PDB Short entry for 3NY1 HEADER LIGASE 14-JUL-10 3NY1 TITLE STRUCTURE OF THE UBR-BOX OF THE UBR1 UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UBR-BOX, UNP RESIDUES 98-168; COMPND 5 SYNONYM: N-RECOGNIN-1, UBIQUITIN-PROTEIN LIGASE E3-ALPHA-1, COMPND 6 UBIQUITIN-PROTEIN LIGASE E3-ALPHA-I; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ZINC FINGER-LIKE, UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MATTA-CAMACHO,G.KOZLOV,F.LI,K.GEHRING REVDAT 4 21-FEB-24 3NY1 1 REMARK SEQADV LINK REVDAT 3 20-OCT-10 3NY1 1 JRNL REVDAT 2 15-SEP-10 3NY1 1 JRNL REVDAT 1 11-AUG-10 3NY1 0 JRNL AUTH E.MATTA-CAMACHO,G.KOZLOV,F.F.LI,K.GEHRING JRNL TITL STRUCTURAL BASIS OF SUBSTRATE RECOGNITION AND SPECIFICITY IN JRNL TITL 2 THE N-END RULE PATHWAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1182 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20835242 JRNL DOI 10.1038/NSMB.1894 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 7043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 335 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1117 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1505 ; 1.471 ; 1.910 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 7.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;34.599 ;23.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 175 ;22.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;26.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 866 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 702 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 0.940 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 415 ; 1.707 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 381 ; 2.764 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7122 12.2191 8.3391 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.0703 REMARK 3 T33: 0.0850 T12: -0.0583 REMARK 3 T13: -0.0699 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3677 L22: 0.0650 REMARK 3 L33: 2.3828 L12: 0.2726 REMARK 3 L13: 1.7859 L23: 0.3329 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: -0.1228 S13: 0.1262 REMARK 3 S21: 0.0341 S22: -0.0541 S23: 0.0141 REMARK 3 S31: -0.2509 S32: -0.1219 S33: 0.1705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9845 7.8663 -2.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0515 REMARK 3 T33: 0.0801 T12: -0.0015 REMARK 3 T13: -0.0319 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.9969 L22: 4.1707 REMARK 3 L33: 5.7531 L12: 1.0268 REMARK 3 L13: 0.2065 L23: 1.5507 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: 0.1816 S13: 0.1576 REMARK 3 S21: 0.1797 S22: -0.0980 S23: -0.0144 REMARK 3 S31: -0.3540 S32: -0.0353 S33: 0.1832 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1535 11.7110 0.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.1714 REMARK 3 T33: 0.0949 T12: -0.1360 REMARK 3 T13: 0.1429 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.3644 L22: 3.2214 REMARK 3 L33: 35.1717 L12: -0.4930 REMARK 3 L13: 7.1340 L23: 4.7475 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.3947 S13: -0.0587 REMARK 3 S21: 0.1546 S22: 0.1463 S23: 0.2216 REMARK 3 S31: -0.8800 S32: -0.7954 S33: -0.0006 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5690 3.2555 1.0277 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.0943 REMARK 3 T33: 0.1018 T12: -0.0022 REMARK 3 T13: -0.0460 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.4932 L22: 2.6899 REMARK 3 L33: 6.2654 L12: 0.1591 REMARK 3 L13: -0.0151 L23: -0.1702 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.1965 S13: 0.0561 REMARK 3 S21: 0.0735 S22: -0.0965 S23: -0.1831 REMARK 3 S31: 0.0704 S32: 0.3275 S33: 0.1581 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6602 -3.4459 13.2196 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.1148 REMARK 3 T33: 0.1156 T12: -0.1090 REMARK 3 T13: 0.1481 T23: -0.0917 REMARK 3 L TENSOR REMARK 3 L11: 4.6525 L22: 0.2225 REMARK 3 L33: 12.8739 L12: -0.7218 REMARK 3 L13: 3.0130 L23: 0.3172 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.5635 S13: -0.1748 REMARK 3 S21: -0.0960 S22: -0.0190 S23: -0.0366 REMARK 3 S31: 0.2153 S32: 0.3269 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 111 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3512 1.0667 22.