PDB Short entry for 3NVX
HEADER    VIRAL PROTEIN                           08-JUL-10   3NVX              
TITLE     MOLECULAR MECHANISM OF GUIDANCE CUE RECOGNITION                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEIN A39;                                               
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: UNP RESIDUES 15-396;                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS;                                 
SOURCE   3 ORGANISM_TAXID: 10249;                                               
SOURCE   4 STRAIN: COPENHAGEN;                                                  
SOURCE   5 GENE: A39R;                                                          
SOURCE   6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 7108;                                       
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: HI5                                        
KEYWDS    BETA-PROPELLER, VIRAL PROTEIN                                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.LIU,Z.JUO,A.SHIM,P.FOCIA,X.CHEN,C.GARCIA,X.HE                       
REVDAT   3   29-JUL-20 3NVX    1       COMPND REMARK SEQADV HETNAM              
REVDAT   3 2                   1       LINK   SITE                              
REVDAT   2   13-JUL-11 3NVX    1       VERSN                                    
REVDAT   1   15-SEP-10 3NVX    0                                                
JRNL        AUTH   H.LIU,Z.S.JUO,A.H.SHIM,P.J.FOCIA,X.CHEN,K.C.GARCIA,X.HE      
JRNL        TITL   STRUCTURAL BASIS OF SEMAPHORIN-PLEXIN RECOGNITION AND VIRAL  
JRNL        TITL 2 MIMICRY FROM SEMA7A AND A39R COMPLEXES WITH PLEXINC1.        
JRNL        REF    CELL(CAMBRIDGE,MASS.)         V. 142   749 2010              
JRNL        REFN                   ISSN 0092-8674                               
JRNL        PMID   20727575                                                     
JRNL        DOI    10.1016/J.CELL.2010.07.040                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.5_2)                        
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 47.69                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 62224                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.178                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.225                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.070                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3154                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 47.6994 -  5.6847    1.00     2775   164  0.1965 0.2122        
REMARK   3     2  5.6847 -  4.5133    1.00     2680   155  0.1378 0.1677        
REMARK   3     3  4.5133 -  3.9431    1.00     2669   115  0.1379 0.1917        
REMARK   3     4  3.9431 -  3.5827    1.00     2618   151  0.1540 0.1987        
REMARK   3     5  3.5827 -  3.3260    1.00     2647   131  0.1532 0.2016        
REMARK   3     6  3.3260 -  3.1299    1.00     2610   150  0.1690 0.2318        
REMARK   3     7  3.1299 -  2.9732    1.00     2579   133  0.1697 0.2142        
REMARK   3     8  2.9732 -  2.8438    1.00     2627   122  0.1702 0.2152        
REMARK   3     9  2.8438 -  2.7343    1.00     2595   161  0.1675 0.2101        
REMARK   3    10  2.7343 -  2.6400    1.00     2566   145  0.1670 0.2260        
REMARK   3    11  2.6400 -  2.5574    1.00     2561   131  0.1763 0.1980        
REMARK   3    12  2.5574 -  2.4843    1.00     2639   130  0.1849 0.2614        
REMARK   3    13  2.4843 -  2.4189    1.00     2590   115  0.1872 0.2587        
REMARK   3    14  2.4189 -  2.3599    1.00     2607   129  0.1819 0.2442        
REMARK   3    15  2.3599 -  2.3063    1.00     2574   142  0.1823 0.2534        
REMARK   3    16  2.3063 -  2.2572    1.00     2563   149  0.1782 0.2625        
REMARK   3    17  2.2572 -  2.2120    0.99     2538   120  0.1879 0.2543        
