PDB Short entry for 3OQ5 HEADER TRANSCRIPTION 02-SEP-10 3OQ5 TITLE CRYSTAL STRUCTURE OF THE 3-MBT DOMAIN FROM HUMAN L3MBTL1 IN COMPLEX TITLE 2 WITH P53K382ME1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: MBT REPEATS RESIDUES 191-530; COMPND 5 SYNONYM: L(3)MBT-LIKE, H-L(3)MBT PROTEIN, H-L(3)MBT, L(3)MBT PROTEIN COMPND 6 HOMOLOG, L3MBTL1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 10 CHAIN: D, E; COMPND 11 FRAGMENT: C-TERMINAL RESIDUES 377-386; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L3MBTL, KIAA0681, L3MBT, L3MBTL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX6P1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: SYNTHETIC CONSTRUCT KEYWDS L(3)MBT-LIKE PROTEIN, PROTEIN LYSINE METHYLTRANSFERASE; MALIGNANT KEYWDS 2 BRAIN TUMOR, CHROMATIN REGULATOR, DNA-BINDING, METAL-BINDING, KEYWDS 3 NUCLEUS, REPRESSOR, TRANSCRIPTION REGULATION, ZINC-FINGER, KEYWDS 4 CHROMOSOMAL PROTEIN, METHYLATION, THREE-LEAVED BETA-PROPELLER, KEYWDS 5 TRANSCRIPTION, P53 EXPDTA X-RAY DIFFRACTION AUTHOR S.ROY,L.E.WEST,K.L.WEINER,R.HAYASHI,X.SHI,E.APPELLA,O.GOZANI, AUTHOR 2 T.KUTATELADZE REVDAT 4 06-SEP-23 3OQ5 1 SEQADV REVDAT 3 08-DEC-10 3OQ5 1 JRNL REVDAT 2 13-OCT-10 3OQ5 1 JRNL REVDAT 1 22-SEP-10 3OQ5 0 JRNL AUTH L.E.WEST,S.ROY,K.LACHMI-WEINER,R.HAYASHI,X.SHI,E.APPELLA, JRNL AUTH 2 T.G.KUTATELADZE,O.GOZANI JRNL TITL THE MBT REPEATS OF L3MBTL1 LINK SET8-MEDIATED P53 JRNL TITL 2 METHYLATION AT LYSINE 382 TO TARGET GENE REPRESSION. JRNL REF J.BIOL.CHEM. V. 285 37725 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20870725 JRNL DOI 10.1074/JBC.M110.139527 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5929 - 6.1539 0.95 2629 130 0.2032 0.2520 REMARK 3 2 6.1539 - 4.8898 0.94 2609 153 0.1764 0.2215 REMARK 3 3 4.8898 - 4.2732 0.95 2613 132 0.1477 0.1912 REMARK 3 4 4.2732 - 3.8832 0.95 2628 139 0.1547 0.1934 REMARK 3 5 3.8832 - 3.6053 0.95 2615 143 0.1652 0.1813 REMARK 3 6 3.6053 - 3.3930 0.95 2638 134 0.1881 0.2108 REMARK 3 7 3.3930 - 3.2232 0.95 2610 135 0.1973 0.2518 REMARK 3 8 3.2232 - 3.0830 0.94 2624 154 0.2340 0.2245 REMARK 3 9 3.0830 - 2.9644 0.95 2614 131 0.2639 0.2451 REMARK 3 10 2.9644 - 2.8622 0.95 2636 133 0.2825 0.2977 REMARK 3 11 2.8622 - 2.7727 0.95 2614 125 0.3045 0.2836 REMARK 3 12 2.7727 - 2.6935 0.95 2661 146 0.3138 0.3109 REMARK 3 13 2.6935 - 2.6226 0.95 2568 139 0.3241 0.3869 REMARK 3 14 2.6226 - 2.5587 0.95 2656 141 0.3185 0.3724 REMARK 3 15 2.5587 - 2.5005 0.95 2625 151 0.3154 0.3336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.18100 REMARK 3 B22 (A**2) : 6.18100 REMARK 3 B33 (A**2) : -12.36190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7841 REMARK 3 ANGLE : 0.781 10714 REMARK 3 CHIRALITY : 0.055 