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.0764 REMARK 3 T33: 0.0782 T12: -0.0111 REMARK 3 T13: -0.0049 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.9345 L22: 1.8659 REMARK 3 L33: 3.8450 L12: 0.4251 REMARK 3 L13: -0.3692 L23: -0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.0887 S13: -0.1644 REMARK 3 S21: -0.1581 S22: 0.0219 S23: 0.1581 REMARK 3 S31: 0.1577 S32: -0.1475 S33: 0.0324 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7111 -2.9826 23.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1495 REMARK 3 T33: 0.3027 T12: -0.0824 REMARK 3 T13: -0.1294 T23: 0.0963 REMARK 3 L TENSOR REMARK 3 L11: 3.9792 L22: 3.1973 REMARK 3 L33: 12.6583 L12: -1.6132 REMARK 3 L13: -6.9950 L23: 3.5197 REMARK 3 S TENSOR REMARK 3 S11: -0.2827 S12: 0.5337 S13: -0.1586 REMARK 3 S21: -0.1200 S22: 0.1282 S23: 0.3441 REMARK 3 S31: 0.5672 S32: -0.9080 S33: 0.1545 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 144 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5312 5.2046 20.3758 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0934 REMARK 3 T33: 0.0813 T12: 0.0063 REMARK 3 T13: -0.0135 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.9785 L22: 2.3282 REMARK 3 L33: 3.4401 L12: 0.5416 REMARK 3 L13: 0.3491 L23: 0.2416 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.0764 S13: 0.0527 REMARK 3 S21: -0.0655 S22: -0.1081 S23: -0.0251 REMARK 3 S31: -0.1365 S32: 0.2311 S33: 0.0948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2836 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 25% PEG3350, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.63100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 92 REMARK 465 PRO A 93 REMARK 465 LEU A 94 REMARK 465 PRO A 168 REMARK 465 GLY B 92 REMARK 465 PRO B 93 REMARK 465 LEU B 94 REMARK 465 GLY B 95 REMARK 465 SER B 96 REMARK 465 GLN B 97 REMARK 465 PRO B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 104 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 123 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 166 GLU B 167 147.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 CYS A 124 SG 113.5 REMARK 620 3 CYS A 127 SG 104.8 100.8 REMARK 620 4 CYS A 149 SG 110.2 111.0 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 127 SG REMARK 620 2 CYS A 151 SG 115.2 REMARK 620 3 CYS A 163 SG 115.6 113.4 REMARK 620 4 HIS A 166 ND1 103.7 108.9 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 CYS A 115 SG 119.2 REMARK 620 3 HIS A 133 ND1 108.7 102.3 REMARK 620 4 HIS A 136 ND1 115.1 101.3 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 99 SG REMARK 620 2 CYS B 124 SG 116.1 REMARK 620 3 CYS B 127 SG 101.9 98.7 REMARK 620 4 CYS B 149 SG 111.8 116.5 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 127 SG REMARK 620 2 CYS B 151 SG 111.5 REMARK 620 3 CYS B 163 SG 110.5 116.9 REMARK 620 4 HIS B 166 ND1 105.9 107.2 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 112 SG REMARK 620 2 CYS B 115 SG 118.3 REMARK 620 3 HIS B 133 ND1 111.0 98.5 REMARK 620 4 HIS B 136 ND1 112.8 105.7 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NY2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UBR-BOX OF UBR2 UBIQUITIN