REMARK   3    18  2.2120 -  2.1703    0.99     2508   157  0.2062 0.2693        
REMARK   3    19  2.1703 -  2.1315    0.98     2474   152  0.2193 0.2673        
REMARK   3    20  2.1315 -  2.0954    0.95     2472   138  0.2079 0.2819        
REMARK   3    21  2.0954 -  2.0616    0.96     2474   113  0.2131 0.2146        
REMARK   3    22  2.0616 -  2.0299    0.93     2330   150  0.2234 0.2935        
REMARK   3    23  2.0299 -  2.0000    0.90     2374   101  0.2390 0.3186        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.35                                          
REMARK   3   B_SOL              : 41.24                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.260            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL             
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 31.70                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.06350                                             
REMARK   3    B22 (A**2) : -2.23390                                             
REMARK   3    B33 (A**2) : 5.29730                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.007           6139                                  
REMARK   3   ANGLE     :  1.053           8302                                  
REMARK   3   CHIRALITY :  0.069            921                                  
REMARK   3   PLANARITY :  0.005           1052                                  
REMARK   3   DIHEDRAL  : 16.407           2234                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3NVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000060345.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-MAR-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SSRL                               
REMARK 200  BEAMLINE                       : BL9-3                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MAR CCD 165 MM                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 62229                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.6                               
REMARK 200  DATA REDUNDANCY                : 3.700                              
REMARK 200  R MERGE                    (I) : 0.05300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.03                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 91.9                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.70                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.15600                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.700                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS                        
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 53.74                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 15% PEG3350, 20%            
REMARK 280  GLYCEROL, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      105.58750            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000      105.58750            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       25.54400            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       85.50300            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       25.54400            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       85.50300            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000      105.58750            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       25.54400            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       85.50300            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000      105.58750            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       25.54400            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       85.50300            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU A    68                                                      
