PDB Short entry for 3NVQ HEADER SIGNALING PROTEIN/PROTEIN BINDING 08-JUL-10 3NVQ TITLE MOLECULAR MECHANISM OF GUIDANCE CUE RECOGNITION CAVEAT 3NVQ NAG A 3 HAS WRONG CHIRALITY AT ATOM C1 NAG E 3 HAS WRONG CAVEAT 2 3NVQ CHIRALITY AT ATOM C1 NAG F 6 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMAPHORIN-7A; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 45-637; COMPND 5 SYNONYM: SEMAPHORIN-L, SEMA L, SEMAPHORIN-K1, SEMA K1, JOHN-MILTON- COMPND 6 HARGEN HUMAN BLOOD GROUP AG, JMH BLOOD GROUP ANTIGEN, CDW108; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PLEXIN-C1; COMPND 10 CHAIN: B, F; COMPND 11 FRAGMENT: UNP RESIDUES 33-507; COMPND 12 SYNONYM: VIRUS-ENCODED SEMAPHORIN PROTEIN RECEPTOR; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEMA7A, CD108, SEMAL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL: HEK293S; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PLXNC1, VESPR; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL: HEK293S KEYWDS BETA-PROPELLER, SIGNALING, SIGNALING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.JUO,H.LIU,A.SHIM,P.FOCIA,X.CHEN,C.GARCIA,X.HE REVDAT 2 29-JUL-20 3NVQ 1 CAVEAT COMPND REMARK SEQADV REVDAT 2 2 1 HETNAM LINK SITE ATOM REVDAT 1 15-SEP-10 3NVQ 0 JRNL AUTH H.LIU,Z.S.JUO,A.H.SHIM,P.J.FOCIA,X.CHEN,K.C.GARCIA,X.HE JRNL TITL STRUCTURAL BASIS OF SEMAPHORIN-PLEXIN RECOGNITION AND VIRAL JRNL TITL 2 MIMICRY FROM SEMA7A AND A39R COMPLEXES WITH PLEXINC1. JRNL REF CELL(CAMBRIDGE,MASS.) V. 142 749 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20727575 JRNL DOI 10.1016/J.CELL.2010.07.040 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 113764.840 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 112953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5694 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 15869 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 858 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 16658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 308 REMARK 3 SOLVENT ATOMS : 858 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.67000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 4.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 42.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3NVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG1000, 0.1M TRIS PH7.5, 0.2M REMARK 280 LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.82250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.20950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.03900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 118.20950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.82250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.03900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 45 REMARK 465 GLY A 634 REMARK 465 ALA B 509 REMARK 465 PRO B 510 REMARK 465 GLN E 45 REMARK 465 GLY E 634 REMARK 465 ALA F 509 REMARK 465 PRO F 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 330 C1 NDG A 4 1.45 REMARK 500 ND2 ASN B 407 O5 NAG B 7 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 296 N - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 ASN A 297 N - CA - CB ANGL. DEV. = 18.5 DEGREES REMARK 500 GLU A 601 CB - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 ASN A 602 N - CA - CB ANGL. DEV. = -16.7 DEGREES REMARK 500 ASN A 602 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP B 36 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 GLU B 37 N - CA - C ANGL. DEV. = 22.7 DEGREES REMARK 500 PRO B 38 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 GLU E 601 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ASN E 602 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 ASN E 602 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 