PDB Short entry for 3ORH HEADER TRANSFERASE 07-SEP-10 3ORH TITLE HUMAN GUANIDINOACETATE N-METHYLTRANSFERASE WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANIDINOACETATE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.1.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GAMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS GUANIDINOACETATE N-METHYLTRANSFERASE, TRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.WU,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 06-SEP-23 3ORH 1 REMARK REVDAT 1 15-SEP-10 3ORH 0 SPRSDE 15-SEP-10 3ORH 1ZX0 JRNL AUTH H.WU,A.DONG,H.ZENG,P.LOPPNAU,M.SUNDSTROM,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN GUANIDINOACETATE JRNL TITL 2 N-METHYLTRANSFERASE WITH SAH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 97237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5532 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2315 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5480 REMARK 3 BIN R VALUE (WORKING SET) : 0.2317 REMARK 3 BIN FREE R VALUE : 0.2145 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 52 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 981 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71030 REMARK 3 B22 (A**2) : -0.71030 REMARK 3 B33 (A**2) : 1.42050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.234 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7515 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 10260 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 2466 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 153 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 1091 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 7515 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 955 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9345 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ORH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9766 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 37.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.70000 REMARK 200 R SYM (I) : 0.70000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG3350, 0.1M CACL2, 0.1M TRIS, REMARK 280 1MM GUANIDINE HCL, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.70667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.35333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.70667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 4 REMARK 465 SER C 5 REMARK 465 ALA C 