PDB Short entry for 3OL2 HEADER SIGNALING PROTEIN 25-AUG-10 3OL2 TITLE RECEPTOR-LIGAND STRUCTURE OF HUMAN SEMAPHORIN 4D WITH PLEXIN B1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMAPHORIN-4D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS; COMPND 5 SYNONYM: BB18, A8, GR3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PLEXIN-B1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAINSL (1-2); COMPND 11 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEMA4D, C9ORF164, CD100, SEMAJ; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PLXNB1, KIAA0407, PLXN5, SEP; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS BETA-PROPELLER, SIGNALLING, EXTACELLULAR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.C.JANSSEN,R.A.ROBINSON,F.PEREZ-BRANGULI,C.H.BELL,C.J.MITCHELL, AUTHOR 2 C.SIEBOLD,E.Y.JONES REVDAT 4 29-JUL-20 3OL2 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-JAN-18 3OL2 1 AUTHOR REVDAT 2 05-JAN-11 3OL2 1 JRNL REVDAT 1 13-OCT-10 3OL2 0 JRNL AUTH B.J.JANSSEN,R.A.ROBINSON,F.PEREZ-BRANGULI,C.H.BELL, JRNL AUTH 2 K.J.MITCHELL,C.SIEBOLD,E.Y.JONES JRNL TITL STRUCTURAL BASIS OF SEMAPHORIN-PLEXIN SIGNALLING. JRNL REF NATURE V. 467 1118 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20877282 JRNL DOI 10.1038/NATURE09468 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2629 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2548 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2515 REMARK 3 BIN R VALUE (WORKING SET) : 0.2487 REMARK 3 BIN FREE R VALUE : 0.3926 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 215 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.90270 REMARK 3 B22 (A**2) : 0.67430 REMARK 3 B33 (A**2) : 15.22830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.415 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9074 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12378 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2946 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 215 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1477 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9074 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1197 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9896 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.28 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.63 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|24 - A|501 A|1000 - A|9001 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.2440 -23.6960 65.3999 REMARK 3 T TENSOR REMARK 3 T11: -0.0519 T22: -0.1633 REMARK 3 T33: -0.1418 T12: -0.0688 REMARK 3 T13: 0.1219 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4809 L22: 0.8446 REMARK 3 L33: 2.1952 L12: -0.1186 REMARK 3 L13: -0.5650 L23: 0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.0911 S13: -0.2763 REMARK 3 S21: 0.1896 S22: 0.0962 S23: 0.1704 REMARK 3 S31: 0.4173 S32: -0.4157 S33: 0.1482 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|502 - A|552 } REMARK 3 ORIGIN FOR THE GROUP (A): -26.7491 -18.3879 