PDB Short entry for 3NY3 HEADER LIGASE 14-JUL-10 3NY3 TITLE STRUCTURE OF THE UBR-BOX OF UBR2 IN COMPLEX WITH N-DEGRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBR-BOX, UNP RESIDUES 98-167; COMPND 5 SYNONYM: N-RECOGNIN-2, UBIQUITIN-PROTEIN LIGASE E3-ALPHA-2, COMPND 6 UBIQUITIN-PROTEIN LIGASE E3-ALPHA-II; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: N-DEGRON; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBR2, C6ORF133, KIAA0349; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED PEPTIDE KEYWDS ZINC FINGER-LIKE, UBIQUITIN LIGASE, PROTEIN BINDING, LYGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MATTA-CAMACHO,G.KOZLOV,F.LI,K.GEHRING REVDAT 5 21-FEB-24 3NY3 1 REMARK SEQADV LINK REVDAT 4 20-OCT-10 3NY3 1 JRNL REVDAT 3 15-SEP-10 3NY3 1 JRNL REVDAT 2 08-SEP-10 3NY3 1 COMPND TITLE REVDAT 1 11-AUG-10 3NY3 0 JRNL AUTH E.MATTA-CAMACHO,G.KOZLOV,F.F.LI,K.GEHRING JRNL TITL STRUCTURAL BASIS OF SUBSTRATE RECOGNITION AND SPECIFICITY IN JRNL TITL 2 THE N-END RULE PATHWAY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1182 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20835242 JRNL DOI 10.1038/NSMB.1894 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 7577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 589 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 790 ; 1.170 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 72 ; 5.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ;29.917 ;21.786 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 96 ;11.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;28.103 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 79 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 458 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 276 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 406 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 35 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.011 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.311 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 375 ; 0.833 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 579 ; 1.088 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 246 ; 1.762 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 211 ; 2.303 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3808 -6.3635 14.7425 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: -0.0131 REMARK 3 T33: 0.0210 T12: 0.0033 REMARK 3 T13: -0.0049 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.6114 L22: 1.5390 REMARK 3 L33: 4.6232 L12: -2.0400 REMARK 3 L13: -3.1947 L23: 1.4629 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: 0.0298 S13: -0.0816 REMARK 3 S21: 0.1726 S22: -0.0089 S23: 0.0430 REMARK 3 S31: 0.1548 S32: 0.0043 S33: 0.1459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8257 -7.3514 5.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: -0.0055 REMARK 3 T33: 0.0029 T12: 0.0179 REMARK 3 T13: -0.0090 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3329 L22: 1.9754 REMARK 3 L33: 2.1805 L12: 0.4088 REMARK 3 L13: 0.3702 L23: -0.6459 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.0203 S13: 0.0134 REMARK 3 S21: -0.1573 S22: -0.0457 S23: 0.0031 REMARK 3 S31: 0.0442 S32: 0.0623 S33: 0.0784 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3411 -8.8928 2.9566 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: 0.1210 REMARK 3 T33: -0.0657 T12: 0.0041 REMARK 3 T13: 0.0059 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 11.2385 L22: 2.6299 REMARK 3 L33: 5.7232 L12: 