PDB Short entry for 3NX2 HEADER LYASE 12-JUL-10 3NX2 TITLE ENTEROBACTER SP. PX6-4 FERULIC ACID DECARBOXYLASE IN COMPLEX WITH TITLE 2 SUBSTRATE ANALOGUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERULIC ACID DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP. PX6-4; SOURCE 3 ORGANISM_TAXID: 418698; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS FERULIC ACID, DECARBOXYLASE, 4-VINYLGUAIACOL, CATALYTIC MECHANISM, KEYWDS 2 PHENOLIC ACID DECARBOXYLASE SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.GU,J.K.YANG,Z.Y.LOU,Z.H.MENG,K.-Q.ZHANG REVDAT 2 01-NOV-23 3NX2 1 REMARK REVDAT 1 16-FEB-11 3NX2 0 JRNL AUTH W.GU,J.K.YANG,Z.Y.LOU,L.M.LIANG,Y.SUN,J.W.HUANG,X.M.LI, JRNL AUTH 2 Y.CAO,Z.H.MENG,K.-Q.ZHANG JRNL TITL STRUCTURAL BASIS OF ENZYMATIC ACTIVITY FOR THE FERULIC ACID JRNL TITL 2 DECARBOXYLASE (FADASE) FROM ENTEROBACTER SP. PX6-4 JRNL REF PLOS ONE V. 6 16262 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21283705 JRNL DOI 10.1371/JOURNAL.PONE.0016262 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 22288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.691 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2728 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3724 ; 1.898 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 8.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;39.743 ;24.539 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;16.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.399 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2164 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1379 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1828 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1667 ; 0.815 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2664 ; 1.349 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 2.217 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1060 ; 3.151 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 20% (W/V) PEG 10000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.37000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 167 REMARK 465 LYS A 168 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 167 REMARK 465 LYS B 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 102 CD PRO A 105 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 124 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 12 -50.28 -124.85 REMARK 500 ASN A 48 -9.44 82.39 REMARK 500 HIS A 113 36.62 -140.37 REMARK 500 ALA A 123 -89.69 -76.50 REMARK 500 ASP A 165 69.56 -157.45 REMARK 500 ASN B 23 -38.96 -27.80 REMARK 500 ASN B 33 -164.07 -162.92 REMARK 500 ASN B 35 29.17 -140.31 REMARK 500 ASN B 48 -10.38 79.81 REMARK 500 CYS B 108 172.46 179.70 REMARK 500 HIS B 113 33.87 -141.46 REMARK 500 PHE B 140 123.69 -173.28 REMARK 500 ALA B 153 10.84 -147.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 22 ASN B 23 148.11 REMARK 500 ALA B 123 GLY B 124 -141.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FER A 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NX1 RELATED DB: PDB REMARK 900 SAME PROTEIN, APO FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE SEVERAL DISCREPANCIES BETWEEN THE DEPOSITED SEQUENCE AND REMARK 999 UNIPROT DATABASE. THE DEPOSITOR STATES THAT THE DEPOSITED SEQUENCE REMARK 999 IS CORRECT AND A WRONG SEQUENCE HAS BEEN DEPOSITED ON UNIPROT. DBREF 3NX2 A 1 168 UNP C6F3U5 C6F3U5_9ENTR 1 168 DBREF 3NX2 B 1 168 UNP C6F3U5 C6F3U5_9ENTR 1 168 SEQADV 3NX2 ASN A 26 UNP C6F3U5 GLU 26 SEE REMARK 999 SEQADV 3NX2 ASP A 34 UNP C6F3U5 GLU 34 SEE REMARK 999 SEQADV 3NX2 ILE A 37 UNP C6F3U5 LEU 37 SEE REMARK 999 SEQADV 3NX2 GLU A 55 UNP C6F3U5 GLN 55 SEE REMARK 999 SEQADV 3NX2 PRO A 105 UNP C6F3U5 LYS 105 SEE REMARK 999 SEQADV 3NX2 GLU A 122 UNP C6F3U5 ASP 122 SEE REMARK 999 SEQADV 3NX2 ASN B 26 UNP C6F3U5 GLU 26 SEE REMARK 999 SEQADV 3NX2 ASP B 34 UNP C6F3U5 GLU 34 SEE REMARK 