93.2957 REMARK 3 T TENSOR REMARK 3 T11: -0.0054 T22: 0.3040 REMARK 3 T33: -0.3040 T12: -0.1012 REMARK 3 T13: 0.1520 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 3.6899 L22: 0.0054 REMARK 3 L33: 1.0612 L12: 0.7924 REMARK 3 L13: -2.8180 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.1243 S13: -0.0323 REMARK 3 S21: -0.0399 S22: -0.0450 S23: 0.2045 REMARK 3 S31: 0.0866 S32: -0.0917 S33: 0.0723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|553 - A|648 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.6636 -1.3135 110.8440 REMARK 3 T TENSOR REMARK 3 T11: -0.1606 T22: 0.3040 REMARK 3 T33: -0.3040 T12: 0.0560 REMARK 3 T13: 0.1487 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.1067 L22: 1.9117 REMARK 3 L33: 5.8620 L12: 0.0182 REMARK 3 L13: -2.6066 L23: 1.4913 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.3073 S13: 0.0486 REMARK 3 S21: -0.0690 S22: -0.0626 S23: -0.0134 REMARK 3 S31: -0.1129 S32: 0.2651 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|23 - B|487 B|2000 - B|2002 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.7015 -20.8264 29.0035 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: -0.2040 REMARK 3 T33: -0.0105 T12: -0.0669 REMARK 3 T13: 0.0616 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.9115 L22: 0.6769 REMARK 3 L33: 2.1222 L12: -0.2421 REMARK 3 L13: -0.5875 L23: 0.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: -0.0624 S13: 0.2267 REMARK 3 S21: -0.0310 S22: 0.1278 S23: -0.0563 REMARK 3 S31: 0.0047 S32: -0.0844 S33: -0.1860 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|488 - B|533 } REMARK 3 ORIGIN FOR THE GROUP (A): 54.6079 -19.1792 9.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: -0.0086 REMARK 3 T33: -0.0241 T12: -0.0655 REMARK 3 T13: 0.1520 T23: -0.1304 REMARK 3 L TENSOR REMARK 3 L11: 3.7005 L22: 0.1263 REMARK 3 L33: 5.6079 L12: 0.1975 REMARK 3 L13: -0.2292 L23: 2.8967 REMARK 3 S TENSOR REMARK 3 S11: 0.0792 S12: 0.0960 S13: 0.0674 REMARK 3 S21: 0.0993 S22: -0.0502 S23: -0.2456 REMARK 3 S31: 0.0205 S32: 0.2600 S33: -0.0290 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS,0.2 M CALCIUM ACETATE, 6% REMARK 280 V/V GLYCEROL, 20% PEG3000, PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 241.05950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 241.05950 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.71800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 41.52750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.71800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE NATIVE FORM HUMAN SEMAPHORIN 4D EXISTS AS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 SER A 220 REMARK 465 PRO A 221 REMARK 465 ASP A 222 REMARK 465 SER A 223 REMARK 465 PRO A 224 REMARK 465 ASP A 225 REMARK 465 LYS A 556 REMARK 465 SER A 557 REMARK 465 LYS A 558 REMARK 465 GLY A 559 REMARK 465 SER A 560 REMARK 465 VAL A 649 REMARK 465 PRO A 650 REMARK 465 LYS A 651 REMARK 465 PRO A 652 REMARK 465 VAL A 653 REMARK 465 VAL A 654 REMARK 465 ALA A 655 REMARK 465 PRO A 