6 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 PRO D 4 REMARK 465 SER D 5 REMARK 465 ALA D 6 REMARK 465 THR D 7 REMARK 465 PRO D 8 REMARK 465 ILE D 9 REMARK 465 PHE D 10 REMARK 465 ALA D 11 REMARK 465 PRO D 12 REMARK 465 GLY D 13 REMARK 465 GLU D 14 REMARK 465 ASN D 15 REMARK 465 CYS D 16 REMARK 465 SER D 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 7 CG2 REMARK 470 LYS B 60 CE NZ REMARK 470 LYS B 114 CE NZ REMARK 470 MET B 188 CE REMARK 470 LYS C 60 CE NZ REMARK 470 ARG C 105 CZ NH1 NH2 REMARK 470 LYS C 181 NZ REMARK 470 LYS D 60 CE NZ REMARK 470 LYS D 114 NZ REMARK 470 GLU D 142 CD OE1 OE2 REMARK 470 LYS D 181 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 49 O HOH B 727 1.86 REMARK 500 CD1 LEU D 34 O HOH D 720 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 136 -134.04 -104.16 REMARK 500 HIS A 155 -45.89 -133.91 REMARK 500 SER A 180 -57.42 -128.04 REMARK 500 LEU A 214 114.67 -161.58 REMARK 500 THR B 136 -140.35 -105.13 REMARK 500 HIS B 155 -46.67 -134.04 REMARK 500 ASN B 170 84.94 -150.73 REMARK 500 SER B 180 -74.29 -117.08 REMARK 500 LEU B 214 116.65 -160.32 REMARK 500 THR C 136 -136.90 -103.37 REMARK 500 HIS C 155 -45.19 -133.34 REMARK 500 ASN C 170 81.10 -153.47 REMARK 500 SER C 180 -50.26 -132.27 REMARK 500 LEU C 214 115.84 -161.69 REMARK 500 THR D 136 -152.91 -106.10 REMARK 500 HIS D 155 -45.66 -133.30 REMARK 500 SER D 180 -59.08 -128.84 REMARK 500 LEU D 214 115.25 -161.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH D 4003 DBREF 3ORH A 1 236 UNP Q14353 GAMT_HUMAN 1 236 DBREF 3ORH B 1 236 UNP Q14353 GAMT_HUMAN 1 236 DBREF 3ORH C 1 236 UNP Q14353 GAMT_HUMAN 1 236 DBREF 3ORH D 1 236 UNP Q14353 GAMT_HUMAN 1 236 SEQRES 1 A 236 MET SER ALA PRO SER ALA THR PRO ILE PHE ALA PRO GLY SEQRES 2 A 236 GLU ASN CYS SER PRO ALA TRP GLY ALA ALA PRO ALA ALA SEQRES 3 A 236 TYR ASP ALA ALA ASP THR HIS LEU ARG ILE LEU GLY LYS SEQRES 4 A 236 PRO VAL MET GLU ARG TRP GLU THR PRO TYR MET HIS ALA SEQRES 5 A 236 LEU ALA ALA ALA ALA SER SER LYS GLY GLY ARG VAL LEU SEQRES 6 A 236 GLU VAL GLY PHE GLY MET ALA ILE ALA ALA SER LYS VAL SEQRES 7 A 236 GLN GLU ALA PRO ILE ASP GLU HIS TRP ILE ILE GLU CYS SEQRES 8 A 236 ASN ASP GLY VAL PHE GLN ARG LEU ARG ASP TRP ALA PRO SEQRES 9 A 236 ARG GLN THR HIS LYS VAL ILE PRO LEU LYS GLY LEU TRP SEQRES 10 A 236 GLU ASP VAL ALA PRO THR LEU PRO ASP GLY HIS PHE ASP SEQRES 11 A 236 GLY ILE LEU TYR ASP THR TYR PRO LEU SER GLU GLU THR SEQRES 12 A 236 TRP HIS THR