PDB Short entry for 3P8P HEADER HYDROLASE/HYDROLASE INHIBITOR 14-OCT-10 3P8P TITLE CRYSTAL STRUCTURE OF HUMAN DIMETHYLARGININE DIMETHYLAMINOHYDROLASE-1 TITLE 2 (DDAH-1) VARIANT C274S BOUND WITH N5-(1-IMINOPENTYL)-L-ORNITHINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N(G),N(G)-DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DDAH-1, DIMETHYLARGININE DIMETHYLAMINOHYDROLASE 1, DDAHI, COMPND 5 DIMETHYLARGININASE-1; COMPND 6 EC: 3.5.3.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDAH, DDAH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-HDDAH-1 KEYWDS DDAH, NITRIC OXIDE SYNTHASE REGULATOR, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MONZINGO,M.LLUIS,Y.WANG,W.FAST,J.D.ROBERTUS REVDAT 5 06-SEP-23 3P8P 1 REMARK SEQADV REVDAT 4 08-NOV-17 3P8P 1 REMARK REVDAT 3 12-JAN-11 3P8P 1 JRNL REVDAT 2 17-NOV-10 3P8P 1 HEADER KEYWDS REVDAT 1 10-NOV-10 3P8P 0 JRNL AUTH M.LLUIS,Y.WANG,A.F.MONZINGO,W.FAST,J.D.ROBERTUS JRNL TITL CHARACTERIZATION OF C-ALKYL AMIDINES AS BIOAVAILABLE JRNL TITL 2 COVALENT REVERSIBLE INHIBITORS OF HUMAN DDAH-1. JRNL REF CHEMMEDCHEM V. 6 81 2011 JRNL REFN ISSN 1860-7179 JRNL PMID 20979083 JRNL DOI 10.1002/CMDC.201000392 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 16211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 818 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 886 REMARK 3 BIN R VALUE (WORKING SET) : 0.2911 REMARK 3 BIN FREE R VALUE : 0.3968 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 45 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.99400 REMARK 3 B22 (A**2) : 14.81000 REMARK 3 B33 (A**2) : -7.81500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.64200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.431 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.437 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.867 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.742 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 32.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : IPNO.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : IPNO.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI (111) LIQUID REMARK 200 NITROGEN COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3I2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% POLYETHYLENEGLYCOL 6000, 0.1 M REMARK 280 TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.81600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ARG B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 GLY B 5 REMARK 465 HIS B 6 REMARK 465 PRO B 7 REMARK 465 VAL B 283 REMARK 465 ASP B 284 REMARK 465 SER B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 HIS A 207 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 470 LEU B 114 CG CD1 CD2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 227 CG1 CG2 CD1 REMARK 470 ASN B 229 CG OD1 ND2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 ASP B 254 CG OD1 OD2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 71 73.80 -113.41 REMARK 500 PRO A 72 -14.82 -49.99 REMARK 500 PHE A 76 59.92 -91.97 REMARK 500 GLU A 85 -108.13 61.66 REMARK 500 ASP A 121 117.45 -31.86 REMARK 500 GLN A 148 -70.21 -48.22 REMARK 500 PHE A 158 64.98 -118.88 REMARK 500 ASP A 170 -151.04 57.34 REMARK 500 SER A 179 165.72 171.59 REMARK 500 SER A 191 147.37 -36.06 REMARK 500 ASN A 229 -3.83 76.94 REMARK 500 MET A 262 22.96 -149.13 REMARK 500 VAL A 268 51.59 -118.43 REMARK 500 ASP A 269 29.83 48.13 REMARK 500 ALA B 9 -144.05 -150.84 REMARK 500 ASP B 39 94.76 -66.24 REMARK 500 ALA B 81 141.24 -170.59 REMARK 500 GLU B 85 -126.32 61.23 REMARK 500 SER B 97 -8.56 -57.13 REMARK 500 ARG B 99 -16.47 -45.23 REMARK 500 ASP B 103 -70.34 -34.57 REMARK 500 ASP B 121 99.62 -29.62 REMARK 500 GLU B 122 -0.68 -55.47 REMARK 500 LEU B 126 135.34 177.08 REMARK 500 ASP B 130 0.70 -68.06 REMARK 500 SER B 143 -161.84 -109.87 REMARK 500 PHE B 158 54.70 -103.20 REMARK 500 ASP B 160 -7.01 -57.40 REMARK 500 ASP B 170 -136.16 41.70 REMARK 500 LYS B 175 18.68 -67.20 REMARK 500 SER B 179 170.22 178.97 REMARK 500 ALA B 220 -6.99 -57.44 REMARK 500 CYS B 222 -159.70 -148.12 REMARK 500 ASN B 229 -0.48 73.34 REMARK 500 LYS B 230 -58.37 -122.79 REMARK 500 SER B 263 -61.60 5.08 REMARK 500 LEU B 271 -161.72 -102.