656 REMARK 465 THR A 657 REMARK 465 LEU A 658 REMARK 465 SER A 659 REMARK 465 VAL A 660 REMARK 465 VAL A 661 REMARK 465 GLN A 662 REMARK 465 THR A 663 REMARK 465 GLU A 664 REMARK 465 GLY A 665 REMARK 465 SER A 666 REMARK 465 ARG A 667 REMARK 465 ILE A 668 REMARK 465 ALA A 669 REMARK 465 THR A 670 REMARK 465 LYS A 671 REMARK 465 VAL A 672 REMARK 465 LEU A 673 REMARK 465 VAL A 674 REMARK 465 ALA A 675 REMARK 465 SER A 676 REMARK 465 THR A 677 REMARK 465 LYS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 GLU B 17 REMARK 465 THR B 18 REMARK 465 GLY B 19 REMARK 465 LEU B 20 REMARK 465 GLN B 21 REMARK 465 PRO B 22 REMARK 465 ARG B 175 REMARK 465 GLY B 176 REMARK 465 VAL B 177 REMARK 465 ARG B 285 REMARK 465 GLU B 286 REMARK 465 VAL B 287 REMARK 465 PRO B 303 REMARK 465 THR B 304 REMARK 465 VAL B 305 REMARK 465 GLY B 306 REMARK 465 ARG B 307 REMARK 465 ARG B 516 REMARK 465 GLY B 517 REMARK 465 GLN B 518 REMARK 465 GLY B 519 REMARK 465 LEU B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 THR B 537 REMARK 465 LYS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 334 O5 NAG H 1 2.00 REMARK 500 ND2 ASN A 419 O5 NAG F 1 2.02 REMARK 500 ND2 ASN A 191 O5 NAG G 1 2.07 REMARK 500 ND2 ASN A 49 O5 NAG C 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 351 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 26 -168.65 -67.23 REMARK 500 SER A 56 -179.98 -66.81 REMARK 500 LYS A 59 -2.94 68.30 REMARK 500 ALA A 66 -164.55 -114.93 REMARK 500 ASN A 77 75.52 -159.13 REMARK 500 TRP A 87 65.61 -152.89 REMARK 500 THR A 106 -79.31 -114.12 REMARK 500 CYS A 108 46.22 -85.06 REMARK 500 ASN A 149 60.92 36.64 REMARK 500 THR A 177 -161.38 -166.08 REMARK 500 SER A 193 -44.52 84.01 REMARK 500 ASP A 285 -5.22 -58.84 REMARK 500 ASN A 409 28.75 48.70 REMARK 500 LEU A 454 -167.31 -69.37 REMARK 500 GLU A 455 96.83 -61.44 REMARK 500 CYS A 503 -38.31 -34.46 REMARK 500 HIS A 533 37.07 76.43 REMARK 500 GLN A 534 -59.49 -159.27 REMARK 500 GLU A 536 56.62 -103.72 REMARK 500 GLU A 616 -57.36 -22.85 REMARK 500 LYS A 631 -92.12 -119.58 REMARK 500 THR B 43 -70.17 -60.10 REMARK 500 VAL B 83 99.97 -66.86 REMARK 500 GLN B 116 14.94 59.46 REMARK 500 ASN B 146 32.73 -80.93 REMARK 500 PRO B 148 -147.93 -67.78 REMARK 500 ALA B 149 -13.88 54.41 REMARK 500 GLU B 201 32.74 -78.64 REMARK 500 GLU B 202 -27.53 69.60 REMARK 500 SER B 215 71.36 45.44 REMARK 500 ALA B 226 30.83 -94.69 REMARK 500 ARG B 242 27.55 48.69 REMARK 500 ALA B 347 106.80 60.23 REMARK 500 THR B 351 136.43 153.15 REMARK 500 GLU B 352 75.12 77.15 REMARK 500 ASN B 361 69.70 -67.24 REMARK 500 GLN B 448 106.36 -166.80 REMARK 500 ASP B 456 39.08 -67.53 REMARK 500 SER B 481 33.88 -142.08 REMARK 500 PRO B 529 -74.43 -73.48 REMARK 500 LEU B 531 -179.86 73.