REMARK 465     ASP A    69                                                      
REMARK 465     ALA A    70                                                      
REMARK 465     ASP A    71                                                      
REMARK 465     SER B    12                                                      
REMARK 465     VAL B    67                                                      
REMARK 465     GLU B    68                                                      
REMARK 465     ASP B    69                                                      
REMARK 465     ALA B    70                                                      
REMARK 465     ASP B    71                                                      
REMARK 465     LYS B    72                                                      
REMARK 465     GLU B   336                                                      
REMARK 465     ASN B   337                                                      
REMARK 465     GLU B   338                                                      
REMARK 465     HIS B   339                                                      
REMARK 465     GLN B   394                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG B 340    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU B 341    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   NE   ARG A   182     OE2  GLU B   215     5555     2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    PRO B 200   C   -  N   -  CA  ANGL. DEV. =  10.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    VAL A  38     -161.99   -122.90                                   
REMARK 500    LEU A  55     -169.32   -129.64                                   
REMARK 500    GLU A 117       -1.09     73.44                                   
REMARK 500    CYS A 218       84.70   -150.06                                   
REMARK 500    TYR A 250     -154.99    -93.13                                   
REMARK 500    ASN A 317       11.75     58.51                                   
REMARK 500    THR A 377     -102.19   -104.78                                   
REMARK 500    PRO A 393     -106.92    -99.07                                   
REMARK 500    ASN B  48       13.99     59.22                                   
REMARK 500    LEU B  55     -157.05   -131.02                                   
REMARK 500    ASN B  58       40.09     36.84                                   
REMARK 500    PRO B  84      128.45    -34.65                                   
REMARK 500    GLU B 117       -1.80     77.97                                   
REMARK 500    SER B 180      -68.45   -122.32                                   
REMARK 500    TYR B 250     -144.89   -100.03                                   
REMARK 500    SER B 316       -7.69     79.33                                   
REMARK 500    THR B 377     -113.92   -102.99                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3NVN   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 3NVQ   RELATED DB: PDB                                   
DBREF  3NVX A   13   394  UNP    P21062   VA39_VACCC      15    396             
DBREF  3NVX B   13   394  UNP    P21062   VA39_VACCC      15    396             
SEQADV 3NVX SER A   12  UNP  P21062              EXPRESSION TAG                 
SEQADV 3NVX SER B   12  UNP  P21062              EXPRESSION TAG                 
SEQRES   1 A  383  SER ILE GLU TRP HIS LYS PHE GLU THR SER GLU GLU ILE          
SEQRES   2 A  383  ILE SER THR TYR LEU LEU ASP ASP VAL LEU TYR THR GLY          
SEQRES   3 A  383  VAL ASN GLY ALA VAL TYR THR PHE SER ASN ASN LYS LEU          
SEQRES   4 A  383  ASN LYS THR GLY LEU THR ASN ASN ASN TYR ILE THR THR          
SEQRES   5 A  383  SER ILE LYS VAL GLU ASP ALA ASP LYS ASP THR LEU VAL          
SEQRES   6 A  383  CYS GLY THR ASN ASN GLY ASN PRO LYS CYS TRP LYS ILE          
