PDB Short entry for 3NRQ HEADER TRANSPORT PROTEIN 30-JUN-10 3NRQ TITLE CRYSTAL STRUCTURE OF COPPER-RECONSTITUTED FETP FROM UROPATHOGENIC TITLE 2 ESCHERICHIA COLI STRAIN F11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PROTEIN-PROBABLY INVOLVED IN HIGH-AFFINITY FE2+ COMPND 3 TRANSPORT; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 25-175; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 340197; SOURCE 4 STRAIN: F11; SOURCE 5 GENE: ECF11_1994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS IMMUNOGLOBULIN-LIKE FOLD, IRON TRANSPORTER, COPPER BINDING, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.C.K.CHAN,M.E.P.MURPHY REVDAT 2 10-AUG-11 3NRQ 1 JRNL VERSN REVDAT 1 18-MAY-11 3NRQ 0 JRNL AUTH D.KOCH,A.C.CHAN,M.E.MURPHY,H.LILIE,G.GRASS,D.H.NIES JRNL TITL CHARACTERIZATION OF A DIPARTITE IRON UPTAKE SYSTEM FROM JRNL TITL 2 UROPATHOGENIC ESCHERICHIA COLI STRAIN F11. JRNL REF J.BIOL.CHEM. V. 286 25317 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21596746 JRNL DOI 10.1074/JBC.M111.222745 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 31663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2497 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3406 ; 1.394 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 6.716 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;36.722 ;24.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;14.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 8.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1975 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 0.768 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2494 ; 1.377 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 954 ; 2.320 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 907 ; 3.685 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6431 -1.0973 24.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.2701 REMARK 3 T33: 0.3036 T12: 0.0168 REMARK 3 T13: 0.0305 T23: -0.2193 REMARK 3 L TENSOR REMARK 3 L11: 1.1810 L22: 1.4662 REMARK 3 L33: 1.3924 L12: -1.1105 REMARK 3 L13: -0.4095 L23: -0.3034 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0634 S13: -0.2086 REMARK 3 S21: -0.1347 S22: -0.0148 S23: 0.1637 REMARK 3 S31: 0.1368 S32: 0.3357 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3722 -4.9399 25.9917 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.0916 REMARK 3 T33: 0.1940 T12: -0.0686 REMARK 3 T13: 0.0170 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 11.5918 L22: 0.9595 REMARK 3 L33: 18.4520 L12: 0.2204 REMARK 3 L13: -13.6671 L23: -1.7519 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.0546 S13: -0.2672 REMARK 3 S21: -0.0723 S22: 0.0962 S23: 0.2679 REMARK 3 S31: 0.0398 S32: -0.0786 S33: -0.1391 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4836 -0.2050 23.9071 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0823 REMARK 3 T33: 0.1443 T12: -0.0035 REMARK 3 T13: 0.0178 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.6505 L22: 1.5498 REMARK 3 L33: 2.8959 L12: -0.1031 REMARK 3 L13: 1.2364 L23: 0.5891 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.0197 S13: -0.2372 REMARK 3 S21: 0.0011 S22: 0.0690 S23: 0.2671 REMARK 3 S31: -0.1046 S32: -0.2456 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4923 5.4219 28.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.0652 REMARK 3 T33: 0.1257 T12: -0.0110 REMARK 3 T13: 0.0422 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.8085 L22: 0.6796 REMARK 3 L33: 1.8482 L12: 0.1473 REMARK 3 L13: -0.0983 L23: 0.1661 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0700 S13: -0.0167 REMARK 3 S21: 0.0256 S22: 0.0474 S23: -0.1156 REMARK 3 S31: -0.1034 S32: -0.0198 S33: -0.0423 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3080 5.7547 33.4105 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.0637 REMARK 3 T33: 0.1326 T12: 0.0037 REMARK 3 T13: 0.0412 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.9870 L22: 0.3100 REMARK 3 L33: 1.5441 L12: 0.1795 REMARK 3 L13: -0.1339 L23: -0.2487 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.0098 S13: -0.0247 REMARK 3 S21: 0.0145 S22: 0.0517 S23: -0.0601 REMARK 3 S31: -0.1504 S32: 0.0681 S33: -0.0691 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1102 5.3709 19.