1070 REMARK 3 PLANARITY : 0.004 1397 REMARK 3 DIHEDRAL : 14.180 2796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 206:309 OR RESSEQ REMARK 3 314:518 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 206:309 OR RESSEQ REMARK 3 314:518 ) REMARK 3 ATOM PAIRS NUMBER : 2509 REMARK 3 RMSD : 0.087 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 206:309 OR RESSEQ REMARK 3 314:518 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 206:309 OR RESSEQ REMARK 3 314:518 ) REMARK 3 ATOM PAIRS NUMBER : 2509 REMARK 3 RMSD : 0.086 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.651 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.28 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.8, 4% PEG REMARK 280 4000 AND 0.1 M SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 GLU A 191 REMARK 465 TRP A 192 REMARK 465 SER A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 GLN A 196 REMARK 465 PRO A 197 REMARK 465 ALA A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 465 GLU A 204 REMARK 465 CYS A 205 REMARK 465 LYS A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 GLU A 313 REMARK 465 GLY A 519 REMARK 465 PRO A 520 REMARK 465 ARG A 521 REMARK 465 GLU A 522 REMARK 465 PRO A 523 REMARK 465 SER A 524 REMARK 465 SER A 525 REMARK 465 ALA A 526 REMARK 465 SER A 527 REMARK 465 PRO A 528 REMARK 465 GLY A 529 REMARK 465 GLY A 530 REMARK 465 GLY B 186 REMARK 465 PRO B 187 REMARK 465 LEU B 188 REMARK 465 GLY B 189 REMARK 465 SER B 190 REMARK 465 GLU B 191 REMARK 465 TRP B 192 REMARK 465 SER B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 GLN B 196 REMARK 465 PRO B 197 REMARK 465 ALA B 198 REMARK 465 THR B 199 REMARK 465 GLY B 200 REMARK 465 GLU B 201 REMARK 465 LYS B 202 REMARK 465 LYS B 203 REMARK 465 GLU B 204 REMARK 465 CYS B 205 REMARK 465 LYS B 310 REMARK 465 GLU B 311 REMARK 465 GLU B 312 REMARK 465 GLU B 313 REMARK 465 GLY B 519 REMARK 465 PRO B 520 REMARK 465 ARG B 521 REMARK 465 GLU B 522 REMARK 465 PRO B 523 REMARK 465 SER B 524 REMARK 465 SER B 525 REMARK 465 ALA B 526 REMARK 465 SER B 527 REMARK 465 PRO B 528 REMARK 465 GLY B 529 REMARK 465 GLY B 530 REMARK 465 GLY C 186 REMARK 465 PRO C 187 REMARK 465 LEU C 188 REMARK 465 GLY C 189 REMARK 465 SER C 190 REMARK 465 GLU C 191 REMARK 465 TRP C 192 REMARK 465 SER C 193 REMARK 465 SER C 194 REMARK 465 SER C 195 REMARK 465 GLN C 196 REMARK 465 PRO C 197 REMARK 465 ALA C 198 REMARK 465 THR C 199 REMARK 465 GLY C 200 REMARK 465 GLU C 201 REMARK 465 LYS C 202 REMARK 465 LYS C 203 REMARK 465 GLU C 204 REMARK 465 CYS C 205 REMARK 465 LYS C 310 REMARK 465 GLU C 311 REMARK 465 GLU C 312 REMARK 465 GLU C 313 REMARK 465 GLY C 519 REMARK 465 PRO C 520 REMARK 465 ARG C 521 REMARK 465 