PDB Short entry for 3OVA HEADER TRANSFERASE/RNA 16-SEP-10 3OVA TITLE HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 TITLE 2 OF TRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCA-ADDING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CCA TRNA NUCLEOTIDYLTRANSFERASE,TRNA CCA-PYROPHOSPHORYLASE, COMPND 5 TRNA ADENYLYL-/CYTIDYLYL- TRANSFERASE,TRNA NUCLEOTIDYLTRANSFERASE, COMPND 6 TRNA-NT; COMPND 7 EC: 2.7.7.72; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (34-MER); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 7 ORGANISM_TAXID: 32630; SOURCE 8 OTHER_DETAILS: CHEMISTRY SYNTHESIS KEYWDS PROTEIN-RNA, ROSSMANN FOLD, CCA-ADDING, TRNA, NUCLEOTIDYLTRANSFER, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.C.PAN,Y.XIONG,T.A.STEITZ REVDAT 2 21-FEB-24 3OVA 1 COMPND SOURCE REMARK DBREF REVDAT 1 01-DEC-10 3OVA 0 JRNL AUTH B.PAN,Y.XIONG,T.A.STEITZ JRNL TITL HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE AT JRNL TITL 2 POSITION 76 OF TRNA. JRNL REF SCIENCE V. 330 937 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 21071662 JRNL DOI 10.1126/SCIENCE.1194985 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2326 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3570 REMARK 3 NUCLEIC ACID ATOMS : 720 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4499 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6217 ; 1.279 ; 2.184 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.458 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;33.627 ;22.760 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 679 ;17.506 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3150 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2030 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3031 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2211 ; 0.535 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3452 ; 0.896 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2797 ; 1.332 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2765 ; 2.188 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2899 -1.9639 -42.8428 REMARK 3 T TENSOR REMARK 3 T11: -0.0687 T22: -0.0217 REMARK 3 T33: -0.0411 T12: 0.0000 REMARK 3 T13: -0.0282 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9646 L22: 0.7825 REMARK 3 L33: 1.9761 L12: -0.0843 REMARK 3 L13: -0.3111 L23: -0.0749 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.1312 S13: 0.0172 REMARK 3 S21: 0.0017 S22: 0.1045 S23: 0.0581 REMARK 3 S31: -0.1217 S32: -0.0715 S33: -0.0758 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 15 REMARK 3 RESIDUE RANGE : A 144 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9486 -3.4559 -18.1892 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.0220 REMARK 3 T33: -0.0396 T12: 0.0037 REMARK 3 T13: 0.0138 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.2452 L22: 0.9097 REMARK 3 L33: 1.9768 L12: 0.1626 REMARK 3 L13: 0.0093 L23: -0.1164 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.1861 S13: 0.0289 REMARK 3 S21: 0.0267 S22: -0.0099 S23: 0.0505 REMARK 3 S31: -0.1529 S32: -0.0429 S33: -0.0481 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 339 REMARK 3 RESIDUE RANGE : A 384 A 437 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7583 -5.1404 -17.1304 REMARK 3 T TENSOR REMARK 3 T11: -0.0798 T22: -0.0394 REMARK 3 T33: -0.0245 T12: -0.0381 REMARK 3 T13: -0.0143 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.2322 L22: 0.8886 REMARK 3 L33: 2.4173 L12: -0.3934 REMARK 3 L13: 0.2274 L23: -0.