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.1457 REMARK 3 T33: 0.0680 T12: 0.0054 REMARK 3 T13: 0.0507 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.2560 L22: 3.1865 REMARK 3 L33: 6.6072 L12: 1.2625 REMARK 3 L13: 1.5879 L23: 3.1702 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: 0.2927 S13: 0.0221 REMARK 3 S21: -0.0731 S22: -0.0156 S23: -0.0906 REMARK 3 S31: 0.0769 S32: 0.0027 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5969 -3.2431 60.6414 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.3555 REMARK 3 T33: 0.7144 T12: -0.0187 REMARK 3 T13: -0.3156 T23: 0.1850 REMARK 3 L TENSOR REMARK 3 L11: 26.8063 L22: 5.4517 REMARK 3 L33: 3.4131 L12: -12.0809 REMARK 3 L13: 9.5647 L23: -4.3094 REMARK 3 S TENSOR REMARK 3 S11: 0.9730 S12: 2.4159 S13: 1.1753 REMARK 3 S21: -0.4569 S22: -1.2444 S23: -0.5870 REMARK 3 S31: 0.4021 S32: 0.8616 S33: 0.2715 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1613 -4.1218 56.7543 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1497 REMARK 3 T33: 0.1387 T12: -0.0131 REMARK 3 T13: -0.0011 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.5295 L22: 2.2713 REMARK 3 L33: 1.4631 L12: 0.9889 REMARK 3 L13: 0.5142 L23: 1.4343 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: -0.0517 S13: -0.1125 REMARK 3 S21: 0.1490 S22: 0.0006 S23: -0.2657 REMARK 3 S31: 0.0172 S32: 0.1584 S33: -0.1104 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2810 8.5312 58.8946 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.1395 REMARK 3 T33: 0.1651 T12: -0.0175 REMARK 3 T13: 0.0641 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.8566 L22: 0.4039 REMARK 3 L33: 4.0434 L12: 0.5382 REMARK 3 L13: 0.4443 L23: -0.1833 REMARK 3 S TENSOR REMARK 3 S11: 0.1487 S12: -0.1654 S13: -0.1210 REMARK 3 S21: 0.1420 S22: -0.1243 S23: -0.1121 REMARK 3 S31: -0.4999 S32: -0.0962 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7932 -8.1035 43.4807 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.0947 REMARK 3 T33: 0.1547 T12: 0.0095 REMARK 3 T13: 0.0003 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1253 L22: 2.7177 REMARK 3 L33: 0.4852 L12: 0.1590 REMARK 3 L13: -0.1619 L23: 0.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0012 S13: -0.0823 REMARK 3 S21: -0.0385 S22: 0.0210 S23: -0.0567 REMARK 3 S31: 0.0402 S32: 0.0297 S33: -0.0273 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3024 2.9898 65.7913 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2005 REMARK 3 T33: 0.0784 T12: 0.0140 REMARK 3 T13: 0.0416 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.5407 L22: 0.5222 REMARK 3 L33: 6.0219 L12: 0.2186 REMARK 3 L13: 0.4084 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: -0.2582 S13: -0.0203 REMARK 3 S21: 0.0893 S22: -0.0059 S23: 0.0957 REMARK 3 S31: -0.3284 S32: -0.3214 S33: -0.0598 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9335 4.5186 52.0127 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1017 REMARK 3 T33: 0.0875 T12: -0.0009 REMARK 3 T13: -0.0096 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 8.5416 L22: 2.3266 REMARK 3 L33: 3.1478 L12: -2.2094 REMARK 3 L13: -4.4110 L23: 1.4682 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.2240 S13: -0.1422 REMARK 3 S21: 0.2569 S22: -0.0035 S23: -0.1352 REMARK 3 S31: -0.1005 S32: 0.0627 S33: -0.0359 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2951 -1.6452 49.