62 124.63 -39.41 REMARK 500 GLN A 71 -168.64 -128.85 REMARK 500 SER A 115 21.57 -68.71 REMARK 500 THR A 116 70.58 -66.85 REMARK 500 LYS A 117 32.01 -157.16 REMARK 500 ASP A 122 73.18 60.77 REMARK 500 ARG A 124 -72.35 -140.51 REMARK 500 ASP A 125 65.12 -151.47 REMARK 500 CYS A 126 48.42 -108.94 REMARK 500 ASN A 128 78.52 -116.93 REMARK 500 PRO A 150 113.79 -31.33 REMARK 500 VAL A 156 -71.61 -103.15 REMARK 500 ASN A 177 87.69 -69.32 REMARK 500 LEU A 179 115.36 -166.89 REMARK 500 GLN A 232 -157.20 -91.14 REMARK 500 ASN A 297 4.10 91.34 REMARK 500 ASN A 360 -74.22 -50.06 REMARK 500 PRO A 368 -95.66 -49.59 REMARK 500 LEU A 397 82.14 60.42 REMARK 500 HIS A 420 30.36 -94.89 REMARK 500 GLU A 444 -100.38 -47.40 REMARK 500 GLN A 445 -148.67 -139.42 REMARK 500 SER A 481 -161.77 -126.24 REMARK 500 ASP A 491 53.34 -107.04 REMARK 500 SER A 523 -71.94 -69.77 REMARK 500 SER A 524 -57.10 -163.11 REMARK 500 GLU A 525 -2.47 -55.01 REMARK 500 ARG A 526 8.31 55.94 REMARK 500 PRO A 534 173.76 -59.70 REMARK 500 PRO A 546 164.66 -47.83 REMARK 500 GLU A 601 -81.04 -53.18 REMARK 500 GLU A 617 -80.44 -75.13 REMARK 500 GLU A 632 119.79 -168.52 REMARK 500 ASP B 36 117.15 54.23 REMARK 500 PRO B 38 46.19 -100.98 REMARK 500 SER B 61 -78.25 -102.13 REMARK 500 GLU B 73 -62.50 -91.07 REMARK 500 ASP B 82 -97.57 -98.82 REMARK 500 PRO B 96 -158.45 -75.04 REMARK 500 ALA B 117 88.04 61.19 REMARK 500 PHE B 129 155.26 -49.89 REMARK 500 PRO B 196 -179.61 -68.08 REMARK 500 THR B 259 -81.86 -100.19 REMARK 500 CYS B 283 48.37 -144.98 REMARK 500 PRO B 288 -74.67 -51.24 REMARK 500 GLU B 301 -91.82 -33.79 REMARK 500 LEU B 303 -18.83 -151.82 REMARK 500 ALA B 314 46.47 -103.44 REMARK 500 GLN B 318 28.42 -175.02 REMARK 500 ARG B 320 23.73 -69.92 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDG A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NVN RELATED DB: PDB REMARK 900 RELATED ID: 3NVX RELATED DB: PDB DBREF 3NVQ A 45 634 UNP O75326 SEM7A_HUMAN 45 634 DBREF 3NVQ B 35 507 UNP O60486 PLXC1_HUMAN 35 507 DBREF 3NVQ E 45 634 UNP O75326 SEM7A_HUMAN 45 634 DBREF 3NVQ F 35 507 UNP O60486 PLXC1_HUMAN 35 507 SEQADV 3NVQ GLY B 508 UNP O60486 EXPRESSION TAG SEQADV 3NVQ ALA B 509 UNP O60486 EXPRESSION TAG SEQADV 3NVQ PRO B 510 UNP O60486 EXPRESSION TAG SEQADV 3NVQ GLY F 508 UNP O60486 EXPRESSION TAG SEQADV 3NVQ ALA F 509 UNP O60486 EXPRESSION TAG SEQADV 3NVQ PRO F 510 UNP O60486 EXPRESSION TAG SEQRES 1 A 590 GLN GLY HIS LEU ARG SER GLY PRO ARG ILE PHE ALA VAL SEQRES 2 A 590 TRP LYS GLY HIS VAL GLY GLN ASP ARG VAL ASP PHE GLY SEQRES 3 A 590 GLN THR GLU PRO HIS THR VAL LEU PHE HIS GLU PRO GLY SEQRES 4 A 590 SER SER SER VAL TRP VAL GLY GLY ARG GLY LYS VAL TYR SEQRES 5 A 590 LEU PHE ASP PHE PRO GLU GLY LYS ASN ALA SER VAL ARG SEQRES 6 A 590 THR VAL ASN ILE GLY SER THR LYS GLY SER CYS LEU ASP SEQRES 7 A 590 LYS ARG ASP CYS GLU ASN TYR ILE THR LEU LEU GLU ARG SEQRES 8 A 590 ARG SER GLU GLY LEU LEU ALA CYS GLY THR ASN ALA ARG SEQRES 9 A 590 HIS PRO SER CYS TRP ASN LEU VAL ASN GLY THR VAL VAL SEQRES 10 A 590 PRO LEU GLY GLU MET ARG GLY TYR ALA PRO PHE SER PRO SEQRES 11 A 590 ASP GLU ASN SER LEU VAL LEU PHE GLU GLY ASP GLU VAL SEQRES 12 A 590 TYR SER THR ILE ARG LYS GLN GLU TYR ASN GLY LYS ILE SEQRES 13 A 590 PRO ARG PHE ARG ARG ILE ARG GLY GLU SER GLU LEU TYR SEQRES 14 A 590 THR SER ASP THR VAL MET GLN ASN PRO GLN PHE ILE LYS SEQRES 15 A 590 ALA THR ILE VAL HIS GLN ASP GLN ALA TYR ASP ASP LYS SEQRES 16 A 590 ILE TYR TYR PHE PHE ARG GLU ASP ASN PRO ASP LYS ASN SEQRES 17 A 590 PRO GLU ALA PRO LEU ASN VAL SER ARG VAL ALA GLN LEU SEQRES 18 A 590 CYS ARG GLY ASP GLN GLY GLY GLU SER SER LEU SER VAL SEQRES 19 A 590 SER LYS TRP ASN THR PHE LEU LYS ALA MET LEU VAL CYS SEQRES 20 A 590 SER ASP ALA ALA THR ASN LYS ASN PHE ASN ARG LEU GLN SEQRES 21 