 1 16 HELIX 12 12 ASP A 594 ARG A 598 5 5 HELIX 13 13 ASP A 615 ARG A 625 1 11 HELIX 14 14 PHE A 628 ARG A 633 1 6 HELIX 15 15 ASP A 635 LYS A 643 1 9 SHEET 1 A 7 LEU B 451 LYS B 453 0 SHEET 2 A 7 ILE B 702 CYS B 709 -1 O TYR B 707 N LYS B 453 SHEET 3 A 7 VAL B 721 GLY B 728 -1 O GLU B 726 N ILE B 703 SHEET 4 A 7 MET B 423 TRP B 431 -1 N THR B 430 O VAL B 721 SHEET 5 A 7 ILE B 466 THR B 471 1 O GLY B 470 N GLY B 429 SHEET 6 A 7 ILE B 508 VAL B 514 -1 O LEU B 513 N TYR B 467 SHEET 7 A 7 ARG B 498 LEU B 505 -1 N ILE B 500 O VAL B 512 SHEET 1 B 5 ILE B 522 LYS B 531 0 SHEET 2 B 5 GLY B 542 PHE B 550 -1 O SER B 547 N SER B 526 SHEET 3 B 5 THR B 553 HIS B 561 -1 O ASN B 559 N VAL B 544 SHEET 4 B 5 HIS B 601 ASP B 607 1 O PHE B 603 N GLY B 556 SHEET 5 B 5 ASP B 690 LYS B 695 -1 O LEU B 693 N TRP B 604 SHEET 1 C 7 LEU A 451 LYS A 453 0 SHEET 2 C 7 ILE A 702 CYS A 709 -1 O TYR A 707 N LYS A 453 SHEET 3 C 7 VAL A 721 GLY A 728 -1 O PHE A 722 N GLY A 708 SHEET 4 C 7 MET A 423 TRP A 431 -1 N THR A 430 O VAL A 721 SHEET 5 C 7 ILE A 466 THR A 471 1 O VAL A 468 N PHE A 427 SHEET 6 C 7 ILE A 508 VAL A 514 -1 O LEU A 513 N TYR A 467 SHEET 7 C 7 ARG A 498 LEU A 505 -1 N LEU A 505 O ILE A 508 SHEET 1 D 5 ILE A 522 VAL A 530 0 SHEET 2 D 5 ALA A 543 PHE A 550 -1 O MET A 549 N SER A 523 SHEET 3 D 5 THR A 553 HIS A 561 -1 O ASN A 559 N VAL A 544 SHEET 4 D 5 HIS A 601 ASP A 607 1 O PHE A 603 N GLY A 556 SHEET 5 D 5 ASP A 690 LYS A 695 -1 O LEU A 693 N TRP A 604 CISPEP 1 TYR B 661 ARG B 662 0 -10.91 CISPEP 2 TYR A 661 ARG A 662 0 -5.93 SITE 1 AC1 2 HOH B 36 SER B 564 CRYST1 44.796 61.177 114.320 90.00 91.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022323 0.000000 0.000740 0.00000 SCALE2 0.000000 0.016346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008752 0.00000