PDB Short entry for 3P5D HEADER SUGAR BINDING PROTEIN 08-OCT-10 3P5D TITLE STRUCTURE OF THE CARBOHYDRATE-RECOGNITION DOMAIN OF HUMAN LANGERIN TITLE 2 WITH MAN5 (MAN ALPHA1-3(MAN ALPHA1-6)MAN ALPHA1-6)(MAN- ALPHA1-3)MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER K; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LANGERIN CRD (UNP RESIDUES 193-328); COMPND 5 SYNONYM: LANGERIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD207, CLEC4K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JA221; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PINIIIOMPA2 KEYWDS C-TYPE LECTIN, CARBOHYDRATE-BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,M.E.TAYLOR,N.RAZI,R.MCBRIDE,Y.A.KNIREL,S.A.GRAHAM, AUTHOR 2 K.DRICKAMER,W.I.WEIS REVDAT 4 29-JUL-20 3P5D 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 26-JAN-11 3P5D 1 JRNL REVDAT 2 15-DEC-10 3P5D 1 JRNL REVDAT 1 08-DEC-10 3P5D 0 JRNL AUTH H.FEINBERG,M.E.TAYLOR,N.RAZI,R.MCBRIDE,Y.A.KNIREL, JRNL AUTH 2 S.A.GRAHAM,K.DRICKAMER,W.I.WEIS JRNL TITL STRUCTURAL BASIS FOR LANGERIN RECOGNITION OF DIVERSE JRNL TITL 2 PATHOGEN AND MAMMALIAN GLYCANS THROUGH A SINGLE BINDING JRNL TITL 3 SITE. JRNL REF J.MOL.BIOL. V. 405 1027 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21112338 JRNL DOI 10.1016/J.JMB.2010.11.039 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0428 - 4.8037 1.00 2626 143 0.1658 0.1954 REMARK 3 2 4.8037 - 3.8138 1.00 2582 145 0.1315 0.1667 REMARK 3 3 3.8138 - 3.3320 1.00 2592 112 0.1500 0.1930 REMARK 3 4 3.3320 - 3.0275 1.00 2577 141 0.1703 0.1759 REMARK 3 5 3.0275 - 2.8106 1.00 2579 118 0.1826 0.2532 REMARK 3 6 2.8106 - 2.6449 1.00 2563 128 0.1835 0.2499 REMARK 3 7 2.6449 - 2.5125 1.00 2578 136 0.1728 0.2265 REMARK 3 8 2.5125 - 2.4031 1.00 2550 122 0.1744 0.2171 REMARK 3 9 2.4031 - 2.3106 1.00 2578 149 0.1821 0.2314 REMARK 3 10 2.3106 - 2.2309 1.00 2567 146 0.1861 0.2399 REMARK 3 11 2.2309 - 2.1612 1.00 2545 128 0.1851 0.2405 REMARK 3 12 2.1612 - 2.0994 1.00 2565 132 0.1842 0.2399 REMARK 3 13 2.0994 - 2.0441 1.00 2533 148 0.1900 0.2624 REMARK 3 14 2.0441 - 1.9943 1.00 2542 152 0.1874 0.2379 REMARK 3 15 1.9943 - 1.9489 1.00 2553 141 0.1948 0.2652 REMARK 3 16 1.9489 - 1.9074 1.00 2531 145 0.2059 0.2725 REMARK 3 17 1.9074 - 1.8693 1.00 2539 135 0.2077 0.2731 REMARK 3 18 1.8693 - 1.8340 1.00 2565 152 0.2064 0.2627 REMARK 3 19 1.8340 - 1.8013 0.97 2469 145 0.1981 0.2734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 39.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52440 REMARK 3 B22 (A**2) : 0.52440 REMARK 3 B33 (A**2) : -1.04870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4500 REMARK 3 ANGLE : 1.076 6080 REMARK 3 CHIRALITY : 0.083 606 REMARK 3 PLANARITY : 0.004 769 REMARK 3 DIHEDRAL : 13.554 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 5 MG/ML LANGERIN REMARK 280 CRD, 2.5 MM CACL2, 10 MM TRIS PH 8.0, 25 MM NACL AND 10 MM MAN5. REMARK 280 RESERVOIR SOLUTION: 0.1 M HEPES PH 7.0, 0.25 M MGCL2 AND 25% REMARK 280 POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.83500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 446 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 193 REMARK 465 VAL A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 GLN A 197 REMARK 465 SER A 326 REMARK 465 GLU A 327 REMARK 465 PRO A 328 REMARK 465 GLN B 193 REMARK 465 VAL B 194 REMARK 465 VAL B 195 REMARK 465 SER B 196 REMARK 465 GLN B 197 REMARK 465 SER B 326 REMARK 465 GLU B 327 REMARK 465 PRO B 328 REMARK 465 GLN C 193 REMARK 465 VAL C 194 REMARK 465 VAL C 195 REMARK 465 SER C 326 REMARK 465 GLU C 327 REMARK 465 PRO C 328 REMARK 465 GLN D 193 REMARK 465 VAL D 194 REMARK 465 VAL D 195 REMARK 465 SER D 196 REMARK 465 PRO D 325 REMARK 465 SER D 326 REMARK 465 GLU D 327 REMARK 465 PRO D 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 292 31.25 -151.72 REMARK 500 GLU D 261 63.32 25.