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0551 REMARK 3 T33: 0.0854 T12: 0.0092 REMARK 3 T13: 0.0134 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.6158 L22: 0.6882 REMARK 3 L33: 2.1404 L12: 0.3265 REMARK 3 L13: 0.1482 L23: 0.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: -0.0540 S13: -0.0593 REMARK 3 S21: 0.0354 S22: 0.0266 S23: 0.0287 REMARK 3 S31: -0.0625 S32: -0.1113 S33: -0.0671 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 137 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4332 -4.4189 58.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1290 REMARK 3 T33: 0.0814 T12: -0.0036 REMARK 3 T13: 0.0302 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 1.4146 L22: 0.9897 REMARK 3 L33: 6.8988 L12: 0.3456 REMARK 3 L13: 2.6147 L23: 1.0777 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.1010 S13: -0.1605 REMARK 3 S21: 0.1553 S22: 0.0607 S23: -0.0311 REMARK 3 S31: 0.0386 S32: 0.0073 S33: -0.1147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3NRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB060197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97641 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL SI(111) REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.325 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS PH 6.5, 25% REMARK 280 PENTAERYTHRITOL ETHOXYLATE (15/4 EO/OH), 25 MM AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PHE A 3 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 LEU A 157 REMARK 465 VAL A 158 REMARK 465 PRO A 159 REMARK 465 ARG A 160 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 PHE B 3 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 465 SER B 155 REMARK 465 GLY B 156 REMARK 465 LEU B 157 REMARK 465 VAL B 158 REMARK 465 PRO B 159 REMARK 465 ARG B 160 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 NE2 REMARK 620 2 HIS B 44 NE2 151.7 REMARK 620 3 HIS A 127 NE2 102.2 91.2 REMARK 620 4 MET B 90 SD 89.7 70.2 73.6 REMARK 620 5 GLU B 46 OE2 88.1 106.8 119.9 166.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 200 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 HIS A 44 NE2 157.1 REMARK 620 3 HIS B 127 NE2 106.8 95.4 REMARK 620 4 MET A 90 SD 93.0 78.9 95.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NRP RELATED DB: PDB DBREF 3NRQ A 3 153 UNP B3HWD5 B3HWD5_ECOLX 25 175 DBREF 3NRQ B 3 153 UNP B3HWD5 B3HWD5_ECOLX 25 175 SEQADV 3NRQ MET A 1 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ GLY A 2 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ SER A 154 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ SER A 155 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ GLY A 156 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ LEU A 157 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ VAL A 158 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ PRO A 159 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ ARG A 160 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ MET B 1 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ GLY B 2 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ SER B 154 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ SER B 155 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ GLY B 156 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ LEU B 157 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ VAL B 158 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ PRO B 159 UNP B3HWD5 EXPRESSION TAG SEQADV 3NRQ ARG B 160 UNP B3HWD5 EXPRESSION TAG SEQRES 1 A 160 MET GLY PHE LYS GLU TYR PRO ALA GLY GLU PRO VAL THR SEQRES 2 A 160 MET ASN GLU MET GLU LEU ALA ALA VAL TYR LEU GLN PRO SEQRES 3 A 160 ILE ASP MET GLU PRO ARG GLY MET GLY LEU PRO ALA ALA SEQRES 4 A 160 LYS ALA ASP VAL HIS LEU GLU ALA ASP ILE HIS ALA VAL SEQRES 5 A 160 GLU GLY ASN LYS ASN GLY PHE GLY ALA GLY GLU TRP ILE SEQRES 6 A 160 