SEQRES   7 A  383  ASP GLY SER ASP ASP PRO LYS HIS ARG GLY ARG GLY TYR          
SEQRES   8 A  383  ALA PRO TYR GLN ASN SER LYS VAL THR ILE ILE SER TYR          
SEQRES   9 A  383  ASN GLU CYS VAL LEU SER ASP ILE ASN ILE SER LYS GLU          
SEQRES  10 A  383  GLY ILE LYS ARG TRP ARG ARG PHE ASP GLY PRO CYS GLY          
SEQRES  11 A  383  TYR ASP LEU TYR THR ALA ASP ASN VAL ILE PRO LYS ASP          
SEQRES  12 A  383  GLY LEU ARG GLY ALA PHE VAL ASP LYS ASP GLY THR TYR          
SEQRES  13 A  383  ASP LYS VAL TYR ILE LEU PHE THR ASP THR ILE GLY SER          
SEQRES  14 A  383  LYS ARG ILE VAL LYS ILE PRO TYR ILE ALA GLN MET CYS          
SEQRES  15 A  383  LEU ASN ASP GLU GLY GLY PRO SER SER LEU SER SER HIS          
SEQRES  16 A  383  ARG TRP SER THR PHE LEU LYS VAL GLU LEU GLU CYS ASP          
SEQRES  17 A  383  ILE ASP GLY ARG SER TYR ARG GLN ILE ILE HIS SER ARG          
SEQRES  18 A  383  THR ILE LYS THR ASP ASN ASP THR ILE LEU TYR VAL PHE          
SEQRES  19 A  383  PHE ASP SER PRO TYR SER LYS SER ALA LEU CYS THR TYR          
SEQRES  20 A  383  SER MET ASN THR ILE LYS GLN SER PHE SER THR SER LYS          
SEQRES  21 A  383  LEU GLU GLY TYR THR LYS GLN LEU PRO SER PRO ALA PRO          
SEQRES  22 A  383  GLY ILE CYS LEU PRO ALA GLY LYS VAL VAL SER HIS THR          
SEQRES  23 A  383  THR PHE GLU VAL ILE GLU LYS TYR ASN VAL LEU ASP ASP          
SEQRES  24 A  383  ILE ILE LYS PRO LEU SER ASN GLN PRO ILE PHE GLU GLY          
SEQRES  25 A  383  PRO SER GLY VAL LYS TRP PHE ASP ILE LYS GLU LYS GLU          
SEQRES  26 A  383  ASN GLU HIS ARG GLU TYR ARG ILE TYR PHE ILE LYS GLU          
SEQRES  27 A  383  ASN SER ILE TYR SER PHE ASP THR LYS SER LYS GLN THR          
SEQRES  28 A  383  ARG SER SER GLN VAL ASP ALA ARG LEU PHE SER VAL MET          
SEQRES  29 A  383  VAL THR SER LYS PRO LEU PHE ILE ALA ASP ILE GLY ILE          
SEQRES  30 A  383  GLY VAL GLY MET PRO GLN                                      
SEQRES   1 B  383  SER ILE GLU TRP HIS LYS PHE GLU THR SER GLU GLU ILE          
SEQRES   2 B  383  ILE SER THR TYR LEU LEU ASP ASP VAL LEU TYR THR GLY          
SEQRES   3 B  383  VAL ASN GLY ALA VAL TYR THR PHE SER ASN ASN LYS LEU          
SEQRES   4 B  383  ASN LYS THR GLY LEU THR ASN ASN ASN TYR ILE THR THR          
SEQRES   5 B  383  SER ILE LYS VAL GLU ASP ALA ASP LYS ASP THR LEU VAL          
SEQRES   6 B  383  CYS GLY THR ASN ASN GLY ASN PRO LYS CYS TRP LYS ILE          
SEQRES   7 B  383  ASP GLY SER ASP ASP PRO LYS HIS ARG GLY ARG GLY TYR          
SEQRES   8 B  383  ALA PRO TYR GLN ASN SER LYS VAL THR ILE ILE SER TYR          
SEQRES   9 B  383  ASN GLU CYS VAL LEU SER ASP ILE ASN ILE SER LYS GLU          
SEQRES  10 B  383  GLY ILE LYS ARG TRP ARG ARG PHE ASP GLY PRO CYS GLY          
SEQRES  11 B  383  TYR ASP LEU TYR THR ALA ASP ASN VAL ILE PRO LYS ASP          
SEQRES  12 B  383  GLY LEU ARG GLY ALA PHE VAL ASP LYS ASP GLY THR TYR          
SEQRES  13 B  383  ASP LYS VAL TYR ILE LEU PHE THR ASP THR ILE GLY SER          
SEQRES  14 B  383  LYS ARG ILE VAL LYS ILE PRO TYR ILE ALA GLN MET CYS          
SEQRES  15 B  383  LEU ASN ASP GLU GLY GLY PRO SER SER LEU SER SER HIS          
SEQRES  16 B  383  ARG TRP SER THR PHE LEU LYS VAL GLU LEU GLU CYS ASP          
SEQRES  17 B  383  ILE ASP GLY ARG SER TYR ARG GLN ILE ILE HIS SER ARG          
SEQRES  18 B  383  THR ILE LYS THR ASP ASN ASP THR ILE LEU TYR VAL PHE          
SEQRES  19 B  383  PHE ASP SER PRO TYR SER LYS SER ALA LEU CYS THR TYR          
SEQRES  20 B  383  SER MET ASN THR ILE LYS GLN SER PHE SER THR SER LYS          
SEQRES  21 B  383  LEU GLU GLY TYR THR LYS GLN LEU PRO SER PRO ALA PRO          
SEQRES  22 B  383  GLY ILE CYS LEU PRO ALA GLY LYS VAL VAL SER HIS THR          
SEQRES  23 B  383  THR PHE GLU VAL ILE GLU LYS TYR ASN VAL LEU ASP ASP          
SEQRES  24 B  383  ILE ILE LYS PRO LEU SER ASN GLN PRO ILE PHE GLU GLY          
