PDB Short entry for 3P1N HEADER PEPTIDE BINDING PROTEIN 30-SEP-10 3P1N TITLE CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA IN COMPLEX WITH TASK-3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STRATIFIN, EPITHELIAL CELL MARKER PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 6-MER PEPTIDE FROM POTASSIUM CHANNEL SUBFAMILY K MEMBER 9; COMPND 8 CHAIN: P; COMPND 9 SYNONYM: TASK-3 PEPTIDE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS HELICAL PROTEIN, PHOSPHOPROTEIN, ADAPTER PROTEIN, PEPTIDE BINDING KEYWDS 2 PROTEIN, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR C.ANDERS,Y.HIGUCHI,B.SCHUMACHER,P.THIEL,N.KATO,C.OTTMANN REVDAT 4 06-DEC-23 3P1N 1 REMARK REVDAT 3 01-NOV-23 3P1N 1 REMARK SEQADV LINK REVDAT 2 07-JUN-17 3P1N 1 JRNL REVDAT 1 12-OCT-11 3P1N 0 JRNL AUTH C.ANDERS,Y.HIGUCHI,K.KOSCHINSKY,M.BARTEL,B.SCHUMACHER, JRNL AUTH 2 P.THIEL,H.NITTA,R.PREISIG-MULLER,G.SCHLICHTHORL,V.RENIGUNTA, JRNL AUTH 3 J.OHKANDA,J.DAUT,N.KATO,C.OTTMANN JRNL TITL A SEMISYNTHETIC FUSICOCCANE STABILIZES A PROTEIN-PROTEIN JRNL TITL 2 INTERACTION AND ENHANCES THE EXPRESSION OF K+ CHANNELS AT JRNL TITL 3 THE CELL SURFACE JRNL REF CHEM. BIOL. V. 20 583 2013 JRNL REFN ISSN 1879-1301 JRNL PMID 23601647 JRNL DOI 10.1016/J.CHEMBIOL.2013.03.015 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2254 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3115 ; 2.553 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ;11.720 ; 5.060 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;36.414 ;24.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;13.626 ;15.033 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1750 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 1.357 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 2.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 3.584 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 809 ; 5.682 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.590 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.59 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095M HEPES NA-SALT, 25.6% PEG 400, REMARK 280 0.19M CACL2, 5% GLYCEROL, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.02500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.02500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.02500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.11000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.02500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 470 LYS P 369 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 85 OE2 GLU A 86 1.14 REMARK 500 O HOH A 291 O HOH A 424 1.20 REMARK 500 OE1 GLU A 110 O HOH A 393 1.46 REMARK 500 NE2 GLN A 8 O HOH A 517 1.69 REMARK 500 OD1 ASP A 139 O HOH A 397 1.78 REMARK 500 O HOH A 329 O HOH A 368 1.99 REMARK 500 OG SER A 177 O HOH A 441 1.99 REMARK 500 OH TYR A 19 O HOH A 265 2.02 REMARK 500 O HOH A 401 O HOH A 402 2.10 REMARK 500 O HOH A 406 O HOH A 407 2.15 REMARK 500 ND2 ASN A 50 O HOH A 600 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 75 O HOH A 413 7455 2.06 REMARK 500 NZ LYS A 195 O HOH A 534 6445 2.14 REMARK 500 O HOH A 538 O HOH A 538 3454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 119 CD1 PHE A 119 CE1 0.149 REMARK 500 ARG A 148 CZ ARG A 148 NH1 0.079 REMARK 500 ARG A 148 CZ ARG A 148 NH2 0.079 REMARK 500 TYR A 181 CZ TYR A 181 CE2 -0.096 REMARK 500 GLU A 182 CB GLU A 182 CG -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 GLU A 31 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 PHE A 119 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 GLU A 133 OE1 - CD - OE2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 148 NH1 - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 176 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 215 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 VAL P 374 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 78.40 -108.00 REMARK 500 HIS A 106 37.11 -145.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE2 REMARK 620 2 HOH A 425 O 80.5 REMARK 620 3 HOH A 578 O 90.6 66.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 252 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE2 REMARK 620 2 GLU A 35 OE1 50.3 REMARK 620 3 GLU A 110 O 88.1 84.6 REMARK 620 4 HOH A 528 O 80.0 129.5 86.