LIGASE REMARK 900 RELATED ID: 3NY3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UBR-BOX OF UBR2 IN COMPLEX WITH N-RECOGNIN DBREF 3NY1 A 97 168 UNP Q8IWV7 UBR1_HUMAN 97 168 DBREF 3NY1 B 97 168 UNP Q8IWV7 UBR1_HUMAN 97 168 SEQADV 3NY1 GLY A 92 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 PRO A 93 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 LEU A 94 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 GLY A 95 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 SER A 96 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 GLY B 92 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 PRO B 93 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 LEU B 94 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 GLY B 95 UNP Q8IWV7 EXPRESSION TAG SEQADV 3NY1 SER B 96 UNP Q8IWV7 EXPRESSION TAG SEQRES 1 A 77 GLY PRO LEU GLY SER GLN LEU CYS GLY ARG VAL PHE LYS SEQRES 2 A 77 SER GLY GLU THR THR TYR SER CYS ARG ASP CYS ALA ILE SEQRES 3 A 77 ASP PRO THR CYS VAL LEU CYS MET ASP CYS PHE GLN ASP SEQRES 4 A 77 SER VAL HIS LYS ASN HIS ARG TYR LYS MET HIS THR SER SEQRES 5 A 77 THR GLY GLY GLY PHE CYS ASP CYS GLY ASP THR GLU ALA SEQRES 6 A 77 TRP LYS THR GLY PRO PHE CYS VAL ASN HIS GLU PRO SEQRES 1 B 77 GLY PRO LEU GLY SER GLN LEU CYS GLY ARG VAL PHE LYS SEQRES 2 B 77 SER GLY GLU THR THR TYR SER CYS ARG ASP CYS ALA ILE SEQRES 3 B 77 ASP PRO THR CYS VAL LEU CYS MET ASP CYS PHE GLN ASP SEQRES 4 B 77 SER VAL HIS LYS ASN HIS ARG TYR LYS MET HIS THR SER SEQRES 5 B 77 THR GLY GLY GLY PHE CYS ASP CYS GLY ASP THR GLU ALA SEQRES 6 B 77 TRP LYS THR GLY PRO PHE CYS VAL ASN HIS GLU PRO HET ZN A 4 1 HET ZN A 5 1 HET ZN A 6 1 HET ZN B 1 1 HET ZN B 2 1 HET ZN B 3 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HOH *40(H2 O) HELIX 1 1 CYS A 124 GLN A 129 1 6 HELIX 2 2 ASP A 130 HIS A 136 5 7 HELIX 3 3 MET B 125 ASP B 130 1 6 HELIX 4 4 SER B 131 HIS B 136 5 6 SHEET 1 A 2 THR A 108 CYS A 112 0 SHEET 2 A 2 TYR A 138 THR A 142 -1 O LYS A 139 N SER A 111 SHEET 1 B 3 LEU B 123 CYS B 124 0 SHEET 2 B 3 THR B 108 CYS B 112 -1 N TYR B 110 O LEU B 123 SHEET 3 B 3 TYR B 138 THR B 142 -1 O HIS B 141 N THR B 109 LINK ZN ZN A 4 SG CYS A 99 1555 1555 2.32 LINK ZN ZN A 4 SG CYS A 124 1555 1555 2.43 LINK ZN ZN A 4 SG CYS A 127 1555 1555 2.36 LINK ZN ZN A 4 SG CYS A 149 1555 1555 2.36 LINK ZN ZN A 5 SG CYS A 127 1555 1555 2.20 LINK ZN ZN A 5 SG CYS A 151 1555 1555 2.33 LINK ZN ZN A 5 SG CYS A 163 1555 1555 2.28 LINK ZN ZN A 5 ND1 HIS A 166 1555 1555 2.15 LINK ZN ZN A 6 SG CYS A 112 1555 1555 2.20 LINK ZN ZN A 6 SG CYS A 115 1555 1555 2.22 LINK ZN ZN A 6 ND1 HIS A 133 1555 1555 2.10 LINK ZN ZN A 6 ND1 HIS A 136 1555 1555 2.02 LINK ZN ZN B 1 SG CYS B 99 1555 1555 2.34 LINK ZN ZN B 1 SG CYS B 124 1555 1555 2.32 LINK ZN ZN B 1 SG CYS B 127 1555 1555 2.44 LINK ZN ZN B 1 SG CYS B 149 1555 1555 2.20 LINK ZN ZN B 2 SG CYS B 127 1555 1555 2.25 LINK ZN ZN B 2 SG CYS B 151 1555 1555 2.22 LINK ZN ZN B 2 SG CYS B 163 1555 1555 2.26 LINK ZN ZN B 2 ND1 HIS B 166 1555 1555 2.11 LINK ZN ZN B 3 SG CYS B 112 1555 1555 2.26 LINK ZN ZN B 3 SG CYS B 115 1555 1555 2.24 LINK ZN ZN B 3 ND1 HIS B 133 1555 1555 2.09 LINK ZN ZN B 3 ND1 HIS B 136 1555 1555 2.07 SITE 1 AC1 4 CYS A 99 CYS A 124 CYS A 127 CYS A 149 SITE 1 AC2 4 CYS A 127 CYS A 151 CYS A 163 HIS A 166 SITE 1 AC3 4 CYS A 112 CYS A 115 HIS A 133 HIS A 136 SITE 1 AC4 4 CYS B 99 CYS B 124 CYS B 127 CYS B 149 SITE 1 AC5 4 CYS B 127 CYS B 151 CYS B 163 HIS B 166 SITE 1 AC6 4 CYS B 112 CYS B 115 HIS B 133 HIS B 136 CRYST1 29.702 49.262 43.831 90.00 100.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033668 0.000000 0.006248 0.00000 SCALE2 0.000000 0.020300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023204 0.00000