A 590 ASP VAL PHE LEU LEU PRO ASP PRO SER GLY GLN TRP ARG SEQRES 22 A 590 ASP THR ARG VAL TYR GLY VAL PHE SER ASN PRO TRP ASN SEQRES 23 A 590 TYR SER ALA VAL CYS VAL TYR SER LEU GLY ASP ILE ASP SEQRES 24 A 590 LYS VAL PHE ARG THR SER SER LEU LYS GLY TYR HIS SER SEQRES 25 A 590 SER LEU PRO ASN PRO ARG PRO GLY LYS CYS LEU PRO ASP SEQRES 26 A 590 GLN GLN PRO ILE PRO THR GLU THR PHE GLN VAL ALA ASP SEQRES 27 A 590 ARG HIS PRO GLU VAL ALA GLN ARG VAL GLU PRO MET GLY SEQRES 28 A 590 PRO LEU LYS THR PRO LEU PHE HIS SER LYS TYR HIS TYR SEQRES 29 A 590 GLN LYS VAL ALA VAL HIS ARG MET GLN ALA SER HIS GLY SEQRES 30 A 590 GLU THR PHE HIS VAL LEU TYR LEU THR THR ASP ARG GLY SEQRES 31 A 590 THR ILE HIS LYS VAL VAL GLU PRO GLY GLU GLN GLU HIS SEQRES 32 A 590 SER PHE ALA PHE ASN ILE MET GLU ILE GLN PRO PHE ARG SEQRES 33 A 590 ARG ALA ALA ALA ILE GLN THR MET SER LEU ASP ALA GLU SEQRES 34 A 590 ARG ARG LYS LEU TYR VAL SER SER GLN TRP GLU VAL SER SEQRES 35 A 590 GLN VAL PRO LEU ASP LEU CYS GLU VAL TYR GLY GLY GLY SEQRES 36 A 590 CYS HIS GLY CYS LEU MET SER ARG ASP PRO TYR CYS GLY SEQRES 37 A 590 TRP ASP GLN GLY ARG CYS ILE SER ILE TYR SER SER GLU SEQRES 38 A 590 ARG SER VAL LEU GLN SER ILE ASN PRO ALA GLU PRO HIS SEQRES 39 A 590 LYS GLU CYS PRO ASN PRO LYS PRO ASP LYS ALA PRO LEU SEQRES 40 A 590 GLN LYS VAL SER LEU ALA PRO ASN SER ARG TYR TYR LEU SEQRES 41 A 590 SER CYS PRO MET GLU SER ARG HIS ALA THR TYR SER TRP SEQRES 42 A 590 ARG HIS LYS GLU ASN VAL GLU GLN SER CYS GLU PRO GLY SEQRES 43 A 590 HIS GLN SER PRO ASN CYS ILE LEU PHE ILE GLU ASN LEU SEQRES 44 A 590 THR ALA GLN GLN TYR GLY HIS TYR PHE CYS GLU ALA GLN SEQRES 45 A 590 GLU GLY SER TYR PHE ARG GLU ALA GLN HIS TRP GLN LEU SEQRES 46 A 590 LEU PRO GLU ASP GLY SEQRES 1 B 476 ALA ASP GLU PRO VAL TRP ARG SER GLU GLN ALA ILE GLY SEQRES 2 B 476 ALA ILE ALA ALA SER GLN GLU ASP GLY VAL PHE VAL ALA SEQRES 3 B 476 SER GLY SER CYS LEU ASP GLN LEU ASP TYR SER LEU GLU SEQRES 4 B 476 HIS SER LEU SER ARG LEU TYR ARG ASP GLN ALA GLY ASN SEQRES 5 B 476 CYS THR GLU PRO VAL SER LEU ALA PRO PRO ALA ARG PRO SEQRES 6 B 476 ARG PRO GLY SER SER PHE SER LYS LEU LEU LEU PRO TYR SEQRES 7 B 476 ARG GLU GLY ALA ALA GLY LEU GLY GLY LEU LEU LEU THR SEQRES 8 B 476 GLY TRP THR PHE ASP ARG GLY ALA CYS GLU VAL ARG PRO SEQRES 9 B 476 LEU GLY ASN LEU SER ARG ASN SER LEU ARG ASN GLY THR SEQRES 10 B 476 GLU VAL VAL SER CYS HIS PRO GLN GLY SER THR ALA GLY SEQRES 11 B 476 VAL VAL TYR ARG ALA GLY ARG ASN ASN ARG TRP TYR LEU SEQRES 12 B 476 ALA VAL ALA ALA THR TYR VAL LEU PRO GLU PRO GLU THR SEQRES 13 B 476 ALA SER ARG CYS ASN PRO ALA ALA SER ASP HIS ASP THR SEQRES 14 B 476 ALA ILE ALA LEU LYS ASP THR GLU GLY ARG SER LEU ALA SEQRES 15 B 476 THR GLN GLU LEU GLY ARG LEU LYS LEU CYS GLU GLY ALA SEQRES 16 B 476 GLY SER LEU HIS PHE VAL ASP ALA PHE LEU TRP ASN GLY SEQRES 17 B 476 SER ILE TYR PHE PRO TYR TYR PRO TYR ASN TYR THR SER SEQRES 18 B 476 GLY ALA ALA THR GLY TRP PRO SER MET ALA ARG ILE ALA SEQRES 19 B 476 GLN SER THR GLU VAL LEU PHE GLN GLY GLN ALA SER LEU SEQRES 20 B 476 ASP CYS GLY HIS GLY HIS PRO ASP GLY ARG ARG LEU LEU SEQRES 21 B 476 LEU SER SER SER LEU VAL GLU ALA LEU ASP VAL TRP ALA SEQRES 22 B 476 GLY VAL PHE SER ALA ALA ALA GLY GLU GLY GLN GLU ARG SEQRES 23 B 476 ARG SER PRO THR THR THR ALA LEU CYS LEU PHE ARG MET SEQRES 24 B 476 SER GLU ILE GLN ALA ARG ALA LYS ARG VAL SER TRP ASP SEQRES 25 B 476 PHE LYS THR ALA GLU SER HIS CYS LYS GLU GLY ASP GLN SEQRES 26 B 476 PRO GLU ARG VAL GLN PRO ILE ALA SER SER THR LEU ILE SEQRES 27 B 476 HIS SER ASP LEU THR SER VAL TYR GLY THR VAL VAL MET SEQRES 28 B 476 ASN ARG THR VAL LEU PHE LEU GLY THR GLY ASP GLY GLN SEQRES 29 B 476 LEU LEU LYS VAL ILE LEU GLY GLU ASN LEU THR SER ASN SEQRES 30 B 476 CYS PRO GLU VAL ILE TYR GLU ILE LYS GLU GLU