GLU C 522 REMARK 465 PRO C 523 REMARK 465 SER C 524 REMARK 465 SER C 525 REMARK 465 ALA C 526 REMARK 465 SER C 527 REMARK 465 PRO C 528 REMARK 465 GLY C 529 REMARK 465 GLY C 530 REMARK 465 THR D 377 REMARK 465 SER D 378 REMARK 465 ARG D 379 REMARK 465 HIS D 380 REMARK 465 LYS D 381 REMARK 465 LEU D 383 REMARK 465 MET D 384 REMARK 465 PHE D 385 REMARK 465 LYS D 386 REMARK 465 THR E 377 REMARK 465 SER E 378 REMARK 465 ARG E 379 REMARK 465 HIS E 380 REMARK 465 LYS E 381 REMARK 465 LEU E 383 REMARK 465 MET E 384 REMARK 465 PHE E 385 REMARK 465 LYS E 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 251 85.31 -150.85 REMARK 500 PRO A 252 1.07 -63.22 REMARK 500 ASN A 286 34.36 -96.37 REMARK 500 LYS A 307 120.24 -27.60 REMARK 500 ASP A 372 -110.27 61.43 REMARK 500 ASN A 381 -9.78 72.15 REMARK 500 ASP A 383 -159.65 -70.81 REMARK 500 ASP A 418 73.34 68.22 REMARK 500 ASN A 452 -21.04 84.14 REMARK 500 ASN A 462 88.80 -175.39 REMARK 500 GLU A 475 -158.80 -128.06 REMARK 500 HIS B 251 83.92 -150.97 REMARK 500 PRO B 252 1.19 -62.86 REMARK 500 GLU B 262 135.92 -170.06 REMARK 500 ASN B 286 34.02 -95.72 REMARK 500 LYS B 307 120.34 -27.77 REMARK 500 GLN B 336 22.71 -141.16 REMARK 500 ASP B 372 -113.77 59.96 REMARK 500 ASN B 381 -9.99 72.58 REMARK 500 ASP B 383 -159.88 -70.97 REMARK 500 ASP B 418 73.23 68.55 REMARK 500 ASN B 452 -20.94 84.89 REMARK 500 ASN B 462 88.64 -175.32 REMARK 500 GLU B 475 -159.44 -128.43 REMARK 500 HIS C 251 84.47 -151.83 REMARK 500 PRO C 252 1.64 -63.24 REMARK 500 GLU C 262 134.90 -170.69 REMARK 500 ASN C 286 34.88 -95.16 REMARK 500 LYS C 307 123.82 -29.27 REMARK 500 ASP C 372 -114.06 61.35 REMARK 500 ASN C 381 -9.14 72.17 REMARK 500 ASP C 383 -159.65 -69.60 REMARK 500 ASP C 418 73.68 68.44 REMARK 500 ASN C 452 -20.84 83.73 REMARK 500 ASN C 462 88.94 -176.39 REMARK 500 GLU C 475 -159.52 -128.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 3OQ5 A 191 530 UNP Q9Y468 LMBL1_HUMAN 191 530 DBREF 3OQ5 B 191 530 UNP Q9Y468 LMBL1_HUMAN 191 530 DBREF 3OQ5 C 191 530 UNP Q9Y468 LMBL1_HUMAN 191 530 DBREF 3OQ5 D 377 386 UNP Q5U0E4 Q5U0E4_HUMAN 377 386 DBREF 3OQ5 E 377 386 UNP Q5U0E4 Q5U0E4_HUMAN 377 386 SEQADV 3OQ5 GLY A 186 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 PRO A 187 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 LEU A 188 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 GLY A 189 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 SER A 190 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 GLY B 186 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 PRO B 187 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 LEU B 188 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 GLY B 189 