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 249 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 161 O REMARK 620 2 HOH A 369 O 153.3 REMARK 620 3 HOH A 399 O 81.7 72.9 REMARK 620 4 HOH A 413 O 81.5 99.7 75.9 REMARK 620 5 HOH A 492 O 78.6 91.0 85.2 154.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O98 RELATED DB: PDB REMARK 900 STRUCTURE OF THE 14-3-3 / H+-ATPASE PLANT COMPLEX REMARK 900 RELATED ID: 3LW1 RELATED DB: PDB REMARK 900 BINARY COMPLEX OF 14-3-3 SIGMA AND P53 PT387-PEPTIDE REMARK 900 RELATED ID: 3IQU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA IN COMPLEX WITH RAF1 REMARK 900 PEPTIDE (6MER) REMARK 900 RELATED ID: 3P1O RELATED DB: PDB REMARK 900 RELATED ID: 3P1P RELATED DB: PDB REMARK 900 RELATED ID: 3P1Q RELATED DB: PDB REMARK 900 RELATED ID: 3P1R RELATED DB: PDB REMARK 900 RELATED ID: 3P1S RELATED DB: PDB DBREF 3P1N A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 3P1N P 369 374 UNP Q9NPC2 KCNK9_HUMAN 369 374 SEQADV 3P1N ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 3P1N MET A -2 UNP P31947 EXPRESSION TAG SEQADV 3P1N GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 3P1N SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 235 ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN LYS SEQRES 2 A 235 ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP MET SEQRES 3 A 235 ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU GLU SEQRES 4 A 235 LEU SER CSO GLU GLU ARG ASN LEU LEU SER VAL ALA TYR SEQRES 5 A 235 LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG VAL SEQRES 6 A 235 LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SER SEQRES 7 A 235 GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU LYS SEQRES 8 A 235 VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL LEU SEQRES 9 A 235 GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY ASP SEQRES 10 A 235 ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY ASP SEQRES 11 A 235 TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP ASP SEQRES 12 A 235 LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR GLN SEQRES 13 A 235 GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO THR SEQRES 14 A 235 ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER VAL SEQRES 15 A 235 PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA ILE SEQRES 16 A 235 SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA ASP SEQRES 17 A 235 LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER THR SEQRES 18 A 235 LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP SEQRES 19 A 235 THR SEQRES 1 P 6 LYS ARG ARG LYS SEP VAL MODRES 3P1N CSO A 38 CYS S-HYDROXYCYSTEINE MODRES 3P1N SEP P 373 SER PHOSPHOSERINE HET CSO A 38 7 HET SEP P 373 10 HET MG A 249 1 HET CL A 250 1 HET MG A 251 1 HET MG A 252 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 MG 3(MG 2+) FORMUL 4 CL CL 1- FORMUL 7 HOH *408(H2 O) HELIX 1 1 GLU A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 LYS A 32 1 15 HELIX 3 3 SER A 37 ASN A 70 1 34 HELIX 4 4 PRO A 79 SER A 105 1 27 HELIX 5 5 HIS A 106 ALA A 111 1 6 HELIX 6 6 ASP A 113 ALA A 135 1 23 HELIX 7 7 ASP A 139 MET A 162 1 24 HELIX 8 8 ASN A 166 ILE A 183 1 18 HELIX 9 9 SER A 186 ALA A 203 1 18 HELIX 10 10 ASP A 204 LEU A 208 5 5 HELIX 11 11 SER A 209 THR A 231 1 23 LINK C SER A 37 N CSO A 38 1555 1555 1.34 LINK C CSO A 38 N GLU A 39 1555 1555 1.30 LINK C LYS P 372 N SEP P 373 1555 1555 1.34 LINK C SEP P 373 N VAL P 374 1555 1555 1.32 LINK OE2 GLU A 2 MG MG A 251 1555 1555 2.18 LINK OE2 GLU A 35 MG MG A 252 1555 1555 2.45 LINK OE1 GLU A 35 MG MG A 252 1555 1555 2.58 LINK O GLU A 110 MG MG A 252 1555 1555 2.25 LINK O GLU A 161 MG MG A 249 1555 1555 2.26 LINK MG MG A 249 O HOH A 369 1555 1555 2.26 LINK MG MG A 249 O HOH A 399 1555 1555 2.49 LINK MG MG A 249 O HOH A 413 1555 1555 2.23 LINK MG MG A 249 O HOH A 492 1555 1555 2.54 LINK MG MG A 251 O HOH A 425 1555 1555 2.74 LINK MG MG A 251 O HOH A 578 1555 1555 2.13 LINK MG MG A 252 O HOH A 528 1555 1555 2.37 CISPEP 1 SER A 105 HIS A 106 0 7.76 SITE 1 AC1 6 GLU A 75 GLU A 161 HOH A 369 HOH A 399 SITE 2 AC1 6 HOH A 413 HOH A 492 SITE 1 AC2 2 LYS A 9 HOH A 514 SITE 1 AC3 3 GLU A 2 HOH A 425 HOH A 578 SITE 1 AC4 6 GLU A 35 GLU A 110 GLU A 188 HOH A 332 SITE 2 AC4 6 HOH A 528 HOH A 593 CRYST1 82.220 112.050 62.510 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015997 0.00000