THR PRO SEQRES 31 B 476 VAL PHE TYR LYS LEU VAL PRO ASP PRO VAL LYS ASN ILE SEQRES 32 B 476 TYR ILE TYR LEU THR ALA GLY LYS GLU VAL ARG ARG ILE SEQRES 33 B 476 ARG VAL ALA ASN CYS ASN LYS HIS LYS SER CYS SER GLU SEQRES 34 B 476 CYS LEU THR ALA THR ASP PRO HIS CYS GLY TRP CYS HIS SEQRES 35 B 476 SER LEU GLN ARG CYS THR PHE GLN GLY ASP CYS VAL HIS SEQRES 36 B 476 SER GLU ASN LEU GLU ASN TRP LEU ASP ILE SER SER GLY SEQRES 37 B 476 ALA LYS LYS CYS PRO GLY ALA PRO SEQRES 1 E 590 GLN GLY HIS LEU ARG SER GLY PRO ARG ILE PHE ALA VAL SEQRES 2 E 590 TRP LYS GLY HIS VAL GLY GLN ASP ARG VAL ASP PHE GLY SEQRES 3 E 590 GLN THR GLU PRO HIS THR VAL LEU PHE HIS GLU PRO GLY SEQRES 4 E 590 SER SER SER VAL TRP VAL GLY GLY ARG GLY LYS VAL TYR SEQRES 5 E 590 LEU PHE ASP PHE PRO GLU GLY LYS ASN ALA SER VAL ARG SEQRES 6 E 590 THR VAL ASN ILE GLY SER THR LYS GLY SER CYS LEU ASP SEQRES 7 E 590 LYS ARG ASP CYS GLU ASN TYR ILE THR LEU LEU GLU ARG SEQRES 8 E 590 ARG SER GLU GLY LEU LEU ALA CYS GLY THR ASN ALA ARG SEQRES 9 E 590 HIS PRO SER CYS TRP ASN LEU VAL ASN GLY THR VAL VAL SEQRES 10 E 590 PRO LEU GLY GLU MET ARG GLY TYR ALA PRO PHE SER PRO SEQRES 11 E 590 ASP GLU ASN SER LEU VAL LEU PHE GLU GLY ASP GLU VAL SEQRES 12 E 590 TYR SER THR ILE ARG LYS GLN GLU TYR ASN GLY LYS ILE SEQRES 13 E 590 PRO ARG PHE ARG ARG ILE ARG GLY GLU SER GLU LEU TYR SEQRES 14 E 590 THR SER ASP THR VAL MET GLN ASN PRO GLN PHE ILE LYS SEQRES 15 E 590 ALA THR ILE VAL HIS GLN ASP GLN ALA TYR ASP ASP LYS SEQRES 16 E 590 ILE TYR TYR PHE PHE ARG GLU ASP ASN PRO ASP LYS ASN SEQRES 17 E 590 PRO GLU ALA PRO LEU ASN VAL SER ARG VAL ALA GLN LEU SEQRES 18 E 590 CYS ARG GLY ASP GLN GLY GLY GLU SER SER LEU SER VAL SEQRES 19 E 590 SER LYS TRP ASN THR PHE LEU LYS ALA MET LEU VAL CYS SEQRES 20 E 590 SER ASP ALA ALA THR ASN LYS ASN PHE ASN ARG LEU GLN SEQRES 21 E 590 ASP VAL PHE LEU LEU PRO ASP PRO SER GLY GLN TRP ARG SEQRES 22 E 590 ASP THR ARG VAL TYR GLY VAL PHE SER ASN PRO TRP ASN SEQRES 23 E 590 TYR SER ALA VAL CYS VAL TYR SER LEU GLY ASP ILE ASP SEQRES 24 E 590 LYS VAL PHE ARG THR SER SER LEU LYS GLY TYR HIS SER SEQRES 25 E 590 SER LEU PRO ASN PRO ARG PRO GLY LYS CYS LEU PRO ASP SEQRES 26 E 590 GLN GLN PRO ILE PRO THR GLU THR PHE GLN VAL ALA ASP SEQRES 27 E 590 ARG HIS PRO GLU VAL ALA GLN ARG VAL GLU PRO MET GLY SEQRES 28 E 590 PRO LEU LYS THR PRO LEU PHE HIS SER LYS TYR HIS TYR SEQRES 29 E 590 GLN LYS VAL ALA VAL HIS ARG MET GLN ALA SER HIS GLY SEQRES 30 E 590 GLU THR PHE HIS VAL LEU TYR LEU THR THR ASP ARG GLY SEQRES 31 E 590 THR ILE HIS LYS VAL VAL GLU PRO GLY GLU GLN GLU HIS SEQRES 32 E 590 SER PHE ALA PHE ASN ILE MET GLU ILE GLN PRO PHE ARG SEQRES 33 E 590 ARG ALA ALA ALA ILE GLN THR MET SER LEU ASP ALA GLU SEQRES 34 E 590 ARG ARG LYS LEU TYR VAL SER SER GLN TRP GLU VAL SER SEQRES 35 E 590 GLN VAL PRO LEU ASP LEU CYS GLU VAL TYR GLY GLY GLY SEQRES 36 E 590 CYS HIS GLY CYS LEU MET SER ARG ASP PRO TYR CYS GLY SEQRES 37 E 590 TRP ASP GLN GLY ARG CYS ILE SER ILE TYR SER SER GLU SEQRES 38 E 590 ARG SER VAL LEU GLN SER ILE ASN PRO ALA GLU PRO HIS SEQRES 39 E 590 LYS GLU CYS PRO ASN PRO LYS PRO ASP LYS ALA PRO LEU SEQRES 40 E 590 GLN LYS VAL SER LEU ALA PRO ASN SER ARG TYR TYR LEU SEQRES 41 E 590 SER CYS PRO MET GLU SER ARG HIS ALA THR TYR SER TRP SEQRES 42 E 590 ARG HIS LYS GLU ASN VAL GLU GLN SER CYS GLU PRO GLY SEQRES 43 E 590 HIS GLN SER PRO ASN CYS ILE LEU PHE ILE GLU ASN LEU SEQRES 44 E 590 THR ALA GLN GLN TYR GLY HIS TYR PHE CYS GLU ALA GLN SEQRES 45 E 590 GLU GLY SER TYR PHE ARG GLU ALA GLN HIS TRP GLN LEU SEQRES 46 E 590 LEU PRO GLU ASP GLY SEQRES 1 F 476 ALA ASP GLU PRO VAL TRP ARG SER GLU GLN ALA ILE GLY SEQRES 2 F 476 ALA ILE ALA ALA SER GLN GLU ASP GLY VAL PHE VAL ALA SEQRES 3 F 476 SER GLY SER CYS LEU ASP GLN LEU ASP TYR SER LEU