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 SER B 190 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 GLY C 186 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 PRO C 187 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 LEU C 188 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 GLY C 189 UNP Q9Y468 EXPRESSION TAG SEQADV 3OQ5 SER C 190 UNP Q9Y468 EXPRESSION TAG SEQRES 1 A 345 GLY PRO LEU GLY SER GLU TRP SER SER SER GLN PRO ALA SEQRES 2 A 345 THR GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SER TYR SEQRES 3 A 345 LEU GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SER LEU SEQRES 4 A 345 PHE GLN ASP SER GLN ALA VAL THR HIS ASN LYS ASN GLY SEQRES 5 A 345 PHE LYS LEU GLY MET LYS LEU GLU GLY ILE ASP PRO GLN SEQRES 6 A 345 HIS PRO SER MET TYR PHE ILE LEU THR VAL ALA GLU VAL SEQRES 7 A 345 CYS GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY TYR SER SEQRES 8 A 345 GLU CYS HIS ASP PHE TRP VAL ASN ALA ASN SER PRO ASP SEQRES 9 A 345 ILE HIS PRO ALA GLY TRP PHE GLU LYS THR GLY HIS LYS SEQRES 10 A 345 LEU GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU PHE SER SEQRES 11 A 345 TRP SER GLN TYR LEU ARG SER THR ARG ALA GLN ALA ALA SEQRES 12 A 345 PRO LYS HIS LEU PHE VAL SER GLN SER HIS SER PRO PRO SEQRES 13 A 345 PRO LEU GLY PHE GLN VAL GLY MET LYS LEU GLU ALA VAL SEQRES 14 A 345 ASP ARG MET ASN PRO SER LEU VAL CYS VAL ALA SER VAL SEQRES 15 A 345 THR ASP VAL VAL ASP SER ARG PHE LEU VAL HIS PHE ASP SEQRES 16 A 345 ASN TRP ASP ASP THR TYR ASP TYR TRP CYS ASP PRO SER SEQRES 17 A 345 SER PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN LYS GLN SEQRES 18 A 345 GLY LYS PRO LEU THR PRO PRO GLN ASP TYR PRO ASP PRO SEQRES 19 A 345 ASP ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU THR GLY SEQRES 20 A 345 ALA SER ALA VAL PRO THR TRP ALA PHE LYS VAL ARG PRO SEQRES 21 A 345 PRO HIS SER PHE LEU VAL ASN MET LYS LEU GLU ALA VAL SEQRES 22 A 345 ASP ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SER VAL SEQRES 23 A 345 GLU ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS PHE ASP SEQRES 24 A 345 GLY TRP SER HIS GLY TYR ASP PHE TRP ILE ASP ALA ASP SEQRES 25 A 345 HIS PRO ASP ILE HIS PRO ALA GLY TRP CYS SER LYS THR SEQRES 26 A 345 GLY HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG GLU PRO SEQRES 27 A 345 SER SER ALA SER PRO GLY GLY SEQRES 1 B 345 GLY PRO LEU GLY SER GLU TRP SER SER SER GLN PRO ALA SEQRES 2 B 345 THR GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SER TYR SEQRES 3 B 345 LEU GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SER LEU SEQRES 4 B 345 PHE GLN ASP SER GLN ALA VAL THR HIS ASN LYS ASN GLY SEQRES 5 B 345 PHE LYS LEU GLY MET LYS LEU GLU GLY ILE ASP PRO GLN SEQRES 6 B 345 HIS PRO