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKT RELATED DB: PDB REMARK 900 MOUSE PLEXIN A2, EXTRACELLULAR DOMAINS 1-4 REMARK 900 RELATED ID: 1OLZ RELATED DB: PDB REMARK 900 SOLUBLE EXTRACELLULAR FRAGMENT, RESIDUES 22-677 OF SEMA4D DBREF 3OL2 A 22 677 UNP Q92854 SEM4D_HUMAN 22 677 DBREF 3OL2 B 20 535 UNP O43157 PLXB1_HUMAN 20 535 SEQADV 3OL2 LYS A 678 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 679 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 680 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 681 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 682 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 683 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 HIS A 684 UNP Q92854 EXPRESSION TAG SEQADV 3OL2 GLU B 17 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 THR B 18 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 GLY B 19 UNP O43157 CLONING ARTIFACT SEQADV 3OL2 GLY B 536 UNP O43157 EXPRESSION TAG SEQADV 3OL2 THR B 537 UNP O43157 EXPRESSION TAG SEQADV 3OL2 LYS B 538 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 539 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 540 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 541 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 542 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 543 UNP O43157 EXPRESSION TAG SEQADV 3OL2 HIS B 544 UNP O43157 EXPRESSION TAG SEQRES 1 A 663 MET ALA PHE ALA PRO ILE PRO ARG ILE THR TRP GLU HIS SEQRES 2 A 663 ARG GLU VAL HIS LEU VAL GLN PHE HIS GLU PRO ASP ILE SEQRES 3 A 663 TYR ASN TYR SER ALA LEU LEU LEU SER GLU ASP LYS ASP SEQRES 4 A 663 THR LEU TYR ILE GLY ALA ARG GLU ALA VAL PHE ALA VAL SEQRES 5 A 663 ASN ALA LEU ASN ILE SER GLU LYS GLN HIS GLU VAL TYR SEQRES 6 A 663 TRP LYS VAL SER GLU ASP LYS LYS ALA LYS CYS ALA GLU SEQRES 7 A 663 LYS GLY LYS SER LYS GLN THR GLU CYS LEU ASN TYR ILE SEQRES 8 A 663 ARG VAL LEU GLN PRO LEU SER ALA THR SER LEU TYR VAL SEQRES 9 A 663 CYS GLY THR ASN ALA PHE GLN PRO ALA CYS ASP HIS LEU SEQRES 10 A 663 ASN LEU THR SER PHE LYS PHE LEU GLY LYS ASN GLU ASP SEQRES 11 A 663 GLY LYS GLY ARG CYS PRO PHE ASP PRO ALA HIS SER TYR SEQRES 12 A 663 THR SER VAL MET VAL ASP GLY GLU LEU TYR SER GLY THR SEQRES 13 A 663 SER TYR ASN PHE LEU GLY SER GLU PRO ILE ILE SER ARG SEQRES 14 A 663 ASN SER SER HIS SER PRO LEU ARG THR GLU TYR ALA ILE SEQRES 15 A 663 PRO TRP LEU ASN GLU PRO SER PHE VAL PHE ALA ASP VAL SEQRES 16 A 663 ILE ARG LYS SER PRO ASP SER PRO ASP GLY GLU ASP ASP SEQRES 17 A 663 ARG VAL TYR PHE PHE PHE THR GLU VAL SER VAL GLU TYR SEQRES 18 A 663 GLU PHE VAL PHE ARG VAL LEU ILE PRO ARG ILE ALA ARG SEQRES 19 A 663 VAL CYS LYS GLY ASP GLN GLY GLY LEU ARG THR LEU GLN SEQRES 20 A 663 LYS LYS TRP THR SER PHE LEU LYS ALA ARG LEU ILE CYS SEQRES 21 A 663 SER ARG PRO ASP SER GLY LEU VAL PHE ASN VAL LEU ARG SEQRES 22 A 663 ASP VAL PHE VAL LEU ARG SER PRO GLY LEU LYS VAL PRO SEQRES 23 A 663 VAL PHE TYR ALA LEU PHE THR PRO GLN LEU ASN ASN VAL SEQRES 24 A 663 GLY LEU SER ALA VAL CYS ALA TYR ASN LEU SER THR ALA SEQRES 25 A 663 GLU GLU VAL PHE SER HIS GLY LYS TYR MET GLN SER THR SEQRES 26 A 663 THR VAL GLU GLN SER HIS THR LYS TRP VAL ARG TYR ASN SEQRES 27 A 663 GLY PRO VAL PRO LYS PRO ARG PRO GLY ALA CYS ILE ASP SEQRES 28 A 663 SER GLU ALA ARG ALA ALA ASN TYR THR SER SER LEU ASN SEQRES 29 A 663 LEU PRO