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 285 OE1 REMARK 620 2 ASN A 287 OD1 74.2 REMARK 620 3 GLU A 293 OE1 146.3 74.9 REMARK 620 4 ASN A 307 OD1 72.0 145.4 139.7 REMARK 620 5 ASP A 308 OD1 72.8 83.6 90.8 93.6 REMARK 620 6 ASP A 308 O 133.2 136.6 67.1 75.0 77.1 REMARK 620 7 MAN E 2 O4 76.3 77.0 109.1 87.7 147.0 134.4 REMARK 620 8 MAN E 2 O3 134.2 118.8 73.8 81.0 146.7 69.7 66.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 285 OE1 REMARK 620 2 ASN B 287 OD1 75.4 REMARK 620 3 GLU B 293 OE1 140.9 70.0 REMARK 620 4 ASN B 307 OD1 69.0 142.8 147.2 REMARK 620 5 ASP B 308 OD1 73.8 87.5 86.9 92.4 REMARK 620 6 ASP B 308 O 131.1 137.2 71.1 77.2 73.3 REMARK 620 7 MAN B 402 O4 76.8 78.6 112.5 83.2 149.8 133.6 REMARK 620 8 MAN B 402 O3 136.8 117.8 77.3 83.5 142.2 69.1 67.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 285 OE1 REMARK 620 2 ASN C 287 OD1 71.9 REMARK 620 3 GLU C 293 OE1 143.4 74.5 REMARK 620 4 ASN C 307 OD1 70.3 142.0 143.0 REMARK 620 5 ASP C 308 OD1 74.8 82.0 86.6 92.2 REMARK 620 6 ASP C 308 O 132.4 136.5 68.3 75.8 74.1 REMARK 620 7 MAN C 402 O4 73.6 77.5 112.8 87.9 146.3 137.8 REMARK 620 8 MAN C 402 O3 134.7 119.6 75.6 85.3 145.8 72.2 67.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 285 OE1 REMARK 620 2 ASN D 287 OD1 74.3 REMARK 620 3 GLU D 293 OE1 147.0 76.6 REMARK 620 4 ASN D 307 OD1 74.7 147.5 135.9 REMARK 620 5 ASP D 308 OD1 75.8 89.0 88.6 92.5 REMARK 620 6 ASP D 308 O 132.8 135.2 64.0 74.9 70.4 REMARK 620 7 MAN D 402 O3 136.3 115.6 71.4 81.5 142.2 71.9 REMARK 620 8 MAN D 402 O4 74.1 75.2 112.8 87.4 148.8 138.7 68.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: ALPHA-D-MANNOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 MAN B 402 REMARK 630 MAN C 402 REMARK 630 MAN D 402 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P5E RELATED DB: PDB REMARK 900 RELATED ID: 3P5F RELATED DB: PDB REMARK 900 RELATED ID: 3P5G RELATED DB: PDB REMARK 900 RELATED ID: 3P5H RELATED DB: PDB REMARK 900 RELATED ID: 3P5I RELATED DB: PDB DBREF 3P5D A 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 3P5D B 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 3P5D C 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 3P5D D 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 SEQADV 3P5D ALA A 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 3P5D ALA B 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 3P5D ALA C 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 3P5D ALA D 278 UNP Q9UJ71 VAL 278 VARIANT SEQRES 1 A 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 A 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 A 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 A 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 A 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 A 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 A 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 A 136 GLY GLU PRO ASN ASN ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 A 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 A 136 PRO CYS ASP LYS THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 A 136 TYR VAL PRO SER GLU PRO SEQRES 1 B 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 B 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 B 