999 SEQADV 3NX2 ILE B 37 UNP C6F3U5 LEU 37 SEE REMARK 999 SEQADV 3NX2 GLU B 55 UNP C6F3U5 GLN 55 SEE REMARK 999 SEQADV 3NX2 PRO B 105 UNP C6F3U5 LYS 105 SEE REMARK 999 SEQADV 3NX2 GLU B 122 UNP C6F3U5 ASP 122 SEE REMARK 999 SEQRES 1 A 168 MET ASN THR PHE ASP LYS HIS ASP LEU SER GLY PHE VAL SEQRES 2 A 168 GLY LYS HIS LEU VAL TYR THR TYR ASP ASN GLY TRP ASN SEQRES 3 A 168 TYR GLU ILE TYR VAL LYS ASN ASP ASN THR ILE ASP TYR SEQRES 4 A 168 ARG ILE HIS SER GLY LEU VAL GLY ASN ARG TRP VAL LYS SEQRES 5 A 168 ASP GLN GLU ALA TYR ILE VAL ARG VAL GLY GLU SER ILE SEQRES 6 A 168 TYR LYS ILE SER TRP THR GLU PRO THR GLY THR ASP VAL SEQRES 7 A 168 SER LEU ILE VAL ASN LEU GLY ASP SER LEU PHE HIS GLY SEQRES 8 A 168 THR ILE PHE PHE PRO ARG TRP VAL MET ASN ASN PRO GLU SEQRES 9 A 168 PRO THR VAL CYS PHE GLN ASN ASP HIS ILE PRO LEU MET SEQRES 10 A 168 ASN SER TYR ARG GLU ALA GLY PRO ALA TYR PRO THR GLU SEQRES 11 A 168 VAL ILE ASP GLU PHE ALA THR ILE THR PHE VAL ARG ASP SEQRES 12 A 168 CYS GLY ALA ASN ASN GLU SER VAL ILE ALA CYS ALA ALA SEQRES 13 A 168 SER GLU LEU PRO LYS ASN PHE PRO ASP ASN LEU LYS SEQRES 1 B 168 MET ASN THR PHE ASP LYS HIS ASP LEU SER GLY PHE VAL SEQRES 2 B 168 GLY LYS HIS LEU VAL TYR THR TYR ASP ASN GLY TRP ASN SEQRES 3 B 168 TYR GLU ILE TYR VAL LYS ASN ASP ASN THR ILE ASP TYR SEQRES 4 B 168 ARG ILE HIS SER GLY LEU VAL GLY ASN ARG TRP VAL LYS SEQRES 5 B 168 ASP GLN GLU ALA TYR ILE VAL ARG VAL GLY GLU SER ILE SEQRES 6 B 168 TYR LYS ILE SER TRP THR GLU PRO THR GLY THR ASP VAL SEQRES 7 B 168 SER LEU ILE VAL ASN LEU GLY ASP SER LEU PHE HIS GLY SEQRES 8 B 168 THR ILE PHE PHE PRO ARG TRP VAL MET ASN ASN PRO GLU SEQRES 9 B 168 PRO THR VAL CYS PHE GLN ASN ASP HIS ILE PRO LEU MET SEQRES 10 B 168 ASN SER TYR ARG GLU ALA GLY PRO ALA TYR PRO THR GLU SEQRES 11 B 168 VAL ILE ASP GLU PHE ALA THR ILE THR PHE VAL ARG ASP SEQRES 12 B 168 CYS GLY ALA ASN ASN GLU SER VAL ILE ALA CYS ALA ALA SEQRES 13 B 168 SER GLU LEU PRO LYS ASN PHE PRO ASP ASN LEU LYS HET FER A 169 14 HETNAM FER 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID HETSYN FER FERULIC ACID FORMUL 3 FER C10 H10 O4 FORMUL 4 HOH *250(H2 O) HELIX 1 1 PRO A 96 ASN A 102 1 7 HELIX 2 2 PRO A 103 VAL A 107 5 5 HELIX 3 3 PHE A 109 ASP A 112 5 4 HELIX 4 4 HIS A 113 GLY A 124 1 12 HELIX 5 5 ALA A 155 LEU A 159 5 5 HELIX 6 6 PRO B 96 ASN B 102 1 7 HELIX 7 7 PRO B 103 VAL B 107 5 5 HELIX 8 8 PHE B 109 ASP B 112 5 4 HELIX 9 9 HIS B 113 GLY B 124 1 12 HELIX 10 10 ALA B 155 LEU B 159 5 5 SHEET 1 A 9 TRP A 50 GLU A 55 0 SHEET 2 A 9 THR A 36 ILE A 41 -1 N ILE A 37 O GLN A 54 SHEET 3 A 9 ASN A 26 ASN A 33 -1 N TYR A 30 O ASP A 38 SHEET 4 A 9 LYS A 15 THR A 20 -1 N LEU A 17 O ILE A 29 SHEET 5 A 9 GLU A 130 ASP A 143 -1 O PHE A 140 N VAL A 18 SHEET 6 A 9 LEU A 88 PHE A 95 -1 N ILE A 93 O ILE A 132 SHEET 7 A 9 ASP A 77 ASN A 83 -1 N ASP A 77 O PHE A 94 SHEET 8 A 9 ILE A 65 THR A 71 -1 N TYR A 66 O VAL A 82 SHEET 9 A 9 TYR A 57 GLY A 62 -1 N TYR A 57 O SER A 69 SHEET 1 B 9 TRP B 50 GLU B 55 0 SHEET 2 B 9 THR B 36 ILE B 41 -1 N TYR B 39 O VAL B 51 SHEET 3 B 9 ASN B 26 ASN B 33 -1 N TYR B 30 O ASP B 38 SHEET 4 B 9 LYS B 15 TYR B 21 -1 N TYR B 19 O TYR B 27 SHEET 5 B 9 GLU B 130 ASP B 143 -1 O ARG B 142 N HIS B 16 SHEET 6 B 9 LEU B 88 PHE B 95 -1 N GLY B 91 O GLU B 134 SHEET 7 B 9 ASP B 77 ASN B 83 -1 N ASP B 77 O PHE B 94 SHEET 8 B 9 ILE B 65 THR B 71 -1 N TYR B 66 O VAL B 82 SHEET 9 B 9 TYR B 57 GLY B 62 -1 N TYR B 57 O SER B 69 CISPEP 1 TYR A 127 PRO A 128 0 -3.15 CISPEP 2 PHE A 163 PRO A 164 0 -0.67 CISPEP 3 TYR B 127 PRO B 128 0 -4.68 CISPEP 4 PHE B 163 PRO B 164 0 -3.94 SITE 1 AC1 7 TYR A 21 ASN A 23 TYR A 27 VAL A 46 SITE 2 AC1 7 PHE A 95 GLU A 134 HOH A 284 CRYST1 43.334 88.740 49.017 90.00 102.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023077 0.000000 0.005032 0.00000 SCALE2 0.000000 0.011269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020880 0.00000