3.5889 REMARK 3 L13: 8.0153 L23: 2.6593 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: 0.7062 S13: -0.0247 REMARK 3 S21: -0.3566 S22: 0.0331 S23: -0.0877 REMARK 3 S31: -0.0085 S32: 0.5708 S33: -0.1279 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5973 -1.8061 11.6092 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.0024 REMARK 3 T33: 0.0367 T12: 0.0092 REMARK 3 T13: -0.0111 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.8533 L22: 2.5287 REMARK 3 L33: 1.6848 L12: 0.9764 REMARK 3 L13: 0.1127 L23: -0.6954 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0958 S13: 0.2070 REMARK 3 S21: -0.0876 S22: -0.0644 S23: 0.2290 REMARK 3 S31: -0.0600 S32: -0.1507 S33: 0.0687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MULTILAYER CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 25% PEG3350, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 93 REMARK 465 PRO A 94 REMARK 465 LEU A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 CYS A 124 SG 113.4 REMARK 620 3 CYS A 127 SG 106.2 97.4 REMARK 620 4 CYS A 149 SG 113.8 113.7 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 127 SG REMARK 620 2 CYS A 151 SG 113.5 REMARK 620 3 CYS A 163 SG 110.2 114.0 REMARK 620 4 HIS A 166 ND1 102.4 116.8 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 CYS A 115 SG 117.2 REMARK 620 3 HIS A 133 ND1 109.5 102.5 REMARK 620 4 HIS A 136 ND1 112.3 104.6 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NY1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UBR-BOX OF THE UBR1 UBIQUITIN LIGASE REMARK 900 RELATED ID: 3NY2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE UBR-BOX OF UBR2 UBIQUITIN LIGASE DBREF 3NY3 A 98 167 UNP Q8IWV8 UBR2_HUMAN 98 167 DBREF 3NY3 B 1 4 PDB 3NY3 3NY3 1 4 SEQADV 3NY3 GLY A 93 UNP Q8IWV8 EXPRESSION TAG SEQADV 3NY3 PRO A 94 UNP Q8IWV8 EXPRESSION TAG SEQADV 3NY3 LEU A 95 UNP Q8IWV8 EXPRESSION TAG SEQADV 3NY3 GLY A 96 UNP Q8IWV8 EXPRESSION TAG SEQADV 3NY3 SER A 97 UNP Q8IWV8 EXPRESSION TAG SEQRES 1 A 75 GLY PRO LEU GLY SER LEU CYS GLY ARG VAL PHE LYS VAL SEQRES 2 A 75 GLY GLU PRO THR TYR SER CYS ARG ASP CYS ALA VAL ASP SEQRES 3 A 75 PRO THR CYS VAL LEU CYS MET GLU CYS PHE LEU GLY SER SEQRES 4 A 75 ILE HIS ARG ASP HIS ARG TYR ARG MET THR THR SER GLY SEQRES 5 A 75 GLY GLY GLY PHE CYS ASP CYS GLY ASP THR GLU ALA TRP SEQRES 6 A 75 LYS GLU GLY PRO TYR CYS GLN LYS HIS GLU SEQRES 1 B 4 ARG ILE PHE SER HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 HOH *33(H2 O) HELIX 1 1 CYS A 124 GLY A 130 1 7 HELIX 2 2 SER A 131 HIS A 136 5 6 SHEET 1 A 2 PRO A 108 CYS A 112 0 SHEET 2 A 2 TYR A 138 THR A 142 -1 O THR A 141 N THR A 109 LINK ZN ZN A 1 SG CYS A 99 1555 1555 2.34 LINK ZN ZN A 1 SG CYS A 124 1555 1555 2.36 LINK ZN ZN A 1 SG CYS A 127 1555 1555 2.41 LINK ZN ZN A 1 SG CYS A 149 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 127 1555 1555 2.35 LINK ZN ZN A 2 SG CYS A 151 1555 1555 2.37 LINK ZN ZN A 2 SG CYS A 163 1555 1555 2.38 LINK ZN ZN A 2 ND1 HIS A 166 1555 1555 2.05 LINK ZN ZN A 3 SG CYS A 112 1555 1555 2.35 LINK ZN ZN A 3 SG CYS A 115 1555 1555 2.32 LINK ZN ZN A 3 ND1 HIS A 133 1555 1555 2.13 LINK ZN ZN A 3 ND1 HIS A 136 1555 1555 2.09 SITE 1 AC1 4 CYS A 99 CYS A 124 CYS A 127 CYS A 149 SITE 1 AC2 4 CYS A 127 CYS A 151 CYS A 163 HIS A 166 SITE 1 AC3 4 CYS A 112 CYS A 115 HIS A 133 HIS A 136 CRYST1 29.123 36.940 29.824 90.00 109.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034337 0.000000 0.012229 0.00000 SCALE2 0.000000 0.027071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035593 0.00000