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 B 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 B 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 B 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 B 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 B 136 GLY GLU PRO ASN ASN ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 B 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 B 136 PRO CYS ASP LYS THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 B 136 TYR VAL PRO SER GLU PRO SEQRES 1 C 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 C 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 C 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 C 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 C 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 C 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 C 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 C 136 GLY GLU PRO ASN ASN ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 C 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 C 136 PRO CYS ASP LYS THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 C 136 TYR VAL PRO SER GLU PRO SEQRES 1 D 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 D 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 D 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 D 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 D 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 D 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 D 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 D 136 GLY GLU PRO ASN ASN ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 D 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 D 136 PRO CYS ASP LYS THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 D 136 TYR VAL PRO SER GLU PRO HET MAN E 1 12 HET MAN E 2 11 HET CA A 500 1 HET MAN B 402 12 HET CA B 500 1 HET MAN C 402 12 HET CA C 500 1 HET MAN D 402 12 HET CA D 500 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION FORMUL 5 MAN 5(C6 H12 O6) FORMUL 6 CA 4(CA 2+) FORMUL 13 HOH *526(H2 O) HELIX 1 1 THR A 215 ARG A 226 1 12 HELIX 2 2 SER A 235 GLY A 247 1 13 HELIX 3 3 ASN A 273 ALA A 278 1 6 HELIX 4 4 ARG A 279 TRP A 281 5 3 HELIX 5 5 ASN A 288 ASN A 292 5 5 HELIX 6 6 THR B 215 ARG B 226 1 12 HELIX 7 7 SER B 235 GLY B 247 1 13 HELIX 8 8 ASN B 273 ALA B 278 1 6 HELIX 9 9 ARG B 279 TRP B 281 5 3 HELIX 10 10 ASN B 288 ASN B 292 5 5 HELIX 11 11 THR C 215 ARG C 226 1 12 HELIX 12 12 SER C 235 GLY C 247 1 13 HELIX 13 13 ASN C 273 ALA C 278 1 6 HELIX 14 14 ARG C 279 TRP C 281 5 3 HELIX 15 15 ASN C 288 ASN C 292 5 5 HELIX 16 16 THR D 215 ARG D 226 1 12 HELIX 17 17 SER D 235 GLY D 247 1 13 HELIX 18 18 ASN D 273 ALA D 278 1 6 HELIX 19 19 ARG D 279 TRP D 281 5 3 HELIX 20 20 ASN D 288 ASN D 292 5 5 SHEET 1 A 5 LYS A 200 PHE A 202 0 SHEET 2 A 5 ASN A 205 PHE A 209 -1 O TYR A 207 N LYS A 200 SHEET 3 A 5 LEU A 316 PRO A 322 -1 O ARG A 321 N PHE A 206 SHEET 4 A 5 TYR A 251 ALA A 258 1 N TRP A 252 O LEU A 316 SHEET 5 A 5 ASP A 263 TRP A 266 -1 O ASP A 263 N ALA A 258 SHEET 1 B 5 HIS A 229 LEU A 230 0 SHEET 2 B 5 LEU A 316 PRO A 322 -1 O LYS A 320 N HIS A 229 SHEET 3 B 5 TYR A 251 ALA A 258 1 N TRP A 252 O LEU A 316 SHEET 4 B 5 CYS A 295 ILE A 298 -1 O ILE A 298 N TYR A 251 SHEET 5 B 5 TRP A 306 ALA A 309 -1 O ASN A 307 N ASN A 297 SHEET 1 C 5 LYS B 200 PHE B 202 0 SHEET 2 C 5 ASN B 205 PHE B 209 -1 O TYR B 207 N LYS B 200 SHEET 3 C 5 LEU B 316 PRO B 322 -1 O ARG B 321 N PHE B 206 SHEET 4 C 5 TYR B 251 ALA B 258 1 N TRP B 252 O LEU B 316 SHEET 5 C 5 ASP B 