GLU SEQRES 4 F 476 HIS SER LEU SER ARG LEU TYR ARG ASP GLN ALA GLY ASN SEQRES 5 F 476 CYS THR GLU PRO VAL SER LEU ALA PRO PRO ALA ARG PRO SEQRES 6 F 476 ARG PRO GLY SER SER PHE SER LYS LEU LEU LEU PRO TYR SEQRES 7 F 476 ARG GLU GLY ALA ALA GLY LEU GLY GLY LEU LEU LEU THR SEQRES 8 F 476 GLY TRP THR PHE ASP ARG GLY ALA CYS GLU VAL ARG PRO SEQRES 9 F 476 LEU GLY ASN LEU SER ARG ASN SER LEU ARG ASN GLY THR SEQRES 10 F 476 GLU VAL VAL SER CYS HIS PRO GLN GLY SER THR ALA GLY SEQRES 11 F 476 VAL VAL TYR ARG ALA GLY ARG ASN ASN ARG TRP TYR LEU SEQRES 12 F 476 ALA VAL ALA ALA THR TYR VAL LEU PRO GLU PRO GLU THR SEQRES 13 F 476 ALA SER ARG CYS ASN PRO ALA ALA SER ASP HIS ASP THR SEQRES 14 F 476 ALA ILE ALA LEU LYS ASP THR GLU GLY ARG SER LEU ALA SEQRES 15 F 476 THR GLN GLU LEU GLY ARG LEU LYS LEU CYS GLU GLY ALA SEQRES 16 F 476 GLY SER LEU HIS PHE VAL ASP ALA PHE LEU TRP ASN GLY SEQRES 17 F 476 SER ILE TYR PHE PRO TYR TYR PRO TYR ASN TYR THR SER SEQRES 18 F 476 GLY ALA ALA THR GLY TRP PRO SER MET ALA ARG ILE ALA SEQRES 19 F 476 GLN SER THR GLU VAL LEU PHE GLN GLY GLN ALA SER LEU SEQRES 20 F 476 ASP CYS GLY HIS GLY HIS PRO ASP GLY ARG ARG LEU LEU SEQRES 21 F 476 LEU SER SER SER LEU VAL GLU ALA LEU ASP VAL TRP ALA SEQRES 22 F 476 GLY VAL PHE SER ALA ALA ALA GLY GLU GLY GLN GLU ARG SEQRES 23 F 476 ARG SER PRO THR THR THR ALA LEU CYS LEU PHE ARG MET SEQRES 24 F 476 SER GLU ILE GLN ALA ARG ALA LYS ARG VAL SER TRP ASP SEQRES 25 F 476 PHE LYS THR ALA GLU SER HIS CYS LYS GLU GLY ASP GLN SEQRES 26 F 476 PRO GLU ARG VAL GLN PRO ILE ALA SER SER THR LEU ILE SEQRES 27 F 476 HIS SER ASP LEU THR SER VAL TYR GLY THR VAL VAL MET SEQRES 28 F 476 ASN ARG THR VAL LEU PHE LEU GLY THR GLY ASP GLY GLN SEQRES 29 F 476 LEU LEU LYS VAL ILE LEU GLY GLU ASN LEU THR SER ASN SEQRES 30 F 476 CYS PRO GLU VAL ILE TYR GLU ILE LYS GLU GLU THR PRO SEQRES 31 F 476 VAL PHE TYR LYS LEU VAL PRO ASP PRO VAL LYS ASN ILE SEQRES 32 F 476 TYR ILE TYR LEU THR ALA GLY LYS GLU VAL ARG ARG ILE SEQRES 33 F 476 ARG VAL ALA ASN CYS ASN LYS HIS LYS SER CYS SER GLU SEQRES 34 F 476 CYS LEU THR ALA THR ASP PRO HIS CYS GLY TRP CYS HIS SEQRES 35 F 476 SER LEU GLN ARG CYS THR PHE GLN GLY ASP CYS VAL HIS SEQRES 36 F 476 SER GLU ASN LEU GLU ASN TRP LEU ASP ILE SER SER GLY SEQRES 37 F 476 ALA LYS LYS CYS PRO GLY ALA PRO MODRES 3NVQ ASN A 258 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN A 157 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN E 258 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN E 330 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 252 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 149 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 149 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 241 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 86 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 252 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN E 105 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN A 105 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 241 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 86 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 141 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 407 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 386 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN B 141 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN E 157 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 407 ASN GLYCOSYLATION SITE MODRES 3NVQ ASN F 386 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG A 3 14 HET NDG A 4 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET NAG B 5 14 HET NAG B 6 14 HET NAG B 7 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG E 3 14 HET NAG E 4 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG F 3 14 HET NAG F 4 14 HET NAG F 5 14 HET NAG F 6 14 HET NAG F 7 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE FORMUL 5 NAG 21(C8 H15 N O6) FORMUL 8 NDG C8 H15 N O6 FORMUL 27 HOH *858(H2 O) HELIX 1 1 GLN A 234 ASP A 237 5 4 HELIX 2 2 GLN A 315 ASP A 318 5 4 HELIX 3 3 LEU A 339 SER A 349 1 11 HELIX 4 4 PRO A 374 HIS A 384 1 11 HELIX 5 5 GLY A 498 SER A 506 1 9 HELIX 6 6 THR B 128 ALA B 133 1 6 HELIX 7 7 ALA B 197 HIS B 201 5 5 HELIX 8 8 GLY B 212 ALA B 216 5 5 HELIX 9 9 GLU B 301 LEU B 303 5 3 HELIX 10 10 MET B 333 ALA B 340 1 8 HELIX 11 11 ASN B 454 HIS B 458 5 5 HELIX 12 12 SER B 460 THR B 466 1 7 HELIX 13 13 GLN E 234 ASP E 237 5 4 HELIX 14 14 GLN E 315 ASP E 318 5 4 HELIX 15 15 LEU E 339 SER E 349 1 11 HELIX 16 16 PRO E 374 HIS E 384 1 11 HELIX 17 17 GLY E 498 SER E 506 1 9 HELIX 18 18 THR E 604 TYR E 608 5 5 HELIX 19 19 THR F 128 ALA F 133 1 6 HELIX 20 20 ALA F 197 HIS F 201 5 5 HELIX 21 21 GLY F 212 ALA F 216 5 5 HELIX 22 22 GLU F 301 LEU F 303 5 3 HELIX 23 23 MET F 333 ALA F 340 1 8 HELIX 24 24 ASN F 454 HIS F 458 5 5 HELIX 25 25 SER F 460 THR F 466 1 7 SHEET 1 A 4 ARG A 66 ASP A 68 0 SHEET 2 A 4 GLU A 484 PRO A 489 -1 O VAL A 485 N VAL A 67 SHEET 3 A 4 LYS A 476 SER A 480 -1 N VAL A 479 O SER A 486 SHEET 4 A 4 THR A 467 ASP A 471 -1 N SER A 469 O TYR A 478 SHEET 1 B 4 VAL A 77 PHE A 79 0 SHEET 2 B 4 SER A 86 GLY A 90 -1 O TRP A 88 N PHE A 79 SHEET 3 B 4 LYS A 94 ASP A 99 -1 O PHE A 98 N VAL A 87 SHEET 4 B 4 THR A 110 ASN A 112 -1 O VAL A 111 N VAL A 95 SHEET 1 C 4 ILE A 130 ARG A 136 0 SHEET 2 C 4 GLY A 139 GLY A 144 -1 O LEU A 141 N GLU A 134 SHEET 3 C 4 SER A 151 LEU A 155 -1 O TRP A 153 N ALA A 142 SHEET 4 C 4 VAL A 160 GLU A 165 -1 O VAL A 161 N ASN A 154 SHEET 1 D 4 VAL A 180 GLU A 183 0 SHEET 2 D 4 GLU A 186 SER A 189 -1 O TYR A 188 N LEU A 181 SHEET 3 D 4 ARG A 204 ARG A 207 -1 O ARG A 204 N SER A 189 SHEET 4 D 4 LEU A 212 TYR A 213 -1 O LEU A 212 N ARG A 205 SHEET 1 E 4 GLN A 223 VAL A 230 0 SHEET 2 E 4 LYS A 239 ASP A 247 -1 O LYS A 239 N VAL A 230 SHEET 3 E 4 ASN A 258 CYS A 266 -1 O ARG A 261 N PHE A 244 SHEET 4 E 4 LEU A 285 MET A 288 -1 O ALA A 287 N VAL A 262 SHEET 1 F 4 ARG A 302 LEU A 309 0 SHEET 2 F 4 ARG A 320 SER A 326 -1 O VAL A 324 N GLN A 304 SHEET 3 F 4 SER A 332 SER A 338 -1 O ALA A 333 N PHE A 325 SHEET 4 F 4 PHE A 402 SER A 404 -1 O SER A 404 N SER A 332 SHEET 1 G 4 TYR A 408 GLN A 417 0 SHEET 2 G 4 THR A 423 THR A 431 -1 O THR A 430 N GLN A 409 SHEET 3 G 4 ILE A 436 VAL A 440 -1 O VAL A 439 N LEU A 427 SHEET 4 G 4 PHE A 451 ILE A 456 -1 O PHE A 451 N VAL A 440 SHEET 1 H 2 CYS A 511 ASP A 514 0 SHEET 2 H 2 ARG A 517 SER A 520 -1 O ARG A 517 N ASP A 514 SHEET 1 I 5 LEU A 551 LEU A 556 0 SHEET 2 I 5 PHE A 621 PRO A 631 1 O LEU A 630 N VAL A 554 SHEET 3 I 5 GLY A 609 GLN A 616 -1 N TYR A 611 O TRP A 627 SHEET 4 I 5 THR A 574 HIS A 579 -1 N ARG A 578 O PHE A 612 SHEET 5 I 5 ASN A 582 CYS A 587 -1 O CYS A 587 N TYR A 575 SHEET 1 J 2 TYR A 562 PRO A 567 0 SHEET 2 J 2 ASN A 595 ILE A 600 -1 O ILE A 600 N TYR A 562 SHEET 1 K 4 TRP B 40 ARG B 41 0 SHEET 2 K 4 GLU B 446 ARG B 451 -1 O VAL B 447 N TRP B 40 SHEET 3 K 4 TYR B 438 ALA B 443 -1 N LEU B 441 O ARG B 448 SHEET 4 K 4 VAL B 430 PRO B 431 -1 N VAL B 430 O TYR B 440 SHEET 1 L 4 ALA B 48 ALA B 51 0 SHEET 2 L 4 VAL B 57 ALA B 60 -1 O PHE B 58 N ALA B 50 SHEET 3 L 4 CYS B 64 LEU B 68 -1 O LEU B 68 N VAL B 57 SHEET 4 L 4 SER B 75 TYR B 80 -1 O SER B 77 N GLN B 67 SHEET 1 M 4 SER B 106 TYR B 112 0 SHEET 2 M 4 LEU B 122 TRP B 127 -1 O GLY B 126 N LYS B 107 SHEET 3 M 4 CYS B 134 PRO B 138 -1 O ARG B 137 N LEU B 123 SHEET 4 M 4 ARG B 148 GLY B 150 -1 O ARG B 148 N VAL B 136 SHEET 1 N 4 THR B 162 ALA B 169 0 SHEET 2 N 4 ARG B 174 ALA B 181 -1 O TYR B 176 N TYR B 167 SHEET 3 N 4 