HIS GLN PHE ASN PHE ILE LYS ASN HIS ALA SEQRES 13 A 236 PHE ARG LEU LEU LYS PRO GLY GLY VAL LEU THR TYR CYS SEQRES 14 A 236 ASN LEU THR SER TRP GLY GLU LEU MET LYS SER LYS TYR SEQRES 15 A 236 SER ASP ILE THR ILE MET PHE GLU GLU THR GLN VAL PRO SEQRES 16 A 236 ALA LEU LEU GLU ALA GLY PHE ARG ARG GLU ASN ILE ARG SEQRES 17 A 236 THR GLU VAL MET ALA LEU VAL PRO PRO ALA ASP CYS ARG SEQRES 18 A 236 TYR TYR ALA PHE PRO GLN MET ILE THR PRO LEU VAL THR SEQRES 19 A 236 LYS GLY SEQRES 1 B 236 MET SER ALA PRO SER ALA THR PRO ILE PHE ALA PRO GLY SEQRES 2 B 236 GLU ASN CYS SER PRO ALA TRP GLY ALA ALA PRO ALA ALA SEQRES 3 B 236 TYR ASP ALA ALA ASP THR HIS LEU ARG ILE LEU GLY LYS SEQRES 4 B 236 PRO VAL MET GLU ARG TRP GLU THR PRO TYR MET HIS ALA SEQRES 5 B 236 LEU ALA ALA ALA ALA SER SER LYS GLY GLY ARG VAL LEU SEQRES 6 B 236 GLU VAL GLY PHE GLY MET ALA ILE ALA ALA SER LYS VAL SEQRES 7 B 236 GLN GLU ALA PRO ILE ASP GLU HIS TRP ILE ILE GLU CYS SEQRES 8 B 236 ASN ASP GLY VAL PHE GLN ARG LEU ARG ASP TRP ALA PRO SEQRES 9 B 236 ARG GLN THR HIS LYS VAL ILE PRO LEU LYS GLY LEU TRP SEQRES 10 B 236 GLU ASP VAL ALA PRO THR LEU PRO ASP GLY HIS PHE ASP SEQRES 11 B 236 GLY ILE LEU TYR ASP THR TYR PRO LEU SER GLU GLU THR SEQRES 12 B 236 TRP HIS THR HIS GLN PHE ASN PHE ILE LYS ASN HIS ALA SEQRES 13 B 236 PHE ARG LEU LEU LYS PRO GLY GLY VAL LEU THR TYR CYS SEQRES 14 B 236 ASN LEU THR SER TRP GLY GLU LEU MET LYS SER LYS TYR SEQRES 15 B 236 SER ASP ILE THR ILE MET PHE GLU GLU THR GLN VAL PRO SEQRES 16 B 236 ALA LEU LEU GLU ALA GLY PHE ARG ARG GLU ASN ILE ARG SEQRES 17 B 236 THR GLU VAL MET ALA LEU VAL PRO PRO ALA ASP CYS ARG SEQRES 18 B 236 TYR TYR ALA PHE PRO GLN MET ILE THR PRO LEU VAL THR SEQRES 19 B 236 LYS GLY SEQRES 1 C 236 MET SER ALA PRO SER ALA THR PRO ILE PHE ALA PRO GLY SEQRES 2 C 236 GLU ASN CYS SER PRO ALA TRP GLY ALA ALA PRO ALA ALA SEQRES 3 C 236 TYR ASP ALA ALA ASP THR HIS LEU ARG ILE LEU GLY LYS SEQRES 4 C 236 PRO VAL MET GLU ARG TRP GLU THR PRO TYR MET HIS ALA SEQRES 5 C 236 LEU ALA ALA ALA ALA SER SER LYS GLY GLY ARG VAL LEU SEQRES 6 C 236 GLU VAL GLY PHE GLY MET ALA ILE ALA ALA SER LYS VAL SEQRES 7 C 236 GLN GLU ALA PRO ILE ASP GLU HIS TRP ILE ILE GLU CYS SEQRES 8 C 236 ASN ASP GLY VAL PHE GLN ARG LEU ARG ASP TRP ALA PRO SEQRES 9 C 236 ARG GLN THR HIS LYS VAL ILE PRO LEU LYS GLY LEU TRP SEQRES 10 C 236 GLU ASP VAL ALA PRO THR LEU PRO ASP GLY HIS PHE ASP SEQRES 11 C 236 GLY ILE LEU TYR ASP THR TYR PRO LEU SER GLU GLU THR