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0747 S13: 0.0934 REMARK 3 S21: 0.0471 S22: -0.0456 S23: -0.0104 REMARK 3 S31: -0.1540 S32: 0.0743 S33: 0.0848 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7514 -32.0677 -0.4975 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: -0.0086 REMARK 3 T33: -0.0852 T12: 0.0169 REMARK 3 T13: -0.0204 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.7032 L22: 7.6480 REMARK 3 L33: 0.6108 L12: 0.7935 REMARK 3 L13: 0.0524 L23: -1.9653 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: 0.2048 S13: 0.0040 REMARK 3 S21: -0.4416 S22: -0.0083 S23: -0.0236 REMARK 3 S31: 0.1830 S32: 0.0606 S33: -0.0722 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 34 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5982 -28.0669 -24.8047 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: -0.0172 REMARK 3 T33: 0.0855 T12: 0.0304 REMARK 3 T13: -0.1548 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 5.5788 L22: 2.8119 REMARK 3 L33: 2.7108 L12: -3.8569 REMARK 3 L13: 3.3324 L23: -1.9803 REMARK 3 S TENSOR REMARK 3 S11: 0.7344 S12: 0.2108 S13: -0.9125 REMARK 3 S21: -0.1814 S22: -0.1952 S23: 0.7550 REMARK 3 S31: 0.5386 S32: 0.2566 S33: -0.5392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46253 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2 M TRI-LITHIUM REMARK 280 CITRATE, 80 MM AMMONIUM SULFATE, 50 MM HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 213.97250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.97100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.97100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 320.95875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.97100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.97100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.98625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.97100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.97100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 320.95875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.97100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.97100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.98625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 213.97250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 57.94200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -57.94200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 628 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 257 REMARK 465 HIS A 258 REMARK 465 PRO A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 50 O HOH A 1 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G C 1 P G C 1 OP3 -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 A C 17 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 U C 19 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 U C 24 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 96 -60.43 -143.26 REMARK 500 GLU A 119 123.19 68.96 REMARK 500 PRO A 120 44.73 -82.64 REMARK 500 LEU A 316 -63.88 -93.45 REMARK 500 ARG A 366 107.07 56.51 REMARK 500 TYR A 411 133.02 -171.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 O REMARK 620 2 APC A 501 O3G 122.0 REMARK 620 3 APC A 501 O1A 139.7 97.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OUY RELATED DB: PDB REMARK 900 RELATED ID: 3OV7 RELATED DB: PDB REMARK 900 RELATED ID: 3OVB RELATED DB: PDB REMARK 900 RELATED ID: 3OVS RELATED DB: PDB DBREF1 3OVA A 3 437 UNP A0A101DCH0_ARCFL DBREF2 3OVA A A0A101DCH0 3 437 DBREF 3OVA C 1 34 PDB 3OVA 3OVA 1 34 SEQRES 1 A 435 VAL GLU GLU ILE LEU GLU LYS ALA LEU GLU LEU VAL ILE SEQRES 2 A 435 PRO ASP GLU GLU GLU VAL ARG LYS GLY ARG GLU ALA GLU SEQRES 3 A 435 GLU GLU LEU ARG ARG ARG LEU ASP GLU LEU GLY VAL GLU SEQRES 4 A 435 TYR VAL PHE VAL GLY SER TYR ALA ARG ASN THR TRP LEU SEQRES 5 A 435 LYS GLY SER LEU GLU ILE ASP VAL PHE LEU LEU PHE PRO SEQRES 6 A 435 GLU GLU PHE SER LYS GLU GLU LEU ARG GLU ARG GLY LEU SEQRES 7 A 435 GLU ILE GLY LYS ALA VAL LEU ASP SER TYR GLU ILE ARG SEQRES 8 A 435 TYR ALA GLU HIS PRO TYR VAL HIS GLY VAL VAL LYS GLY SEQRES 9 A 435 VAL GLU VAL ASP VAL VAL PRO CYS TYR LYS LEU LYS GLU SEQRES 10 A 435 PRO LYS ASN ILE LYS SER ALA VAL ASP ARG THR PRO PHE SEQRES 11 A 435 HIS HIS LYS TRP LEU GLU GLY ARG ILE LYS GLY LYS GLU SEQRES 12 A 435 ASN GLU VAL ARG LEU LEU LYS GLY PHE LEU LYS ALA ASN SEQRES 13 A 435 GLY ILE TYR GLY ALA GLU TYR LYS VAL ARG GLY PHE SER SEQRES 14 A 435 GLY TYR LEU CYS GLU LEU LEU ILE VAL PHE TYR GLY