ASP LYS THR LEU GLN PHE VAL LYS ASP HIS PRO SEQRES 30 A 663 LEU MET ASP ASP SER VAL THR PRO ILE ASP ASN ARG PRO SEQRES 31 A 663 ARG LEU ILE LYS LYS ASP VAL ASN TYR THR GLN ILE VAL SEQRES 32 A 663 VAL ASP ARG THR GLN ALA LEU ASP GLY THR VAL TYR ASP SEQRES 33 A 663 VAL MET PHE VAL SER THR ASP ARG GLY ALA LEU HIS LYS SEQRES 34 A 663 ALA ILE SER LEU GLU HIS ALA VAL HIS ILE ILE GLU GLU SEQRES 35 A 663 THR GLN LEU PHE GLN ASP PHE GLU PRO VAL GLN THR LEU SEQRES 36 A 663 LEU LEU SER SER LYS LYS GLY ASN ARG PHE VAL TYR ALA SEQRES 37 A 663 GLY SER ASN SER GLY VAL VAL GLN ALA PRO LEU ALA PHE SEQRES 38 A 663 CYS GLY LYS HIS GLY THR CYS GLU ASP CYS VAL LEU ALA SEQRES 39 A 663 ARG ASP PRO TYR CYS ALA TRP SER PRO PRO THR ALA THR SEQRES 40 A 663 CYS VAL ALA LEU HIS GLN THR GLU SER PRO SER ARG GLY SEQRES 41 A 663 LEU ILE GLN GLU MET SER GLY ASP ALA SER VAL CYS PRO SEQRES 42 A 663 ASP LYS SER LYS GLY SER TYR ARG GLN HIS PHE PHE LYS SEQRES 43 A 663 HIS GLY GLY THR ALA GLU LEU LYS CYS SER GLN LYS SER SEQRES 44 A 663 ASN LEU ALA ARG VAL PHE TRP LYS PHE GLN ASN GLY VAL SEQRES 45 A 663 LEU LYS ALA GLU SER PRO LYS TYR GLY LEU MET GLY ARG SEQRES 46 A 663 LYS ASN LEU LEU ILE PHE ASN LEU SER GLU GLY ASP SER SEQRES 47 A 663 GLY VAL TYR GLN CYS LEU SER GLU GLU ARG VAL LYS ASN SEQRES 48 A 663 LYS THR VAL PHE GLN VAL VAL ALA LYS HIS VAL LEU GLU SEQRES 49 A 663 VAL LYS VAL VAL PRO LYS PRO VAL VAL ALA PRO THR LEU SEQRES 50 A 663 SER VAL VAL GLN THR GLU GLY SER ARG ILE ALA THR LYS SEQRES 51 A 663 VAL LEU VAL ALA SER THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 528 GLU THR GLY LEU GLN PRO LEU PRO PRO THR ALA PHE THR SEQRES 2 B 528 PRO ASN GLY THR TYR LEU GLN HIS LEU ALA ARG ASP PRO SEQRES 3 B 528 THR SER GLY THR LEU TYR LEU GLY ALA THR ASN PHE LEU SEQRES 4 B 528 PHE GLN LEU SER PRO GLY LEU GLN LEU GLU ALA THR VAL SEQRES 5 B 528 SER THR GLY PRO VAL LEU ASP SER ARG ASP CYS LEU PRO SEQRES 6 B 528 PRO VAL MET PRO ASP GLU CYS PRO GLN ALA GLN PRO THR SEQRES 7 B 528 ASN ASN PRO ASN GLN LEU LEU LEU VAL SER PRO GLY ALA SEQRES 8 B 528 LEU VAL VAL CYS GLY SER VAL HIS GLN GLY VAL CYS GLU SEQRES 9 B 528 GLN ARG ARG LEU GLY GLN LEU GLU GLN LEU LEU LEU ARG SEQRES 10 B 528 PRO GLU ARG PRO GLY ASP THR GLN TYR VAL ALA ALA ASN SEQRES 11 B 528 ASP PRO ALA VAL SER THR VAL GLY LEU VAL ALA GLN GLY SEQRES 12 B 528 LEU ALA GLY GLU PRO LEU LEU PHE VAL GLY ARG GLY TYR SEQRES 13 B 528 THR SER ARG GLY VAL GLY GLY GLY ILE PRO PRO ILE THR SEQRES 14 B 528 THR ARG ALA LEU TRP PRO PRO ASP PRO GLN ALA ALA PHE SEQRES 15 B 528 SER TYR GLU GLU THR ALA LYS LEU ALA VAL GLY ARG LEU SEQRES 16 B 528 SER GLU TYR SER HIS HIS PHE VAL SER ALA PHE ALA ARG SEQRES 17 B 528 GLY ALA SER ALA TYR PHE LEU PHE LEU ARG ARG ASP LEU SEQRES 18 B 528 GLN ALA GLN SER ARG ALA PHE ARG ALA TYR VAL SER ARG SEQRES 19 B 528 VAL CYS LEU ARG ASP GLN HIS TYR TYR SER TYR VAL GLU SEQRES 20 B 528 LEU PRO LEU ALA CYS GLU GLY GLY ARG TYR GLY LEU ILE SEQRES 21 B 528 GLN ALA ALA ALA VAL ALA THR SER ARG GLU VAL ALA HIS SEQRES 22 B 528 GLY GLU VAL LEU PHE ALA ALA PHE