SEQRES 12 C 236 TRP HIS THR HIS GLN PHE ASN PHE ILE LYS ASN HIS ALA SEQRES 13 C 236 PHE ARG LEU LEU LYS PRO GLY GLY VAL LEU THR TYR CYS SEQRES 14 C 236 ASN LEU THR SER TRP GLY GLU LEU MET LYS SER LYS TYR SEQRES 15 C 236 SER ASP ILE THR ILE MET PHE GLU GLU THR GLN VAL PRO SEQRES 16 C 236 ALA LEU LEU GLU ALA GLY PHE ARG ARG GLU ASN ILE ARG SEQRES 17 C 236 THR GLU VAL MET ALA LEU VAL PRO PRO ALA ASP CYS ARG SEQRES 18 C 236 TYR TYR ALA PHE PRO GLN MET ILE THR PRO LEU VAL THR SEQRES 19 C 236 LYS GLY SEQRES 1 D 236 MET SER ALA PRO SER ALA THR PRO ILE PHE ALA PRO GLY SEQRES 2 D 236 GLU ASN CYS SER PRO ALA TRP GLY ALA ALA PRO ALA ALA SEQRES 3 D 236 TYR ASP ALA ALA ASP THR HIS LEU ARG ILE LEU GLY LYS SEQRES 4 D 236 PRO VAL MET GLU ARG TRP GLU THR PRO TYR MET HIS ALA SEQRES 5 D 236 LEU ALA ALA ALA ALA SER SER LYS GLY GLY ARG VAL LEU SEQRES 6 D 236 GLU VAL GLY PHE GLY MET ALA ILE ALA ALA SER LYS VAL SEQRES 7 D 236 GLN GLU ALA PRO ILE ASP GLU HIS TRP ILE ILE GLU CYS SEQRES 8 D 236 ASN ASP GLY VAL PHE GLN ARG LEU ARG ASP TRP ALA PRO SEQRES 9 D 236 ARG GLN THR HIS LYS VAL ILE PRO LEU LYS GLY LEU TRP SEQRES 10 D 236 GLU ASP VAL ALA PRO THR LEU PRO ASP GLY HIS PHE ASP SEQRES 11 D 236 GLY ILE LEU TYR ASP THR TYR PRO LEU SER GLU GLU THR SEQRES 12 D 236 TRP HIS THR HIS GLN PHE ASN PHE ILE LYS ASN HIS ALA SEQRES 13 D 236 PHE ARG LEU LEU LYS PRO GLY GLY VAL LEU THR TYR CYS SEQRES 14 D 236 ASN LEU THR SER TRP GLY GLU LEU MET LYS SER LYS TYR SEQRES 15 D 236 SER ASP ILE THR ILE MET PHE GLU GLU THR GLN VAL PRO SEQRES 16 D 236 ALA LEU LEU GLU ALA GLY PHE ARG ARG GLU ASN ILE ARG SEQRES 17 D 236 THR GLU VAL MET ALA LEU VAL PRO PRO ALA ASP CYS ARG SEQRES 18 D 236 TYR TYR ALA PHE PRO GLN MET ILE THR PRO LEU VAL THR SEQRES 19 D 236 LYS GLY HET SAH A4000 26 HET SAH B4001 26 HET SAH C4002 26 HET SAH D4003 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 9 HOH *981(H2 O) HELIX 1 1 CYS A 16 GLY A 21 1 6 HELIX 2 2 GLU A 46 SER A 58 1 13 HELIX 3 3 ALA A 72 GLN A 79 1 8 HELIX 4 4 ASN A 92 ALA A 103 1 12 HELIX 5 5 PRO A 104 GLN A 106 5 3 HELIX 6 6 LEU A 116 ALA A 121 1 6 HELIX 7 7 PRO A 122 LEU A 124 5 3 HELIX 8 8 SER A 140 TRP A 144 5 5 HELIX 9 9 THR A 146 HIS A 155 1 10 HELIX 10 10 HIS A 155 LEU A 159 1 5 HELIX 11 11 ASN A 170 MET A 178 1 9 HELIX 12 12 ASP A 184 GLN A 193 1 10 HELIX 13 13 GLN A 193 GLY A 201 1 9 HELIX 14 14 ARG A 203 GLU A 205 5 3 HELIX 15 15 CYS B 16 TRP B 20 5 5 HELIX 16 16 GLU B 46 SER B 58 1 13 HELIX 17 17 ALA B 72 GLN