PDB Short entry for 3OMP HEADER PROTEIN BINDING 27-AUG-10 3OMP TITLE FRAGMENT-BASED DESIGN OF NOVEL ESTROGEN RECEPTOR LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 261-500); COMPND 5 SYNONYM: ER-BETA, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: BOX 2 (UNP RESIDUES 683-701); COMPND 11 SYNONYM: NCOA-1, STEROID RECEPTOR COACTIVATOR 1, SRC-1, RIP160, COMPND 12 PROTEIN HIN-2, RENAL CARCINOMA ANTIGEN NY-REN-52, CLASS E BASIC COMPND 13 HELIX-LOOP-HELIX PROTEIN 74, BHLHE74; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR2, ESTRB, NR3A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS STEROID BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.MOECKLINGHOFF,W.A.VAN OTTERLO,R.ROSE,S.FUCHS,M.DOMINGUEZ SEOANE, AUTHOR 2 H.WALDMANN,C.OTTMANN,L.BRUNSVELD REVDAT 3 21-FEB-24 3OMP 1 REMARK REVDAT 2 20-APR-11 3OMP 1 JRNL REVDAT 1 16-MAR-11 3OMP 0 JRNL AUTH W.A.VAN OTTERLO,R.ROSE,S.FUCHS,T.J.ZIMMERMANN, JRNL AUTH 2 M.DOMINGUEZ SEOANE,H.WALDMANN,C.OTTMANN,L.BRUNSVELD JRNL TITL DESIGN AND EVALUATION OF FRAGMENT-LIKE ESTROGEN RECEPTOR JRNL TITL 2 TETRAHYDROISOQUINOLINE LIGANDS FROM A SCAFFOLD-DETECTION JRNL TITL 3 APPROACH. JRNL REF J.MED.CHEM. V. 54 2005 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21381753 JRNL DOI 10.1021/JM1011116 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3869 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5234 ; 1.943 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 6.251 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;42.908 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 746 ;17.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2739 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2377 ; 1.567 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3843 ; 2.555 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 4.521 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1391 ; 6.534 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3869 ; 2.547 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 1000 4 REMARK 3 1 B 1 B 1000 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1745 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1745 ; 0.960 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3OMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 17% PEG10000 (V/V), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.60333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.20667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 LEU A 263 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 HIS A 498 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 ASP B 261 REMARK 465 ALA B 262 REMARK 465 LEU B 263 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 465 ASP B 421 REMARK 465 SER B 422 REMARK 465 SER B 423 REMARK 465 ARG B 424 REMARK 465 ASN B 496 REMARK 465 ALA B 497 REMARK 465 HIS B 498 REMARK 465 VAL B 499 REMARK 465 LEU B 500 REMARK 465 LEU C -2 REMARK 465 THR C -1 REMARK 465 GLU C 0 REMARK 465 GLU C 11 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 465 PRO C 14 REMARK 465 SER C 15 REMARK 465 ASP C 16 REMARK 465 LEU D -2 REMARK 465 THR D -1 REMARK 465 GLU D 0 REMARK 465 GLU D 11 REMARK 465 GLY D 12 REMARK 465 SER D 13 REMARK 465 PRO D 14 REMARK 465 SER D 15 REMARK 465 ASP D 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 LYS D 3 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 470 OD1 ASN B 470 1.43 REMARK 500 O MET A 410 O TYR A 411 1.70 REMARK 500 O SER A 463 NH1 ARG B 466 1.82 REMARK 500 N LYS B 425 O HOH B 177 1.92 REMARK 500 CB GLN B 267 O HOH B 124 1.97 REMARK 500 O HOH A 22 O HOH A 514 1.99 REMARK 500 OE2 GLU A 332 NE2 HIS C 2 2.02 REMARK 500 NH1 ARG A 329 O MET A 410 2.02 REMARK 500 SD MET B 309 O HOH B 109 2.04 REMARK 500 OE2 GLU A 305 OAB W14 A 1 2.07 REMARK 500 OE1 GLU B 305 OAB W14 B 1 2.10 REMARK 500 O HOH A 503 O HOH A 536 2.11 REMARK 500 NH2 ARG B 329 O TYR B 411 2.12 REMARK 500 O HOH B 124 O HOH B 516 2.13 REMARK 500 OE2 GLU B 332 NE2 HIS D 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 485 CB VAL A 485 CG1 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 364 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 284 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 284 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 454 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 454 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 407 50.83 -94.84 REMARK 500 TYR A 411 135.91 24.70 REMARK 500 LYS A 482 2.04 -58.75 REMARK 500 ASN A 483 35.54 36.27 REMARK 500 ASP A 489 -123.16 55.62 REMARK 500 ASN B 407 50.73 -96.60 REMARK 500 SER B 409 123.62 -38.10 REMARK 500 PRO B 412 125.70 -31.99 REMARK 500 ASN B 483 38.69 34.36 REMARK 500 VAL B 485 121.57 -171.20 REMARK 500 ASP B 489 -126.70 54.50 REMARK 500 ARG D 7 -72.93 -54.