THR B 203 ASP B 209 -1 O ALA B 206 N VAL B 179 SHEET 4 N 4 ARG B 222 LYS B 224 -1 O LEU B 223 N ALA B 204 SHEET 1 O 3 SER B 231 PHE B 234 0 SHEET 2 O 3 SER B 243 ASN B 252 -1 O TYR B 249 N HIS B 233 SHEET 3 O 3 ALA B 257 ALA B 258 -1 O ALA B 257 N ASN B 252 SHEET 1 P 5 PHE B 238 TRP B 240 0 SHEET 2 P 5 SER B 243 ASN B 252 -1 O TYR B 245 N PHE B 238 SHEET 3 P 5 SER B 263 ALA B 268 -1 O SER B 263 N TYR B 248 SHEET 4 P 5 PHE B 275 LEU B 281 -1 O GLN B 276 N ARG B 266 SHEET 5 P 5 ARG B 362 VAL B 363 1 O VAL B 363 N SER B 280 SHEET 1 Q 4 LEU B 293 LEU B 299 0 SHEET 2 Q 4 VAL B 305 SER B 311 -1 O ALA B 307 N SER B 298 SHEET 3 Q 4 THR B 326 ARG B 332 -1 O PHE B 331 N TRP B 306 SHEET 4 Q 4 LEU B 371 HIS B 373 -1 O LEU B 371 N LEU B 328 SHEET 1 R 4 LEU B 376 VAL B 383 0 SHEET 2 R 4 THR B 388 THR B 394 -1 O GLY B 393 N THR B 377 SHEET 3 R 4 GLN B 398 ILE B 403 -1 O LEU B 400 N LEU B 392 SHEET 4 R 4 GLU B 414 GLU B 418 -1 O ILE B 416 N LEU B 399 SHEET 1 S 3 ARG B 480 THR B 482 0 SHEET 2 S 3 GLY B 473 CYS B 475 -1 N CYS B 475 O ARG B 480 SHEET 3 S 3 TRP B 496 LEU B 497 -1 O LEU B 497 N TRP B 474 SHEET 1 T 5 ILE E 54 PHE E 55 0 SHEET 2 T 5 PHE E 451 ILE E 456 1 O GLU E 455 N ILE E 54 SHEET 3 T 5 ILE E 436 VAL E 440 -1 N VAL E 440 O PHE E 451 SHEET 4 T 5 THR E 423 THR E 431 -1 N LEU E 427 O VAL E 439 SHEET 5 T 5 TYR E 408 GLN E 417 -1 N MET E 416 O PHE E 424 SHEET 1 U 4 ARG E 66 ASP E 68 0 SHEET 2 U 4 GLU E 484 PRO E 489 -1 O VAL E 485 N VAL E 67 SHEET 3 U 4 LYS E 476 SER E 480 -1 N VAL E 479 O SER E 486 SHEET 4 U 4 THR E 467 ASP E 471 -1 N SER E 469 O TYR E 478 SHEET 1 V 4 VAL E 77 PHE E 79 0 SHEET 2 V 4 SER E 86 GLY E 90 -1 O TRP E 88 N PHE E 79 SHEET 3 V 4 LYS E 94 ASP E 99 -1 O PHE E 98 N VAL E 87 SHEET 4 V 4 THR E 110 ASN E 112 -1 O VAL E 111 N VAL E 95 SHEET 1 W 4 ILE E 130 ARG E 136 0 SHEET 2 W 4 GLY E 139 GLY E 144 -1 O GLY E 139 N ARG E 136 SHEET 3 W 4 SER E 151 LEU E 155 -1 O SER E 151 N GLY E 144 SHEET 4 W 4 VAL E 161 GLU E 165 -1 O LEU E 163 N CYS E 152 SHEET 1 X 4 VAL E 180 GLU E 183 0 SHEET 2 X 4 GLU E 186 SER E 189 -1 O TYR E 188 N LEU E 181 SHEET 3 X 4 ARG E 204 ARG E 207 -1 O ARG E 204 N SER E 189 SHEET 4 X 4 LEU E 212 TYR E 213 -1 O LEU E 212 N ARG E 205 SHEET 1 Y 4 GLN E 223 VAL E 230 0 SHEET 2 Y 4 LYS E 239 ASP E 247 -1 O LYS E 239 N VAL E 230 SHEET 3 Y 4 ASN E 258 CYS E 266 -1 O ARG E 261 N PHE E 244 SHEET 4 Y 4 LEU E 285 MET E 288 -1 O ALA E 287 N VAL E 262 SHEET 1 Z 4 ARG E 302 LEU E 309 0 SHEET 2 Z 4 ARG E 320 SER E 326 -1 O VAL E 324 N GLN E 304 SHEET 3 Z 4 SER E 332 SER E 338 -1 O TYR E 337 N VAL E 321 SHEET 4 Z 4 PHE E 402 SER E 404 -1 O SER E 404 N SER E 332 SHEET 1 AA 2 CYS E 511 ASP E 514 0 SHEET 2 AA 2 ARG E 517 SER E 520 -1 O ARG E 517 N ASP E 514 SHEET 1 AB 5 LEU E 551 LEU E 556 0 SHEET 2 AB 5 PHE E 621 PRO E 631 1 O LEU E 630 N VAL E 554 SHEET 3 AB 5 GLY E 609 GLN E 616 -1 N GLY E 609 O LEU E 629 SHEET 4 AB 5 THR E 574 HIS E 579 -1 N ARG E 578 O PHE E 612 SHEET 5 AB 5 ASN E 582 CYS E 587 -1 O CYS E 587 N TYR E 575 SHEET 1 AC 2 TYR E 562 PRO E 567 0 SHEET 2 AC 2 ASN E 595 ILE E 600 -1 O ILE E 600 N TYR E 562 SHEET 1 AD 4 TRP F 40 ARG F 41 0 SHEET 2 AD 4 GLU F 446 ARG F 451 -1 O VAL F 447 N TRP F 40 SHEET 3 AD 4 TYR F 438 ALA F 443 -1 N LEU F 441 O ARG F 448 SHEET 4 AD 4 VAL F 430 PRO F 431 -1 N VAL F 430 O TYR F 440 SHEET 1 AE 4 ALA F 48 ALA F 51 0 SHEET 2 AE 4 VAL F 57 ALA F 60 -1 O PHE F 58 N ALA F 50 SHEET 3 AE 4 CYS F 64 LEU F 68 -1 O LEU F 68 N VAL F 57 SHEET 4 AE 4 SER F 75 TYR F 80 -1 O LEU F 79 N LEU F 65 SHEET 1 AF 4 SER F 106 TYR F 112 0 SHEET 2 AF 4 LEU F 122 TRP F 127 -1 O LEU F 122 N TYR F 112 SHEET 3 AF 4 CYS F 134 PRO F 138 -1 O ARG F 137 N LEU F 123 SHEET 4 AF 4 ARG F 148 GLY F 150 -1 O GLY F 150 N CYS F 134 SHEET 1 AG 4 THR F 162 ALA F 169 0 