B 79 1 8 HELIX 18 18 ASN B 92 ALA B 103 1 12 HELIX 19 19 PRO B 104 GLN B 106 5 3 HELIX 20 20 LEU B 116 ALA B 121 1 6 HELIX 21 21 PRO B 122 LEU B 124 5 3 HELIX 22 22 SER B 140 TRP B 144 5 5 HELIX 23 23 THR B 146 HIS B 155 1 10 HELIX 24 24 HIS B 155 LEU B 159 1 5 HELIX 25 25 ASN B 170 MET B 178 1 9 HELIX 26 26 ASP B 184 GLN B 193 1 10 HELIX 27 27 GLN B 193 ALA B 200 1 8 HELIX 28 28 ARG B 203 GLU B 205 5 3 HELIX 29 29 CYS C 16 GLY C 21 1 6 HELIX 30 30 GLU C 46 SER C 58 1 13 HELIX 31 31 ALA C 72 GLN C 79 1 8 HELIX 32 32 ASN C 92 ALA C 103 1 12 HELIX 33 33 PRO C 104 GLN C 106 5 3 HELIX 34 34 LEU C 116 ALA C 121 1 6 HELIX 35 35 PRO C 122 LEU C 124 5 3 HELIX 36 36 THR C 146 HIS C 155 1 10 HELIX 37 37 HIS C 155 LEU C 159 1 5 HELIX 38 38 ASN C 170 MET C 178 1 9 HELIX 39 39 ASP C 184 GLN C 193 1 10 HELIX 40 40 GLN C 193 ALA C 200 1 8 HELIX 41 41 ARG C 203 GLU C 205 5 3 HELIX 42 42 GLU D 46 SER D 58 1 13 HELIX 43 43 ALA D 72 GLN D 79 1 8 HELIX 44 44 ASN D 92 ALA D 103 1 12 HELIX 45 45 PRO D 104 GLN D 106 5 3 HELIX 46 46 LEU D 116 ALA D 121 1 6 HELIX 47 47 PRO D 122 LEU D 124 5 3 HELIX 48 48 THR D 146 HIS D 155 1 10 HELIX 49 49 HIS D 155 LEU D 159 1 5 HELIX 50 50 ASN D 170 MET D 178 1 9 HELIX 51 51 ASP D 184 GLN D 193 1 10 HELIX 52 52 GLN D 193 ALA D 200 1 8 HELIX 53 53 ARG D 203 GLU D 205 5 3 SHEET 1 A 3 ALA A 25 TYR A 27 0 SHEET 2 A 3 HIS A 33 ILE A 36 -1 O ARG A 35 N ALA A 26 SHEET 3 A 3 LYS A 39 GLU A 43 -1 O MET A 42 N LEU A 34 SHEET 1 B 7 LYS A 109 LYS A 114 0 SHEET 2 B 7 ILE A 83 GLU A 90 1 N HIS A 86 O ILE A 111 SHEET 3 B 7 GLY A 62 VAL A 67 1 N GLU A 66 O TRP A 87 SHEET 4 B 7 PHE A 129 TYR A 134 1 O LEU A 133 N VAL A 67 SHEET 5 B 7 LEU A 160 TYR A 168 1 O LYS A 161 N PHE A 129 SHEET 6 B 7 GLN A 227 THR A 234 -1 O VAL A 233 N LEU A 166 SHEET 7 B 7 ILE A 207 ALA A 213 -1 N GLU A 210 O THR A 230 SHEET 1 C 3 ALA B 25 TYR B 27 0 SHEET 2 C 3 HIS B 33 ILE B 36 -1 O ARG B 35 N ALA B 26 SHEET 3 C 3 LYS B 39 GLU B 43 -1 O MET B 42 N LEU B 34 SHEET 1 D 7 LYS B 109 LYS B 114 0 SHEET 2 D 7 ILE B 83 GLU B 90 1 N ILE B 88 O LEU B 113 SHEET 3 D 7 GLY B 62 VAL B 67 1 N GLU B 66 O TRP B 87 SHEET 4 D 7 PHE B 129 TYR B 134 1 O LEU B 133 N VAL B 67 SHEET 5 D 7 LEU B 160 TYR B 168 1 O LYS B 161 N PHE B 129 SHEET 6 D 7 GLN B 227 THR B 234 -1 O VAL B 233 N LEU B 166 SHEET 7 D 7 ILE B 207 ALA B 213 -1 N GLU B 210 O THR B 230 SHEET 1 E 3 ALA C 25 TYR C 27 0 SHEET 2 E 3 HIS C 33 ILE C 36 -1 O ARG C 35 N ALA C 26 SHEET 3 E 3 LYS C 39 GLU