SER SER ALA ALA PRO SEQRES 23 B 528 PRO THR VAL GLY ARG PRO PRO SER ALA ALA ALA GLY ALA SEQRES 24 B 528 SER GLY ALA SER ALA LEU CYS ALA PHE PRO LEU ASP GLU SEQRES 25 B 528 VAL ASP ARG LEU ALA ASN ARG THR ARG ASP ALA CYS TYR SEQRES 26 B 528 THR ARG GLU GLY ARG ALA GLU ASP GLY THR GLU VAL ALA SEQRES 27 B 528 TYR ILE GLU TYR ASP VAL ASN SER ASP CYS ALA GLN LEU SEQRES 28 B 528 PRO VAL ASP THR LEU ASP ALA TYR PRO CYS GLY SER ASP SEQRES 29 B 528 HIS THR PRO SER PRO MET ALA SER ARG VAL PRO LEU GLU SEQRES 30 B 528 ALA THR PRO ILE LEU GLU TRP PRO GLY ILE GLN LEU THR SEQRES 31 B 528 ALA VAL ALA VAL THR MET GLU ASP GLY HIS THR ILE ALA SEQRES 32 B 528 PHE LEU GLY ASP SER GLN GLY GLN LEU HIS ARG VAL TYR SEQRES 33 B 528 LEU GLY PRO GLY SER ASP GLY HIS PRO TYR SER THR GLN SEQRES 34 B 528 SER ILE GLN GLN GLY SER ALA VAL SER ARG ASP LEU THR SEQRES 35 B 528 PHE ASP GLY THR PHE GLU HIS LEU TYR VAL MET THR GLN SEQRES 36 B 528 SER THR LEU LEU LYS VAL PRO VAL ALA SER CYS ALA GLN SEQRES 37 B 528 HIS LEU ASP CYS ALA SER CYS LEU ALA HIS ARG ASP PRO SEQRES 38 B 528 TYR CYS GLY TRP CYS VAL LEU LEU GLY ARG CYS SER ARG SEQRES 39 B 528 ARG SER GLU CYS SER ARG GLY GLN GLY PRO GLU GLN TRP SEQRES 40 B 528 LEU TRP SER PHE GLN PRO GLU LEU GLY CYS LEU GLN GLY SEQRES 41 B 528 THR LYS HIS HIS HIS HIS HIS HIS MODRES 3OL2 ASN B 334 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 49 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 329 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 419 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 77 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 139 ASN GLYCOSYLATION SITE MODRES 3OL2 ASN A 191 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET NAG A3000 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) HELIX 1 1 GLU A 33 VAL A 37 5 5 HELIX 2 2 SER A 90 GLU A 99 1 10 HELIX 3 3 PRO A 284 GLY A 287 5 4 HELIX 4 4 LEU A 330 GLY A 340 1 11 HELIX 5 5 ASP A 372 ALA A 378 1 7 HELIX 6 6 SER A 382 LEU A 386 5 5 HELIX 7 7 PRO A 387 HIS A 397 1 11 HELIX 8 8 PRO A 406 ARG A 410 5 5 HELIX 9 9 PHE A 502 HIS A 506 5 5 HELIX 10 10 THR A 508 ALA A 515 1 8 HELIX 11 11 PRO A 538 LEU A 542 5 5 HELIX 12 12 ASP A 549 CYS A 553 5 5 HELIX 13 13 SER A 615 SER A 619 5 5 HELIX 14 14 VAL B 114 GLY B 117 5 4 HELIX 15 15 GLY B 138 TYR B 142 5 5 HELIX 16 16 ASP B 193 ALA B 197 5 5 HELIX 17 17 ARG B 210 SER B 215 1 6 HELIX 18 18 ALA B 313 GLY B 317 5 5 HELIX 19 19 LEU B 326 ARG B 343 1 18 HELIX 20 20 ASP B 370 TYR B 375 1 6 HELIX 21 21 SER B 481 HIS B 485 5 5 HELIX 22 22 ASP B 487 HIS B 494 1 8 HELIX 23 23 ARG B 510 CYS B 514 5 5 SHEET 1 A 5 THR A 31 TRP A 32 0 SHEET 2 A 5 ALA A 457 GLN A 465 1 O GLU A 463 N TRP A 32 SHEET 3 A 5 ALA A 447 LEU A 454 -1 N ILE A 452 O HIS A 459 SHEET 4 A 5 VAL A 435 THR A 443 -1 N VAL A 441 O HIS A 449 SHEET 5 A 5 TYR A 420 GLN A 429 -1 N ASP A 426 O VAL A 438 SHEET 1 B 4 VAL A 40 PHE A 42 0 SHEET 2 B 4 VAL A 495 ALA A 498 -1 O VAL A 495 N PHE A 42 SHEET 3 B 4 PHE A 486 GLY A 490 -1 N VAL A 487 O ALA A 498 SHEET 4 B 4 THR A 475 SER A 