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W14 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W14 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OLS RELATED DB: PDB REMARK 900 SAME STRUCTURE WITH ESTROGEN REMARK 900 RELATED ID: 3OLM RELATED DB: PDB REMARK 900 SAME STRUCTURE WITH ESTROGEN AND PHOSPHORYLATED REMARK 900 RELATED ID: 3OMO RELATED DB: PDB REMARK 900 SAME STRUCTURE WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3OMQ RELATED DB: PDB REMARK 900 SAME STRUCTURE WITH DIFFERENT LIGAND DBREF 3OMP A 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 3OMP B 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 3OMP C -2 16 UNP Q15788 NCOA1_HUMAN 683 701 DBREF 3OMP D -2 16 UNP Q15788 NCOA1_HUMAN 683 701 SEQRES 1 A 240 ASP ALA LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU SEQRES 2 A 240 GLU ALA GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER SEQRES 3 A 240 ALA PRO PHE THR GLU ALA SER MET MET MET SER LEU THR SEQRES 4 A 240 LYS LEU ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP SEQRES 5 A 240 ALA LYS LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE SEQRES 6 A 240 ASP GLN VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL SEQRES 7 A 240 LEU MET MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO SEQRES 8 A 240 GLY LYS LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG SEQRES 9 A 240 ASP GLU GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE SEQRES 10 A 240 ASP MET LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU SEQRES 11 A 240 LYS LEU GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET SEQRES 12 A 240 ILE LEU LEU ASN SER SER MET TYR PRO LEU VAL THR ALA SEQRES 13 A 240 THR GLN ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU SEQRES 14 A 240 LEU ASN ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA SEQRES 15 A 240 LYS SER GLY ILE SER SER GLN GLN GLN SER MET ARG LEU SEQRES 16 A 240 ALA ASN LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SEQRES 17 A 240 SER ASN LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS SEQRES 18 A 240 LYS ASN VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET SEQRES 19 A 240 LEU ASN ALA HIS VAL LEU SEQRES 1 B 240 ASP ALA LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU SEQRES 2 B 240 GLU ALA GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER SEQRES 3 B 240 ALA PRO PHE THR GLU ALA SER MET MET MET SER LEU THR SEQRES 4 B 240 LYS LEU ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP SEQRES 5 B 240 ALA LYS LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE SEQRES 6 B 240 ASP GLN VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL SEQRES 7 B 240 LEU MET MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO SEQRES 8 B 240 GLY LYS LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG SEQRES 9 B 240 ASP GLU GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE SEQRES 10 B 240 ASP MET LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU SEQRES 11 B 240 LYS LEU GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET SEQRES 12 B 240 ILE LEU LEU ASN SER SER MET TYR PRO LEU VAL THR ALA SEQRES 13 B 240 THR GLN ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU SEQRES 14 B 240 LEU ASN ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA SEQRES 15 B 240 LYS SER GLY ILE SER SER GLN GLN GLN SER MET ARG LEU SEQRES 16 B 240 ALA ASN LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SEQRES 17 B 240 SER ASN LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS SEQRES 18 B 240 LYS ASN VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET SEQRES 19 B 240 LEU ASN ALA HIS VAL LEU SEQRES 1 C 19 LEU THR GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 2 C 19 GLU GLY SER PRO SER ASP SEQRES 1 D 19 LEU THR GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 2 D 19 GLU GLY SER PRO SER ASP HET W14 A 1 17 HET W14 B 1 17 HETNAM W14 2-(TRIFLUOROACETYL)-1,2,3,4-TETRAHYDROISOQUINOLIN-7-OL FORMUL 5 W14 2(C11 H10 F3 N O2) FORMUL 7 HOH *333(H2 O) HELIX 1 1 SER A 264 GLU A 276 1 13 HELIX 2 2 THR A 290 LYS A 314 1 25 HELIX 3 3 GLY A 318 LEU A 322 5 5 HELIX 4 4 SER A 323 ILE A 348 1 26 HELIX 5 5 ASP A 365 VAL A 370 5 6 HELIX 6 6 GLY A 372 LYS A 391 1 20 HELIX 7 7 GLN A 393 ASN A 407 1 15 HELIX 8 8 ASP A 421 LYS A 443 1 23 HELIX 9 9 SER A 447 LYS A 482 1 36 HELIX 10 10 TYR A 488 ALA A 497 1 10 HELIX 11 11 SER B 264 GLU B 276 1 13 HELIX 12 12 THR B 290 LYS B 315 1 26 HELIX 13 13 GLY B 318 LEU B 322 5 5 HELIX 14 14 SER B 323 ILE B 348 1 26 HELIX 15 15 ASP B 365 VAL B 370 5 6 HELIX 16 16 GLY B 372 LEU B 390 1 19 HELIX 17 17 GLN B 393 ASN B 407 1 15 HELIX 18 18 LYS B 425 LYS B 443 1 19 HELIX 19 19 SER B 447 LEU B 461 1 15 HELIX 20 20 LEU B 461 LYS B 482 1 22 HELIX 21 21 TYR B 488 LEU B 495 1 8 HELIX 22 22 HIS C 2 GLN C 10 1 9 HELIX 23 23 HIS D 2 GLN D 10 1 9 SHEET 1 A 2 LYS A 353 ALA A 357 0 SHEET 2 A 2 LEU A 360 ASP A 363 -1 O LEU A 362 N LEU A 354 SHEET 1 B 2 LYS B 353 ALA B 357 0 SHEET 2 B 2 LEU B 360 ASP B 363 -1 O LEU B 362 N LEU B 354 SITE 1 AC1 8 LEU A 298 LEU A 301 ALA A 302 GLU A 305 SITE 2 AC1 8 LEU A 339 PHE A 356 ILE A 373 GLY A 472 SITE 1 AC2 8 LEU B 298 LEU B 301 ALA B 302 GLU B 305 SITE 2 AC2 8 LEU B 339 MET B 340 ILE B 373 GLY B 472 CRYST1 70.720 70.720 109.810 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014140 0.008164 0.000000 0.00000 SCALE2 0.000000 0.016328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009107 0.00000