SEQRES  25 B  383  PRO SER GLY VAL LYS TRP PHE ASP ILE LYS GLU LYS GLU          
SEQRES  26 B  383  ASN GLU HIS ARG GLU TYR ARG ILE TYR PHE ILE LYS GLU          
SEQRES  27 B  383  ASN SER ILE TYR SER PHE ASP THR LYS SER LYS GLN THR          
SEQRES  28 B  383  ARG SER SER GLN VAL ASP ALA ARG LEU PHE SER VAL MET          
SEQRES  29 B  383  VAL THR SER LYS PRO LEU PHE ILE ALA ASP ILE GLY ILE          
SEQRES  30 B  383  GLY VAL GLY MET PRO GLN                                      
MODRES 3NVX ASN B   51  ASN  GLYCOSYLATION SITE                                 
MODRES 3NVX ASN A   51  ASN  GLYCOSYLATION SITE                                 
HET    NAG  A 395      14                                                       
HET    NAG  B 395      14                                                       
HETNAM     NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE                         
FORMUL   3  NAG    2(C8 H15 N O6)                                               
FORMUL   5  HOH   *862(H2 O)                                                    
HELIX    1   1 ASN A   80  ASN A   83  5                                   4    
HELIX    2   2 SER A  201  SER A  205  5                                   5    
HELIX    3   3 MET A  260  SER A  270  1                                  11    
HELIX    4   4 SER A  295  TYR A  305  1                                  11    
HELIX    5   5 PRO A  314  GLN A  318  5                                   5    
HELIX    6   6 MET B  260  SER B  270  1                                  11    
HELIX    7   7 SER B  295  TYR B  305  1                                  11    
HELIX    8   8 PRO B  314  GLN B  318  5                                   5    
SHEET    1   A 4 GLU A  14  LYS A  17  0                                        
SHEET    2   A 4 GLY A 387  VAL A 390 -1  O  ILE A 388   N  HIS A  16           
SHEET    3   A 4 PRO A 380  ALA A 384 -1  N  PHE A 382   O  GLY A 389           
SHEET    4   A 4 LEU A 371  VAL A 376 -1  N  PHE A 372   O  ILE A 383           
SHEET    1   B 4 SER A  26  LEU A  30  0                                        
SHEET    2   B 4 VAL A  33  GLY A  37 -1  O  TYR A  35   N  TYR A  28           
SHEET    3   B 4 ALA A  41  SER A  46 -1  O  PHE A  45   N  LEU A  34           
SHEET    4   B 4 LYS A  49  GLY A  54 -1  O  ASN A  51   N  THR A  44           
SHEET    1   C 3 ILE A  61  LYS A  66  0                                        
SHEET    2   C 3 THR A  74  GLY A  78 -1  O  LEU A  75   N  ILE A  65           
SHEET    3   C 3 LYS A  85  LYS A  88 -1  O  TRP A  87   N  VAL A  76           
SHEET    1   D 4 ILE A 112  TYR A 115  0                                        
SHEET    2   D 4 CYS A 118  SER A 121 -1  O  LEU A 120   N  ILE A 113           
SHEET    3   D 4 ARG A 134  ARG A 135 -1  O  ARG A 134   N  SER A 121           
SHEET    4   D 4 LEU A 144  TYR A 145 -1  O  LEU A 144   N  ARG A 135           
SHEET    1   E 5 GLY A 158  ASP A 164  0                                        
SHEET    2   E 5 TYR A 167  ILE A 178 -1  O  TYR A 167   N  ASP A 164           
SHEET    3   E 5 VAL A 184  CYS A 193 -1  O  VAL A 184   N  ILE A 178           
SHEET    4   E 5 LEU A 212  LEU A 216 -1  O  VAL A 214   N  ILE A 189           
SHEET    5   E 5 VAL A 307  ILE A 312  1  O  ILE A 312   N  GLU A 215           
SHEET    1   F 2 ASP A 219  ILE A 220  0                                        
SHEET    2   F 2 ARG A 223  SER A 224 -1  O  ARG A 223   N  ILE A 220           
SHEET    1   G 4 GLN A 227  LYS A 235  0                                        
SHEET    2   G 4 THR A 240  ASP A 247 -1  O  TYR A 243   N  ARG A 232           
SHEET    3   G 4 LYS A 252  SER A 259 -1  O  ALA A 254   N  PHE A 246           
SHEET    4   G 4 PHE A 321  PRO A 324 -1  O  PHE A 321   N  LEU A 255           
SHEET    1   H 4 TRP A 329  GLU A 334  0                                        