SER MET TYR PHE ILE LEU THR VAL ALA GLU VAL SEQRES 7 B 345 CYS GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY TYR SER SEQRES 8 B 345 GLU CYS HIS ASP PHE TRP VAL ASN ALA ASN SER PRO ASP SEQRES 9 B 345 ILE HIS PRO ALA GLY TRP PHE GLU LYS THR GLY HIS LYS SEQRES 10 B 345 LEU GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU PHE SER SEQRES 11 B 345 TRP SER GLN TYR LEU ARG SER THR ARG ALA GLN ALA ALA SEQRES 12 B 345 PRO LYS HIS LEU PHE VAL SER GLN SER HIS SER PRO PRO SEQRES 13 B 345 PRO LEU GLY PHE GLN VAL GLY MET LYS LEU GLU ALA VAL SEQRES 14 B 345 ASP ARG MET ASN PRO SER LEU VAL CYS VAL ALA SER VAL SEQRES 15 B 345 THR ASP VAL VAL ASP SER ARG PHE LEU VAL HIS PHE ASP SEQRES 16 B 345 ASN TRP ASP ASP THR TYR ASP TYR TRP CYS ASP PRO SER SEQRES 17 B 345 SER PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN LYS GLN SEQRES 18 B 345 GLY LYS PRO LEU THR PRO PRO GLN ASP TYR PRO ASP PRO SEQRES 19 B 345 ASP ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU THR GLY SEQRES 20 B 345 ALA SER ALA VAL PRO THR TRP ALA PHE LYS VAL ARG PRO SEQRES 21 B 345 PRO HIS SER PHE LEU VAL ASN MET LYS LEU GLU ALA VAL SEQRES 22 B 345 ASP ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SER VAL SEQRES 23 B 345 GLU ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS PHE ASP SEQRES 24 B 345 GLY TRP SER HIS GLY TYR ASP PHE TRP ILE ASP ALA ASP SEQRES 25 B 345 HIS PRO ASP ILE HIS PRO ALA GLY TRP CYS SER LYS THR SEQRES 26 B 345 GLY HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG GLU PRO SEQRES 27 B 345 SER SER ALA SER PRO GLY GLY SEQRES 1 C 345 GLY PRO LEU GLY SER GLU TRP SER SER SER GLN PRO ALA SEQRES 2 C 345 THR GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SER TYR SEQRES 3 C 345 LEU GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SER LEU SEQRES 4 C 345 PHE GLN ASP SER GLN ALA VAL THR HIS ASN LYS ASN GLY SEQRES 5 C 345 PHE LYS LEU GLY MET LYS LEU GLU GLY ILE ASP PRO GLN SEQRES 6 C 345 HIS PRO SER MET TYR PHE ILE LEU THR VAL ALA GLU VAL SEQRES 7 C 345 CYS GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY TYR SER SEQRES 8 C 345 GLU CYS HIS ASP PHE TRP VAL ASN ALA ASN SER PRO ASP SEQRES 9 C 345 ILE HIS PRO ALA GLY TRP PHE GLU LYS THR GLY HIS LYS SEQRES 10 C 345 LEU GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU PHE SER SEQRES 11 C 345 TRP SER GLN TYR LEU ARG SER THR ARG ALA GLN ALA ALA SEQRES 12 C 345 PRO LYS HIS LEU PHE VAL SER GLN SER HIS SER PRO PRO SEQRES 13 C 345 PRO LEU GLY PHE GLN VAL GLY MET LYS LEU GLU ALA VAL SEQRES 14 C 345 ASP ARG MET ASN PRO SER LEU VAL CYS VAL ALA SER VAL SEQRES 15 C 345 THR ASP VAL VAL ASP SER ARG PHE LEU VAL HIS PHE ASP SEQRES 16 C 345 ASN TRP ASP ASP THR TYR ASP TYR TRP CYS ASP PRO SER SEQRES 