C 43 -1 O MET C 42 N LEU C 34 SHEET 1 F 7 LYS C 109 LYS C 114 0 SHEET 2 F 7 ILE C 83 GLU C 90 1 N HIS C 86 O ILE C 111 SHEET 3 F 7 GLY C 62 VAL C 67 1 N GLU C 66 O TRP C 87 SHEET 4 F 7 PHE C 129 TYR C 134 1 O LEU C 133 N VAL C 67 SHEET 5 F 7 LEU C 160 TYR C 168 1 O LYS C 161 N PHE C 129 SHEET 6 F 7 GLN C 227 THR C 234 -1 O VAL C 233 N LEU C 166 SHEET 7 F 7 ILE C 207 ALA C 213 -1 N GLU C 210 O THR C 230 SHEET 1 G 3 ALA D 25 TYR D 27 0 SHEET 2 G 3 HIS D 33 ILE D 36 -1 O ARG D 35 N ALA D 26 SHEET 3 G 3 LYS D 39 GLU D 43 -1 O MET D 42 N LEU D 34 SHEET 1 H 7 LYS D 109 LYS D 114 0 SHEET 2 H 7 ILE D 83 GLU D 90 1 N HIS D 86 O ILE D 111 SHEET 3 H 7 GLY D 62 VAL D 67 1 N GLU D 66 O TRP D 87 SHEET 4 H 7 PHE D 129 TYR D 134 1 O LEU D 133 N VAL D 67 SHEET 5 H 7 LEU D 160 TYR D 168 1 O LYS D 161 N PHE D 129 SHEET 6 H 7 GLN D 227 THR D 234 -1 O VAL D 233 N LEU D 166 SHEET 7 H 7 ILE D 207 ALA D 213 -1 N GLU D 210 O THR D 230 SITE 1 AC1 24 TRP A 20 ILE A 36 MET A 42 MET A 50 SITE 2 AC1 24 GLY A 68 PHE A 69 GLY A 70 MET A 71 SITE 3 AC1 24 ALA A 72 ILE A 73 ALA A 74 GLU A 90 SITE 4 AC1 24 CYS A 91 ASN A 92 VAL A 95 GLY A 115 SITE 5 AC1 24 LEU A 116 TRP A 117 GLU A 118 ASP A 135 SITE 6 AC1 24 THR A 136 TYR A 137 HOH A 246 HOH A 256 SITE 1 AC2 25 TRP B 20 ILE B 36 MET B 42 MET B 50 SITE 2 AC2 25 GLY B 68 PHE B 69 GLY B 70 MET B 71 SITE 3 AC2 25 ALA B 72 ILE B 73 ALA B 74 GLU B 90 SITE 4 AC2 25 CYS B 91 ASN B 92 VAL B 95 GLY B 115 SITE 5 AC2 25 LEU B 116 TRP B 117 GLU B 118 ASP B 135 SITE 6 AC2 25 THR B 136 TYR B 137 LEU B 139 HOH B 530 SITE 7 AC2 25 HOH B 750 SITE 1 AC3 24 TRP C 20 ILE C 36 MET C 42 MET C 50 SITE 2 AC3 24 GLY C 68 PHE C 69 GLY C 70 MET C 71 SITE 3 AC3 24 ALA C 72 ILE C 73 ALA C 74 GLU C 90 SITE 4 AC3 24 CYS C 91 ASN C 92 VAL C 95 GLY C 115 SITE 5 AC3 24 LEU C 116 TRP C 117 GLU C 118 ASP C 135 SITE 6 AC3 24 THR C 136 TYR C 137 LEU C 139 HOH C 298 SITE 1 AC4 26 TRP D 20 ILE D 36 VAL D 41 MET D 42 SITE 2 AC4 26 MET D 50 GLY D 68 PHE D 69 GLY D 70 SITE 3 AC4 26 MET D 71 ALA D 72 ILE D 73 ALA D 74 SITE 4 AC4 26 GLU D 90 CYS D 91 ASN D 92 VAL D 95 SITE 5 AC4 26 GLY D 115 LEU D 116 TRP D 117 GLU D 118 SITE 6 AC4 26 ASP D 135 THR D 136 TYR D 137 LEU D 139 SITE 7 AC4 26 HOH D 253 HOH D 400 CRYST1 200.327 200.327 52.060 90.00 90.00 120.00 P 64 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004992 0.002882 0.000000 0.00000 SCALE2 0.000000 0.005764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019209 0.00000