263 TRP B 266 -1 O SER B 265 N THR B 256 SHEET 1 D 5 HIS B 229 LEU B 230 0 SHEET 2 D 5 LEU B 316 PRO B 322 -1 O LYS B 320 N HIS B 229 SHEET 3 D 5 TYR B 251 ALA B 258 1 N TRP B 252 O LEU B 316 SHEET 4 D 5 CYS B 295 ILE B 298 -1 O ILE B 298 N TYR B 251 SHEET 5 D 5 TRP B 306 ALA B 309 -1 O ASN B 307 N ASN B 297 SHEET 1 E 5 TRP C 199 PHE C 202 0 SHEET 2 E 5 ASN C 205 PHE C 209 -1 O TYR C 207 N LYS C 200 SHEET 3 E 5 LEU C 316 PRO C 322 -1 O ARG C 321 N PHE C 206 SHEET 4 E 5 TYR C 251 ALA C 258 1 N TRP C 252 O LEU C 316 SHEET 5 E 5 ASP C 263 TRP C 266 -1 O ASP C 263 N ALA C 258 SHEET 1 F 5 HIS C 229 LEU C 230 0 SHEET 2 F 5 LEU C 316 PRO C 322 -1 O LYS C 320 N HIS C 229 SHEET 3 F 5 TYR C 251 ALA C 258 1 N TRP C 252 O LEU C 316 SHEET 4 F 5 CYS C 295 ILE C 298 -1 O ILE C 298 N TYR C 251 SHEET 5 F 5 TRP C 306 ALA C 309 -1 O ASN C 307 N ASN C 297 SHEET 1 G 5 TRP D 199 PHE D 202 0 SHEET 2 G 5 ASN D 205 PHE D 209 -1 O TYR D 207 N LYS D 200 SHEET 3 G 5 LEU D 316 PRO D 322 -1 O ARG D 321 N PHE D 206 SHEET 4 G 5 TYR D 251 ALA D 258 1 N TRP D 252 O LEU D 316 SHEET 5 G 5 ASP D 263 TRP D 266 -1 O SER D 265 N THR D 256 SHEET 1 H 5 HIS D 229 LEU D 230 0 SHEET 2 H 5 LEU D 316 PRO D 322 -1 O LYS D 320 N HIS D 229 SHEET 3 H 5 TYR D 251 ALA D 258 1 N TRP D 252 O LEU D 316 SHEET 4 H 5 CYS D 295 ILE D 298 -1 O ILE D 298 N TYR D 251 SHEET 5 H 5 TRP D 306 ALA D 309 -1 O ASN D 307 N ASN D 297 SSBOND 1 CYS A 223 CYS A 319 1555 1555 2.05 SSBOND 2 CYS A 295 CYS A 311 1555 1555 2.07 SSBOND 3 CYS B 223 CYS B 319 1555 1555 2.05 SSBOND 4 CYS B 295 CYS B 311 1555 1555 2.06 SSBOND 5 CYS C 223 CYS C 319 1555 1555 2.08 SSBOND 6 CYS C 295 CYS C 311 1555 1555 2.05 SSBOND 7 CYS D 223 CYS D 319 1555 1555 2.04 SSBOND 8 CYS D 295 CYS D 311 1555 1555 2.06 LINK O3 MAN E 1 C1 MAN E 2 1555 1555 1.45 LINK OE1 GLU A 285 CA CA A 500 1555 1555 2.49 LINK OD1 ASN A 287 CA CA A 500 1555 1555 2.53 LINK OE1 GLU A 293 CA CA A 500 1555 1555 2.38 LINK OD1 ASN A 307 CA CA A 500 1555 1555 2.41 LINK OD1 ASP A 308 CA CA A 500 1555 1555 2.36 LINK O ASP A 308 CA CA A 500 1555 1555 2.45 LINK CA CA A 500 O4 MAN E 2 1555 1555 2.51 LINK CA CA A 500 O3 MAN E 2 1555 1555 2.55 LINK OE1 GLU B 285 CA CA B 500 1555 1555 2.49 LINK OD1 ASN B 287 CA CA B 500 1555 1555 2.43 LINK OE1 GLU B 293 CA CA B 500 1555 1555 2.41 LINK OD1 ASN B 307 CA CA B 500 1555 1555 2.47 LINK OD1 ASP B 308 CA CA B 500 1555 1555 2.42 LINK O ASP B 308 CA CA B 500 1555 1555 2.50 LINK O4 MAN B 402 CA CA B 500 1555 1555 2.53 LINK O3 MAN B 402 CA CA B 500 1555 1555 2.54 LINK OE1 GLU C 285 CA CA C 500 1555 1555 2.51 LINK OD1 ASN C 287 CA CA C 500 1555 1555 2.46 LINK OE1 GLU C 293 CA CA C 500 1555 1555 2.43 LINK OD1 ASN C 307 CA CA C 500 1555 1555 2.41 LINK OD1 ASP C 308 CA CA C 500 1555 1555 2.42 LINK O ASP C 308 CA CA C 500 1555 1555 2.44 LINK O4 MAN C 402 CA CA C 500 1555 1555 2.53 LINK O3 MAN C 402 CA CA C 500 1555 1555 2.56 LINK OE1 GLU D 285 CA CA D 500 1555 1555 2.48 LINK OD1 ASN D 287 CA CA D 500 1555 1555 2.47 LINK OE1 GLU D 293 CA CA D 500 1555 1555 2.47 LINK OD1 ASN D 307 CA CA D 500 1555 1555 2.43 LINK OD1 ASP D 308 CA CA D 500 1555 1555 2.41 LINK O ASP D 308 CA CA D 500 1555 1555 2.55 LINK O3 MAN D 402 CA CA D 500 1555 1555 2.49 LINK O4 MAN D 402 CA CA D 500 1555 1555 2.53 CISPEP 1 GLU A 285 PRO A 286 0 -2.61 CISPEP 2 GLU B 285 PRO B 286 0 -1.14 CISPEP 3 GLU C 285 PRO C 286 0 -2.07 CISPEP 4 GLU D 285 PRO D 286 0 -1.59 CRYST1 79.340 79.340 89.670 90.00 90.00 90.00 P 42 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012604 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011152 0.00000