17 C 345 SER PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN LYS GLN SEQRES 18 C 345 GLY LYS PRO LEU THR PRO PRO GLN ASP TYR PRO ASP PRO SEQRES 19 C 345 ASP ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU THR GLY SEQRES 20 C 345 ALA SER ALA VAL PRO THR TRP ALA PHE LYS VAL ARG PRO SEQRES 21 C 345 PRO HIS SER PHE LEU VAL ASN MET LYS LEU GLU ALA VAL SEQRES 22 C 345 ASP ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SER VAL SEQRES 23 C 345 GLU ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS PHE ASP SEQRES 24 C 345 GLY TRP SER HIS GLY TYR ASP PHE TRP ILE ASP ALA ASP SEQRES 25 C 345 HIS PRO ASP ILE HIS PRO ALA GLY TRP CYS SER LYS THR SEQRES 26 C 345 GLY HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG GLU PRO SEQRES 27 C 345 SER SER ALA SER PRO GLY GLY SEQRES 1 D 10 THR SER ARG HIS LYS MLZ LEU MET PHE LYS SEQRES 1 E 10 THR SER ARG HIS LYS MLZ LEU MET PHE LYS MODRES 3OQ5 MLZ D 382 LYS N-METHYL-LYSINE MODRES 3OQ5 MLZ E 382 LYS N-METHYL-LYSINE HET MLZ D 382 10 HET MLZ E 382 10 HETNAM MLZ N-METHYL-LYSINE FORMUL 4 MLZ 2(C7 H16 N2 O2) FORMUL 6 HOH *496(H2 O) HELIX 1 1 SER A 207 LYS A 216 1 10 HELIX 2 2 PRO A 221 PHE A 225 5 5 HELIX 3 3 GLN A 226 VAL A 231 1 6 HELIX 4 4 GLY A 294 GLY A 300 1 7 HELIX 5 5 SER A 315 THR A 323 1 9 HELIX 6 6 PRO A 329 PHE A 333 5 5 HELIX 7 7 GLY A 401 GLY A 407 1 7 HELIX 8 8 CYS A 423 THR A 431 1 9 HELIX 9 9 SER A 487 ASP A 491 5 5 HELIX 10 10 GLY A 505 GLY A 511 1 7 HELIX 11 11 SER B 207 LYS B 216 1 10 HELIX 12 12 PRO B 221 PHE B 225 5 5 HELIX 13 13 GLN B 226 VAL B 231 1 6 HELIX 14 14 GLY B 294 GLY B 300 1 7 HELIX 15 15 SER B 315 THR B 323 1 9 HELIX 16 16 PRO B 329 PHE B 333 5 5 HELIX 17 17 CYS B 423 THR B 431 1 9 HELIX 18 18 SER B 487 ASP B 491 5 5 HELIX 19 19 GLY B 505 GLY B 511 1 7 HELIX 20 20 SER C 207 LYS C 216 1 10 HELIX 21 21 PRO C 221 PHE C 225 5 5 HELIX 22 22 GLN C 226 VAL C 231 1 6 HELIX 23 23 GLY C 294 THR C 299 1 6 HELIX 24 24 SER C 315 THR C 323 1 9 HELIX 25 25 PRO C 329 PHE C 333 5 5 HELIX 26 26 GLY C 401 GLY C 407 1 7 HELIX 27 27 CYS C 423 THR C 431 1 9 HELIX 28 28 SER C 487 ASP C 491 5 5 HELIX 29 29 GLY C 505 GLY C 511 1 7 SHEET 1 A 5 PHE A 281 ASN A 284 0 SHEET 2 A 5 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 A 5 HIS A 251 CYS A 264 -1 N GLU A 262 O ARG A 269 SHEET 4 A 5 LYS A 243 ASP A 248 -1 N GLY A 246 O PHE A 256 SHEET 5 A 5 ILE A 290 HIS A 291 -1 O HIS A 291 N GLU A 245 SHEET 1 B 4 PHE A 281 ASN A 284 0 SHEET 2 B 4 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 B 4 HIS A 251 CYS A 264 -1 N GLU A 262 O ARG A 269 SHEET 4 B 4 LEU A 303 GLN A 304 1 O GLN A 304 N TYR A 255 SHEET 1 C 5 TYR A 388 CYS A 390 0 SHEET 2 C 5 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 