PRO TYR LEU THR ILE SER TYR THR LEU VAL ASN ASN ASP SEQRES 7 A 160 THR GLY GLU LYS GLN GLU GLY THR PHE MET PRO MET VAL SEQRES 8 A 160 ALA SER ASP GLY PRO HIS TYR GLY ALA ASN ILE LYS MET SEQRES 9 A 160 MET GLY VAL GLY ASN TYR LYS VAL THR TYR HIS ILE GLU SEQRES 10 A 160 PRO PRO SER LYS ALA GLY MET HIS ARG HIS THR ASP SER SEQRES 11 A 160 GLU THR GLY VAL GLY ARG TRP TRP LYS PRO PHE ASP VAL SEQRES 12 A 160 SER TYR GLU PHE LYS TYR VAL GLY LEU ASN SER SER GLY SEQRES 13 A 160 LEU VAL PRO ARG SEQRES 1 B 160 MET GLY PHE LYS GLU TYR PRO ALA GLY GLU PRO VAL THR SEQRES 2 B 160 MET ASN GLU MET GLU LEU ALA ALA VAL TYR LEU GLN PRO SEQRES 3 B 160 ILE ASP MET GLU PRO ARG GLY MET GLY LEU PRO ALA ALA SEQRES 4 B 160 LYS ALA ASP VAL HIS LEU GLU ALA ASP ILE HIS ALA VAL SEQRES 5 B 160 GLU GLY ASN LYS ASN GLY PHE GLY ALA GLY GLU TRP ILE SEQRES 6 B 160 PRO TYR LEU THR ILE SER TYR THR LEU VAL ASN ASN ASP SEQRES 7 B 160 THR GLY GLU LYS GLN GLU GLY THR PHE MET PRO MET VAL SEQRES 8 B 160 ALA SER ASP GLY PRO HIS TYR GLY ALA ASN ILE LYS MET SEQRES 9 B 160 MET GLY VAL GLY ASN TYR LYS VAL THR TYR HIS ILE GLU SEQRES 10 B 160 PRO PRO SER LYS ALA GLY MET HIS ARG HIS THR ASP SER SEQRES 11 B 160 GLU THR GLY VAL GLY ARG TRP TRP LYS PRO PHE ASP VAL SEQRES 12 B 160 SER TYR GLU PHE LYS TYR VAL GLY LEU ASN SER SER GLY SEQRES 13 B 160 LEU VAL PRO ARG HET CU A 200 2 HET CU B 200 2 HETNAM CU COPPER (II) ION FORMUL 3 CU 2(CU 2+) FORMUL 5 HOH *223(H2 O) HELIX 1 1 PRO A 37 ALA A 41 5 5 HELIX 2 2 PRO A 118 GLY A 123 5 6 HELIX 3 3 PRO B 37 ALA B 41 5 5 HELIX 4 4 PRO B 118 GLY B 123 5 6 SHEET 1 A 7 TYR A 6 MET A 14 0 SHEET 2 A 7 MET A 17 LEU A 24 -1 O TYR A 23 N TYR A 6 SHEET 3 A 7 VAL A 43 ALA A 51 -1 O GLU A 46 N VAL A 22 SHEET 4 A 7 GLY A 95 ILE A 102 -1 O ILE A 102 N VAL A 43 SHEET 5 A 7 MET A 88 ALA A 92 -1 N MET A 90 O HIS A 97 SHEET 6 A 7 HIS B 125 HIS B 127 1 O HIS B 125 N PRO A 89 SHEET 7 A 7 MET A 29 GLU A 30 -1 N GLU A 30 O ARG B 126 SHEET 1 B 4 LYS A 82 THR A 86 0 SHEET 2 B 4 THR A 69 ASN A 76 -1 N LEU A 74 O GLN A 83 SHEET 3 B 4 GLY A 108 GLU A 117 -1 O LYS A 111 N VAL A 75 SHEET 4 B 4 PHE A 141 TYR A 149 -1 O PHE A 147 N TYR A 110 SHEET 1 C 7 TYR B 6 MET B 14 0 SHEET 2 C 7 MET B 17 LEU B 24 -1 O LEU B 19 N VAL B 12 SHEET 3 C 7 VAL B 43 ALA B 51 -1 O ASP B 48 N ALA B 20 SHEET 4 C 7 GLY B 95 ILE B 102 -1 O ILE B 102 N VAL B 43 SHEET 5 C 7 MET B 88 ALA B 92 -1 N MET B 90 O HIS B 97 SHEET 6 C 7 HIS A 125 HIS A 127 1 N HIS A 125 O VAL B 91 SHEET 7 C 7 MET B 29 GLU B 30 -1 O GLU B 30 N ARG A 126 SHEET 1 D 4 LYS B 82 THR B 86 0 SHEET 2 D 4 THR B 69 ASN B 76 -1 N LEU B 74 O GLN B 83 SHEET 3 D 4 GLY B 108 GLU B 117 -1 O HIS B 115 N SER B 71 SHEET 4 D 4 PHE B 141 TYR B 149 -1 O PHE B 147 N TYR B 110 LINK NE2 HIS B 97 CU B CU B 200 1555 1555 1.81 LINK NE2 HIS A 97 CU A CU A 200 1555 1555 1.82 LINK NE2 HIS A 44 CU A CU A 200 1555 1555 1.91 LINK NE2 HIS B 127 CU A CU A 200 1555 1555 2.05 LINK NE2 HIS A 44 CU B CU A 200 1555 1555 2.05 LINK NE2 HIS B 44 CU A CU B 200 1555 1555 2.07 LINK NE2 HIS B 44 CU B CU B 200 1555 1555 2.07 LINK SD BMET A 90 CU B CU A 200 1555 1555 2.20 LINK NE2 HIS B 127 CU B CU A 200 1555 1555 2.20 LINK NE2 HIS A 127 CU A CU B 200 1555 1555 2.25 LINK NE2 HIS A 127 CU B CU B 200 1555 1555 2.32 LINK NE2 HIS B 97 CU A CU B 200 1555 1555 2.33 LINK SD AMET B 90 CU A CU B 200 1555 1555 2.33 LINK NE2 HIS A 97 CU B CU A 200 1555 1555 2.44 LINK OE2 GLU B 46 CU B CU B 200 1555 1555 2.55 LINK SD AMET A 90 CU A CU A 200 1555 1555 2.68 CISPEP 1 GLU A 30 PRO A 31 0 -7.60 CISPEP 2 GLU B 30 PRO B 31 0 -0.63 SITE 1 AC1 5 HIS A 44 GLU A 46 MET A 90 HIS A 97 SITE 2 AC1 5 HIS B 127 SITE 1 AC2 5 HIS A 127 HIS B 44 GLU B 46 MET B 90 SITE 2 AC2 5 HIS B 97 CRYST1 38.410 51.970 146.650 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026035 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006819 0.00000