SHEET 2 AG 4 ARG F 174 ALA F 181 -1 O TYR F 176 N TYR F 167 SHEET 3 AG 4 THR F 203 ASP F 209 -1 O ALA F 206 N VAL F 179 SHEET 4 AG 4 ARG F 222 LYS F 224 -1 O LEU F 223 N ALA F 204 SHEET 1 AH 3 SER F 231 PHE F 234 0 SHEET 2 AH 3 SER F 243 ASN F 252 -1 O TYR F 249 N HIS F 233 SHEET 3 AH 3 ALA F 257 ALA F 258 -1 O ALA F 257 N ASN F 252 SHEET 1 AI 5 PHE F 238 TRP F 240 0 SHEET 2 AI 5 SER F 243 ASN F 252 -1 O TYR F 245 N PHE F 238 SHEET 3 AI 5 SER F 263 ALA F 268 -1 O ILE F 267 N ILE F 244 SHEET 4 AI 5 PHE F 275 LEU F 281 -1 O GLN F 276 N ARG F 266 SHEET 5 AI 5 ARG F 362 VAL F 363 1 O VAL F 363 N SER F 280 SHEET 1 AJ 4 LEU F 293 VAL F 300 0 SHEET 2 AJ 4 VAL F 305 SER F 311 -1 O ALA F 307 N SER F 298 SHEET 3 AJ 4 THR F 326 ARG F 332 -1 O PHE F 331 N TRP F 306 SHEET 4 AJ 4 LEU F 371 HIS F 373 -1 O HIS F 373 N THR F 326 SHEET 1 AK 4 LEU F 376 VAL F 383 0 SHEET 2 AK 4 THR F 388 THR F 394 -1 O GLY F 393 N THR F 377 SHEET 3 AK 4 GLN F 398 ILE F 403 -1 O LEU F 400 N LEU F 392 SHEET 4 AK 4 GLU F 414 GLU F 418 -1 O GLU F 414 N LYS F 401 SHEET 1 AL 3 ARG F 480 THR F 482 0 SHEET 2 AL 3 GLY F 473 CYS F 475 -1 N CYS F 475 O ARG F 480 SHEET 3 AL 3 TRP F 496 LEU F 497 -1 O LEU F 497 N TRP F 474 SSBOND 1 CYS A 120 CYS A 126 1555 1555 2.03 SSBOND 2 CYS A 143 CYS A 152 1555 1555 2.06 SSBOND 3 CYS A 266 CYS A 366 1555 1555 2.07 SSBOND 4 CYS A 291 CYS A 335 1555 1555 2.07 SSBOND 5 CYS A 493 CYS A 511 1555 1555 2.00 SSBOND 6 CYS A 500 CYS A 541 1555 1555 2.04 SSBOND 7 CYS A 503 CYS A 518 1555 1555 2.02 SSBOND 8 CYS A 566 CYS A 613 1555 1555 2.07 SSBOND 9 CYS A 587 CYS A 596 1555 1555 2.06 SSBOND 10 CYS B 64 CYS B 87 1555 1555 2.03 SSBOND 11 CYS B 156 CYS B 194 1555 1555 2.05 SSBOND 12 CYS B 226 CYS B 354 1555 1555 2.04 SSBOND 13 CYS B 283 CYS B 329 1555 1555 2.04 SSBOND 14 CYS B 455 CYS B 472 1555 1555 2.03 SSBOND 15 CYS B 461 CYS B 506 1555 1555 2.04 SSBOND 16 CYS B 464 CYS B 481 1555 1555 2.03 SSBOND 17 CYS B 475 CYS B 487 1555 1555 2.04 SSBOND 18 CYS E 120 CYS E 126 1555 1555 2.03 SSBOND 19 CYS E 143 CYS E 152 1555 1555 2.04 SSBOND 20 CYS E 266 CYS E 366 1555 1555 2.06 SSBOND 21 CYS E 291 CYS E 335 1555 1555 2.08 SSBOND 22 CYS E 493 CYS E 511 1555 1555 2.00 SSBOND 23 CYS E 500 CYS E 541 1555 1555 2.04 SSBOND 24 CYS E 503 CYS E 518 1555 1555 2.04 SSBOND 25 CYS E 566 CYS E 613 1555 1555 2.11 SSBOND 26 CYS E 587 CYS E 596 1555 1555 2.07 SSBOND 27 CYS F 64 CYS F 87 1555 1555 2.05 SSBOND 28 CYS F 156 CYS F 194 1555 1555 2.04 SSBOND 29 CYS F 226 CYS F 354 1555 1555 2.04 SSBOND 30 CYS F 283 CYS F 329 1555 1555 2.04 SSBOND 31 CYS F 455 CYS F 472 1555 1555 2.03 SSBOND 32 CYS F 461 CYS F 506 1555 1555 2.03 SSBOND 33 CYS F 464 CYS F 481 1555 1555 2.03 SSBOND 34 CYS F 475 CYS F 487 1555 1555 2.03 LINK C1 NAG A 1 ND2 ASN A 105 1555 1555 1.45 LINK C1 NAG A 2 ND2 ASN A 157 1555 1555 1.41 LINK C1 NAG A 3 ND2 ASN A 258 1555 1555 1.32 LINK C1 NAG B 1 ND2 ASN B 86 1555 1555 1.45 LINK C1 NAG B 2 ND2 ASN B 141 1555 1555 1.51 LINK C1 NAG B 3 ND2 ASN B 149 1555 1555 1.45 LINK C1 NAG B 4 ND2 ASN B 241 1555 1555 1.45 LINK C1 NAG B 5 ND2 ASN B 252 1555 1555 1.45 LINK C1 NAG B 6 ND2 ASN B 386 1555 1555 1.50 LINK C1 NAG B 7 ND2 ASN B 407 1555 1555 1.48 LINK C1 NAG E 1 ND2 ASN E 105 1555 1555 1.45 LINK C1 NAG E 2 ND2 ASN E 157 1555 1555 1.51 LINK C1 NAG E 3 ND2 ASN E 258 1555 1555 1.44 LINK C1 NAG E 4 ND2 ASN E 330 1555 1555 1.44 LINK C1 NAG F 1 ND2 ASN F 86 1555 1555 1.45 LINK C1 NAG F 2 ND2 ASN F 141 1555 1555 1.47 LINK C1 NAG F 3 ND2 ASN F 149 1555 1555 1.45 LINK C1 NAG F 4 ND2 ASN F 241 1555 1555 1.45 LINK C1 NAG F 5 ND2 ASN F 252 1555 1555 1.45 LINK C1 NAG F 6 ND2 ASN F 386 1555 1555 1.56 LINK C1 NAG F 7 ND2 ASN F 407 1555 1555 1.55 CRYST1 99.645 126.078 236.419 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004230 0.00000