C 5 VAL A 362 VAL A 371 -1 N SER A 366 O HIS A 378 SHEET 4 C 5 LYS A 350 VAL A 354 -1 N ALA A 353 O CYS A 363 SHEET 5 C 5 ILE A 397 HIS A 398 -1 O HIS A 398 N GLU A 352 SHEET 1 D 5 PHE A 492 ASP A 495 0 SHEET 2 D 5 ARG A 478 PHE A 483 -1 N ILE A 481 O PHE A 492 SHEET 3 D 5 ILE A 466 VAL A 474 -1 N GLU A 472 O LYS A 480 SHEET 4 D 5 LYS A 454 VAL A 458 -1 N LEU A 455 O ALA A 469 SHEET 5 D 5 ILE A 501 HIS A 502 -1 O HIS A 502 N GLU A 456 SHEET 1 E 5 PHE B 281 ASN B 284 0 SHEET 2 E 5 ARG B 267 PHE B 272 -1 N LEU B 270 O PHE B 281 SHEET 3 E 5 HIS B 251 CYS B 264 -1 N GLU B 262 O ARG B 269 SHEET 4 E 5 LYS B 243 ASP B 248 -1 N LEU B 244 O LEU B 258 SHEET 5 E 5 ILE B 290 HIS B 291 -1 O HIS B 291 N GLU B 245 SHEET 1 F 4 PHE B 281 ASN B 284 0 SHEET 2 F 4 ARG B 267 PHE B 272 -1 N LEU B 270 O PHE B 281 SHEET 3 F 4 HIS B 251 CYS B 264 -1 N GLU B 262 O ARG B 269 SHEET 4 F 4 LEU B 303 GLN B 304 1 O GLN B 304 N TYR B 255 SHEET 1 G 5 TYR B 388 CYS B 390 0 SHEET 2 G 5 ARG B 374 PHE B 379 -1 N VAL B 377 O TYR B 388 SHEET 3 G 5 VAL B 362 VAL B 371 -1 N SER B 366 O HIS B 378 SHEET 4 G 5 LYS B 350 VAL B 354 -1 N ALA B 353 O CYS B 363 SHEET 5 G 5 ILE B 397 HIS B 398 -1 O HIS B 398 N GLU B 352 SHEET 1 H 5 PHE B 492 ASP B 495 0 SHEET 2 H 5 ARG B 478 PHE B 483 -1 N ILE B 481 O PHE B 492 SHEET 3 H 5 ILE B 466 VAL B 474 -1 N GLU B 472 O LYS B 480 SHEET 4 H 5 LYS B 454 VAL B 458 -1 N LEU B 455 O ALA B 469 SHEET 5 H 5 ILE B 501 HIS B 502 -1 O HIS B 502 N GLU B 456 SHEET 1 I 5 PHE C 281 ASN C 284 0 SHEET 2 I 5 ARG C 267 PHE C 272 -1 N LEU C 270 O PHE C 281 SHEET 3 I 5 HIS C 251 CYS C 264 -1 N GLU C 262 O ARG C 269 SHEET 4 I 5 LYS C 243 ASP C 248 -1 N LEU C 244 O LEU C 258 SHEET 5 I 5 ILE C 290 HIS C 291 -1 O HIS C 291 N GLU C 245 SHEET 1 J 4 PHE C 281 ASN C 284 0 SHEET 2 J 4 ARG C 267 PHE C 272 -1 N LEU C 270 O PHE C 281 SHEET 3 J 4 HIS C 251 CYS C 264 -1 N GLU C 262 O ARG C 269 SHEET 4 J 4 LEU C 303 GLN C 304 1 O GLN C 304 N TYR C 255 SHEET 1 K 5 TYR C 388 CYS C 390 0 SHEET 2 K 5 ARG C 374 PHE C 379 -1 N VAL C 377 O TYR C 388 SHEET 3 K 5 VAL C 362 VAL C 371 -1 N SER C 366 O HIS C 378 SHEET 4 K 5 LYS C 350 VAL C 354 -1 N ALA C 353 O CYS C 363 SHEET 5 K 5 ILE C 397 HIS C 398 -1 O HIS C 398 N GLU C 352 SHEET 1 L 5 PHE C 492 ASP C 495 0 SHEET 2 L 5 ARG C 478 PHE C 483 -1 N ILE C 481 O PHE C 492 SHEET 3 L 5 ILE C 466 VAL C 474 -1 N GLU C 472 O LYS C 480 SHEET 4 L 5 LYS C 454 VAL C 458 -1 N LEU C 455 O ALA C 469 SHEET 5 L 5 ILE C 501 HIS C 502 -1 O HIS C 502 N GLU C 456 CRYST1 109.080 109.080 90.050 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009168 0.005293 0.000000 0.00000 SCALE2 0.000000 0.010586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011105 0.00000