SER SEQRES 15 A 435 PHE LEU GLU THR VAL LYS ASN ALA ARG ARG TRP THR ARG SEQRES 16 A 435 ARG THR VAL ILE ASP VAL ALA LYS GLY GLU VAL ARG LYS SEQRES 17 A 435 GLY GLU GLU PHE PHE VAL VAL ASP PRO VAL ASP GLU LYS SEQRES 18 A 435 ARG ASN VAL ALA ALA ASN LEU SER LEU ASP ASN LEU ALA SEQRES 19 A 435 ARG PHE VAL HIS LEU CYS ARG GLU PHE MET GLU ALA PRO SEQRES 20 A 435 SER LEU GLY PHE PHE LYS PRO LYS HIS PRO LEU GLU ILE SEQRES 21 A 435 GLU PRO GLU ARG LEU ARG LYS ILE VAL GLU GLU ARG GLY SEQRES 22 A 435 THR ALA VAL PHE ALA VAL LYS PHE ARG LYS PRO ASP ILE SEQRES 23 A 435 VAL ASP ASP ASN LEU TYR PRO GLN LEU GLU ARG ALA SER SEQRES 24 A 435 ARG LYS ILE PHE GLU PHE LEU GLU ARG GLU ASN PHE MET SEQRES 25 A 435 PRO LEU ARG SER ALA PHE LYS ALA SER GLU GLU PHE CYS SEQRES 26 A 435 TYR LEU LEU PHE GLU CYS GLN ILE LYS GLU ILE SER ARG SEQRES 27 A 435 VAL PHE ARG ARG MET GLY PRO GLN PHE GLU ASP GLU ARG SEQRES 28 A 435 ASN VAL LYS LYS PHE LEU SER ARG ASN ARG ALA PHE ARG SEQRES 29 A 435 PRO PHE ILE GLU ASN GLY ARG TRP TRP ALA PHE GLU MET SEQRES 30 A 435 ARG LYS PHE THR THR PRO GLU GLU GLY VAL ARG SER TYR SEQRES 31 A 435 ALA SER THR HIS TRP HIS THR LEU GLY LYS ASN VAL GLY SEQRES 32 A 435 GLU SER ILE ARG GLU TYR PHE GLU ILE ILE SER GLY GLU SEQRES 33 A 435 LYS LEU PHE LYS GLU PRO VAL THR ALA GLU LEU CYS GLU SEQRES 34 A 435 MET MET GLY VAL LYS ASP SEQRES 1 C 34 G G A A G U A G A U G G U SEQRES 2 C 34 U C A A G U C C A U U U A SEQRES 3 C 34 C U U C C A C C HET APC A 501 31 HET SO4 A 503 5 HET MG A 601 1 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 APC C11 H18 N5 O12 P3 FORMUL 4 SO4 O4 S 2- FORMUL 5 MG MG 2+ FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 HOH *219(H2 O) HELIX 1 1 VAL A 3 ILE A 15 1 13 HELIX 2 2 ASP A 17 GLY A 39 1 23 HELIX 3 3 GLY A 46 ASN A 51 1 6 HELIX 4 4 SER A 71 LEU A 87 1 17 HELIX 5 5 ARG A 129 GLY A 139 1 11 HELIX 6 6 LYS A 144 ASN A 158 1 15 HELIX 7 7 SER A 171 GLY A 183 1 13 HELIX 8 8 SER A 184 ARG A 193 1 10 HELIX 9 9 SER A 231 ALA A 248 1 18 HELIX 10 10 SER A 250 LYS A 255 5 6 HELIX 11 11 GLU A 263 GLY A 275 1 13 HELIX 12 12 VAL A 289 GLU A 311 1 23 HELIX 13 13 ASP A 351 ARG A 361 1 11 HELIX 14 14 THR A 384 HIS A 396 1 13 HELIX 15 15 TRP A 397 LEU A 400 5 4 HELIX 16 16 GLY A 401 TYR A 411 1 11 HELIX 17 17 GLY A 417 LYS A 422 1 6 HELIX 18 18 VAL A 425 GLY A 434 1 10 SHEET 1 A 5 TYR A 42 VAL A 45 0 SHEET 2 A 5 GLU A 59 PHE A 66 -1 O PHE A 63 N VAL A 43 SHEET 3 A 5 VAL A 107 TYR A 115 1 O CYS A 114 N PHE A 66 SHEET 4 A 5 VAL A 100 VAL A 104 -1 N VAL A 100 O VAL A 111 SHEET 5 A 5 SER A 89 GLU A 91 -1 N GLU A 91 O HIS A 101 SHEET 1 B 4 GLU A 207 LYS A 210 0 SHEET 2 B 4 THR A 199 ASP A 202 -1 N ASP A 202 O GLU A 207 SHEET 3 B 4 PHE A 215 ASP A 218 1 O PHE A 215 N ILE A 201 SHEET 4 B 4 ASP A 221 ASN A 225 -1 O ARG A 224 N ASP A 218 SHEET 1 C 4 PRO A 315 ALA A 322 0 SHEET 2 C 4 PHE A 326 CYS A 333 -1 O LEU A 330 N ALA A 319 SHEET 3 C 4 ALA A 277 ARG A 284 -1 N PHE A 283 O CYS A 327 SHEET 4 C 4 GLU A 413 SER A 416 -1 O GLU A 413 N LYS A 282 SHEET 1 D 3 VAL A 341 GLN A 348 0 SHEET 2 D 3 ARG A 373 MET A 379 -1 O ALA A 376 N ARG A 344 SHEET 3 D 3 PHE A 368 GLU A 370 -1 N GLU A 370 O ARG A 373 LINK O GLU A 59 MG MG A 601 1555 1555 2.72 LINK O3G APC A 501 MG MG A 601 1555 1555 2.87 LINK O1A APC A 501 MG MG A 601 1555 1555 2.98 SITE 1 AC1 22 HOH A 1 HOH A 2 GLY A 46 SER A 47 SITE 2 AC1 22 ARG A 50 GLU A 59 ASP A 61 THR A 130 SITE 3 AC1 22 HIS A 133 LYS A 152 TYR A 161 ARG A 224 SITE 4 AC1 22 HOH A 448 HOH A 519 HOH A 543 HOH A 561 SITE 5 AC1 22 HOH A 567 HOH A 572 MG A 601 A C 32 SITE 6 AC1 22 C C 33 C C 34 SITE 1 AC2 3 ARG A 299 ARG A 302 LYS A 303 SITE 1 AC3 4 SER A 47 GLU A 59 ASP A 61 APC A 501 SITE 1 AC4 5 VAL A 40 GLU A 41 LEU A 64 LEU A 65 SITE 2 AC4 5 PHE A 66 SITE 1 AC5 5 ARG A 140 ILE A 408 ARG A 409 TYR A 411 SITE 2 AC5 5 PHE A 412 SITE 1 AC6 5 ILE A 123 LYS A 124 SER A 125 ALA A 126 SITE 2 AC6 5 HOH A 545 CRYST1 57.942 57.942 427.945 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002337 0.00000