479 -1 N SER A 479 O PHE A 486 SHEET 1 C 4 ALA A 52 LEU A 55 0 SHEET 2 C 4 THR A 61 GLY A 65 -1 O TYR A 63 N LEU A 54 SHEET 3 C 4 ALA A 69 ASN A 74 -1 O VAL A 73 N LEU A 62 SHEET 4 C 4 LYS A 81 TYR A 86 -1 O VAL A 85 N VAL A 70 SHEET 1 D 4 ILE A 112 PRO A 117 0 SHEET 2 D 4 SER A 122 GLY A 127 -1 O TYR A 124 N GLN A 116 SHEET 3 D 4 ALA A 134 ASN A 139 -1 O ASP A 136 N VAL A 125 SHEET 4 D 4 LYS A 144 PHE A 145 -1 O LYS A 144 N ASN A 139 SHEET 1 E 4 ILE A 112 PRO A 117 0 SHEET 2 E 4 SER A 122 GLY A 127 -1 O TYR A 124 N GLN A 116 SHEET 3 E 4 ALA A 134 ASN A 139 -1 O ASP A 136 N VAL A 125 SHEET 4 E 4 GLU A 150 ASP A 151 -1 O GLU A 150 N CYS A 135 SHEET 1 F 4 THR A 165 VAL A 169 0 SHEET 2 F 4 GLU A 172 SER A 178 -1 O TYR A 174 N VAL A 167 SHEET 3 F 4 PRO A 186 ASN A 191 -1 O SER A 189 N SER A 175 SHEET 4 F 4 LEU A 197 ARG A 198 -1 O LEU A 197 N ARG A 190 SHEET 1 G 4 SER A 210 ILE A 217 0 SHEET 2 G 4 ARG A 230 VAL A 238 -1 O ARG A 230 N ILE A 217 SHEET 3 G 4 LEU A 249 CYS A 257 -1 O ARG A 252 N PHE A 235 SHEET 4 G 4 LEU A 275 ARG A 278 -1 O ALA A 277 N ILE A 253 SHEET 1 H 2 SER A 282 ARG A 283 0 SHEET 2 H 2 LEU A 288 VAL A 289 -1 O LEU A 288 N ARG A 283 SHEET 1 I 4 VAL A 292 LEU A 299 0 SHEET 2 I 4 VAL A 308 THR A 314 -1 O LEU A 312 N ARG A 294 SHEET 3 I 4 LEU A 322 ASN A 329 -1 O CYS A 326 N ALA A 311 SHEET 4 I 4 LEU A 413 LYS A 416 -1 O LYS A 415 N SER A 323 SHEET 1 J 2 MET A 343 VAL A 348 0 SHEET 2 J 2 HIS A 352 ARG A 357 -1 O VAL A 356 N GLN A 344 SHEET 1 K 2 CYS A 520 SER A 523 0 SHEET 2 K 2 THR A 528 ALA A 531 -1 O VAL A 530 N ALA A 521 SHEET 1 L 5 ARG A 562 PHE A 566 0 SHEET 2 L 5 THR A 634 VAL A 646 1 O VAL A 643 N HIS A 564 SHEET 3 L 5 GLY A 620 ARG A 629 -1 N GLY A 620 O LEU A 644 SHEET 4 L 5 ARG A 584 PHE A 589 -1 N PHE A 586 O LEU A 625 SHEET 5 L 5 GLY A 592 VAL A 593 -1 O GLY A 592 N PHE A 589 SHEET 1 M 3 ALA A 572 LEU A 574 0 SHEET 2 M 3 ASN A 608 ILE A 611 -1 O LEU A 609 N LEU A 574 SHEET 3 M 3 TYR A 601 MET A 604 -1 N MET A 604 O ASN A 608 SHEET 1 N 4 ALA B 27 PHE B 28 0 SHEET 2 N 4 LEU B 474 PRO B 478 -1 O LEU B 474 N PHE B 28 SHEET 3 N 4 HIS B 465 MET B 469 -1 N LEU B 466 O VAL B 477 SHEET 4 N 4 THR B 458 PHE B 459 -1 N THR B 458 O TYR B 467 SHEET 1 O 4 LEU B 35 ARG B 40 0 SHEET 2 O 4 LEU B 47 ALA B 51 -1 O GLY B 50 N GLN B 36 SHEET 3 O 4 PHE B 54 LEU B 58 -1 O PHE B 54 N ALA B 51 SHEET 4 O 4 LEU B 64 SER B 69 -1 O GLU B 65 N GLN B 57 SHEET 1 P 2 VAL B 73 ASP B 75 0 SHEET 2 P 2 GLN B 92 THR B 94 -1 O THR B 94 N VAL B 73 SHEET 1 Q 4 ASN B 98 VAL B 103 0 SHEET 2 Q 4 ALA B 107 GLY B 112 -1 O VAL B 109 N LEU B 102 SHEET 3 Q 4 CYS B 119 ARG B 123 -1 O ARG B 122 N LEU B 108 SHEET 4 Q 4 GLN B 126 LEU B 132 -1 O LEU B 131 N GLN B 121 SHEET 1 R 3 THR B 152 GLN B 158 0 SHEET 2 R 3 PRO B 164 ARG B 170 -1 O LEU B 165 N ALA B 157 SHEET 3 R 3 ILE B 184 ALA B 188 -1 O ARG B 187 N LEU B 166 SHEET 1 S 6 HIS B 217 ARG B 224 0 SHEET 2 S 6 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 S 6 PHE B 244 CYS B 252 -1 O ARG B 245 N ARG B 234 SHEET 4 S 6 VAL B 262 ALA B 267 -1 O LEU B 264 N VAL B 248 SHEET 5 S 6 MET B 386 SER B 388 1 O SER B 388 N GLU B 263 SHEET 6 S 6 ALA B 354 ILE B 356 -1 N TYR B 355 O ALA B 387 SHEET 1 T 5 HIS B 217 ARG B 224 0 SHEET 2 T 5 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 T 5 PHE B 244 CYS B 252 -1 O ARG B 245 N ARG B 234 SHEET 4 T 5 VAL B 262 ALA B 267 -1 O LEU B 264 N VAL B 248 SHEET 5 T 5 LEU B 392 GLU B 393 1 O LEU B 392 N PRO B 265 SHEET 1 U 8 LEU B 398 TRP B 400 0 SHEET 2 U 8 SER B 319 PRO B 325 -1 N SER B 319 O TRP B 400 SHEET 3 U 8 VAL B 292 SER B 298 -1 N ALA B 295 O CYS B 322 SHEET 4 U 8 LEU B 275 THR B 283 -1 N GLN B 277 O ALA B 296 SHEET 5 U 8 LEU B 405 GLU B 413 1 O VAL B 410 N THR B 283 SHEET 6 U 8 HIS B 416 ASP B 423 -1 O PHE B 420 N ALA B 409 SHEET 7 U 8 GLN B 427 TYR B 432 -1 O VAL B 431 N ALA B 419 SHEET 8 U 8 SER B 443 SER B 446 -1 O SER B 443 N ARG B 430 SHEET 1 V 3 ARG B 507 SER B 509 0 SHEET 2 V 3 GLY B 500 CYS B 502 -1 N GLY B 500 O SER B 509 SHEET 3 V 3 TRP B 523 TRP B 525 -1 O LEU B 524 N TRP B 501 SSBOND 1 CYS A 97 CYS A 108 1555 1555 2.03 SSBOND 2 CYS A 126 CYS A 135 1555 1555 2.04 SSBOND 3 CYS A 257 CYS A 370 1555 1555 2.04 SSBOND 4 CYS A 281 CYS A 326 1555 1555 2.06 SSBOND 5 CYS A 503 CYS A 520 1555 1555 2.04 SSBOND 6 CYS A 509 CYS A 553 1555 1555 2.04 SSBOND 7 CYS A 512 CYS A 529 1555 1555 2.04 SSBOND 8 CYS A 576 CYS A 624 1555 1555 2.03 SSBOND 9 CYS B 79 CYS B 88 1555 1555 2.03 SSBOND 10 CYS B 111 CYS B 119 1555 1555 2.04 SSBOND 11 CYS B 252 CYS B 377 1555 1555 2.05 SSBOND 12 CYS B 268 CYS B 322 1555 1555 2.06 SSBOND 13 CYS B 340 CYS B 364 1555 1555 2.07 SSBOND 14 CYS B 482 CYS B 499 1555 1555 2.05 SSBOND 15 CYS B 488 CYS B 533 1555 1555 2.04 SSBOND 16 CYS B 491 CYS B 508 1555 1555 2.06 SSBOND 17 CYS B 502 CYS B 514 1555 1555 2.03 LINK ND2 ASN A 49 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 77 C1 NAG A3000 1555 1555 1.47 LINK ND2 ASN A 139 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN A 191 C1 NAG G 1 1555 1555 1.48 LINK ND2 ASN A 329 C1 NAG E 1 1555 1555 1.41 LINK ND2 ASN A 419 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN B 334 C1 NAG H 1 1555 1555 1.37 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.49 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.52 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.48 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.48 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.48 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.42 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 CISPEP 1 VAL A 320 GLY A 321 0 0.67 CISPEP 2 GLU A 349 GLN A 350 0 -16.32 CISPEP 3 LYS A 364 PRO A 365 0 -0.51 CISPEP 4 SER A 598 PRO A 599 0 4.48 CISPEP 5 GLY B 71 PRO B 72 0 -2.22 CISPEP 6 PRO B 81 PRO B 82 0 -1.27 CISPEP 7 CYS B 268 GLU B 269 0 -9.94 CISPEP 8 GLU B 348 ASP B 349 0 0.93 CISPEP 9 GLY B 350 THR B 351 0 -4.27 CISPEP 10 SER B 384 PRO B 385 0 -1.46 CISPEP 11 LEU B 531 GLY B 532 0 5.09 CRYST1 83.055 173.436 482.119 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002074 0.00000