SHEET    2   H 4 TYR A 342  LYS A 348 -1  O  ARG A 343   N  LYS A 333           
SHEET    3   H 4 SER A 351  ASP A 356 -1  O  PHE A 355   N  ILE A 344           
SHEET    4   H 4 THR A 362  GLN A 366 -1  O  SER A 365   N  ILE A 352           
SHEET    1   I 4 GLU B  14  LYS B  17  0                                        
SHEET    2   I 4 GLY B 387  VAL B 390 -1  O  ILE B 388   N  HIS B  16           
SHEET    3   I 4 PRO B 380  ALA B 384 -1  N  PHE B 382   O  GLY B 389           
SHEET    4   I 4 LEU B 371  VAL B 376 -1  N  PHE B 372   O  ILE B 383           
SHEET    1   J 4 ILE B  24  LEU B  30  0                                        
SHEET    2   J 4 VAL B  33  VAL B  38 -1  O  TYR B  35   N  TYR B  28           
SHEET    3   J 4 ALA B  41  SER B  46 -1  O  TYR B  43   N  THR B  36           
SHEET    4   J 4 LYS B  49  GLY B  54 -1  O  ASN B  51   N  THR B  44           
SHEET    1   K 3 ILE B  61  ILE B  65  0                                        
SHEET    2   K 3 LEU B  75  GLY B  78 -1  O  LEU B  75   N  ILE B  65           
SHEET    3   K 3 LYS B  85  LYS B  88 -1  O  TRP B  87   N  VAL B  76           
SHEET    1   L 4 ILE B 112  TYR B 115  0                                        
SHEET    2   L 4 CYS B 118  SER B 121 -1  O  CYS B 118   N  TYR B 115           
SHEET    3   L 4 ARG B 134  ARG B 135 -1  O  ARG B 134   N  SER B 121           
SHEET    4   L 4 LEU B 144  TYR B 145 -1  O  LEU B 144   N  ARG B 135           
SHEET    1   M 5 GLY B 158  ASP B 164  0                                        
SHEET    2   M 5 TYR B 167  ILE B 178 -1  O  TYR B 167   N  ASP B 164           
SHEET    3   M 5 VAL B 184  CYS B 193 -1  O  TYR B 188   N  PHE B 174           
SHEET    4   M 5 LEU B 212  LEU B 216 -1  O  VAL B 214   N  ILE B 189           
SHEET    5   M 5 VAL B 307  ILE B 312  1  O  ILE B 312   N  GLU B 215           
SHEET    1   N 2 ASP B 219  ILE B 220  0                                        
SHEET    2   N 2 ARG B 223  SER B 224 -1  O  ARG B 223   N  ILE B 220           
SHEET    1   O 4 GLN B 227  LYS B 235  0                                        
SHEET    2   O 4 THR B 240  ASP B 247 -1  O  PHE B 245   N  ILE B 229           
SHEET    3   O 4 LYS B 252  SER B 259 -1  O  ALA B 254   N  PHE B 246           
SHEET    4   O 4 PHE B 321  PRO B 324 -1  O  GLY B 323   N  SER B 253           
SHEET    1   P 4 TRP B 329  GLU B 334  0                                        
SHEET    2   P 4 TYR B 342  LYS B 348 -1  O  ARG B 343   N  LYS B 333           
SHEET    3   P 4 SER B 351  ASP B 356 -1  O  TYR B 353   N  PHE B 346           
SHEET    4   P 4 THR B 362  GLN B 366 -1  O  SER B 365   N  ILE B 352           
SSBOND   1 CYS A   77    CYS A   86                          1555   1555  2.07  
SSBOND   2 CYS A  118    CYS A  140                          1555   1555  2.04  
SSBOND   3 CYS A  193    CYS A  287                          1555   1555  2.04  
SSBOND   4 CYS A  218    CYS A  256                          1555   1555  2.04  
SSBOND   5 CYS B   77    CYS B   86                          1555   1555  2.06  
SSBOND   6 CYS B  118    CYS B  140                          1555   1555  2.04  
SSBOND   7 CYS B  193    CYS B  287                          1555   1555  2.04  
SSBOND   8 CYS B  218    CYS B  256                          1555   1555  2.05  
LINK         ND2 ASN A  51                 C1  NAG A 395     1555   1555  1.45  
LINK         ND2 ASN B  51                 C1  NAG B 395     1555   1555  1.45  
CISPEP   1 SER A  281    PRO A  282          0        -1.15                     
CISPEP   2 SER B  281    PRO B  282          0        27.16                     
CRYST1   51.088  171.006  211.175  90.00  90.00  90.00 C 2 2 21     16          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019574  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.005848  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.004735        0.00000