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LN6 A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LN6 B 286 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I2E RELATED DB: PDB REMARK 900 HUMAN DDAH-1 REMARK 900 RELATED ID: 3I4A RELATED DB: PDB REMARK 900 HUMAN DDAH-1 COMPLEXED WITH N5-(1-IMINOPROPYL)-L-ORNITHINE REMARK 900 RELATED ID: 3P8E RELATED DB: PDB REMARK 900 HUMAN DDAH-1 COMPLEXED WITH N5-(1-IMINOPENTYL)-L-ORNITHINE DBREF 3P8P A 1 285 UNP O94760 DDAH1_HUMAN 1 285 DBREF 3P8P B 1 285 UNP O94760 DDAH1_HUMAN 1 285 SEQADV 3P8P MET A -22 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY A -21 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A -20 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A -19 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -18 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -17 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -16 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -15 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -14 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -13 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A -12 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A -11 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY A -10 UNP O94760 EXPRESSION TAG SEQADV 3P8P LEU A -9 UNP O94760 EXPRESSION TAG SEQADV 3P8P VAL A -8 UNP O94760 EXPRESSION TAG SEQADV 3P8P PRO A -7 UNP O94760 EXPRESSION TAG SEQADV 3P8P ARG A -6 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY A -5 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A -4 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS A -3 UNP O94760 EXPRESSION TAG SEQADV 3P8P MET A -2 UNP O94760 EXPRESSION TAG SEQADV 3P8P ALA A -1 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A 0 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER A 274 UNP O94760 CYS 274 ENGINEERED MUTATION SEQADV 3P8P MET B -22 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY B -21 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B -20 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B -19 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -18 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -17 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -16 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -15 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -14 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -13 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B -12 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B -11 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY B -10 UNP O94760 EXPRESSION TAG SEQADV 3P8P LEU B -9 UNP O94760 EXPRESSION TAG SEQADV 3P8P VAL B -8 UNP O94760 EXPRESSION TAG SEQADV 3P8P PRO B -7 UNP O94760 EXPRESSION TAG SEQADV 3P8P ARG B -6 UNP O94760 EXPRESSION TAG SEQADV 3P8P GLY B -5 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B -4 UNP O94760 EXPRESSION TAG SEQADV 3P8P HIS B -3 UNP O94760 EXPRESSION TAG SEQADV 3P8P MET B -2 UNP O94760 EXPRESSION TAG SEQADV 3P8P ALA B -1 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B 0 UNP O94760 EXPRESSION TAG SEQADV 3P8P SER B 274 UNP O94760 CYS 274 ENGINEERED MUTATION SEQRES 1 A 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 308 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ALA GLY SEQRES 3 A 308 LEU GLY HIS PRO ALA ALA PHE GLY ARG ALA THR HIS ALA SEQRES 4 A 308 VAL VAL ARG ALA LEU PRO GLU SER LEU GLY GLN HIS ALA SEQRES 5 A 308 LEU ARG SER ALA LYS GLY GLU GLU VAL ASP VAL ALA ARG SEQRES 6 A 308 ALA GLU ARG GLN HIS GLN LEU TYR VAL GLY VAL LEU GLY SEQRES 7 A 308 SER LYS LEU GLY LEU GLN VAL VAL GLU LEU PRO ALA ASP SEQRES 8 A 308 GLU SER LEU PRO ASP CYS VAL PHE VAL GLU ASP VAL ALA SEQRES 9 A 308 VAL VAL CYS GLU GLU THR ALA LEU ILE THR ARG PRO GLY SEQRES 10 A 308 ALA PRO SER ARG ARG LYS GLU VAL ASP MET MET LYS GLU SEQRES 11 A 308 ALA LEU GLU LYS LEU GLN LEU ASN ILE VAL GLU MET LYS SEQRES 12 A 308 ASP GLU ASN ALA THR LEU ASP GLY GLY ASP VAL LEU PHE SEQRES 13 A 308 THR GLY ARG GLU PHE PHE VAL GLY LEU SER LYS ARG THR SEQRES 14 A 308 ASN GLN ARG GLY ALA GLU ILE LEU ALA ASP THR PHE LYS SEQRES 15 A 308 ASP TYR ALA VAL SER THR VAL PRO VAL ALA ASP GLY LEU SEQRES 16 A 308 HIS LEU LYS SER PHE CYS SER MET ALA GLY PRO ASN LEU SEQRES 17 A 308 ILE ALA ILE GLY SER SER GLU SER ALA GLN LYS ALA LEU SEQRES 18 A 308 LYS ILE MET GLN GLN MET SER ASP HIS ARG TYR ASP LYS SEQRES 19 A 308 LEU THR VAL PRO ASP ASP ILE ALA ALA ASN CYS ILE TYR SEQRES 20 A 308 LEU ASN ILE PRO ASN LYS GLY HIS VAL LEU LEU HIS ARG SEQRES 21 A 308 THR PRO GLU GLU TYR PRO GLU SER ALA LYS VAL TYR GLU SEQRES 22 A 308 LYS LEU LYS ASP HIS MET LEU ILE PRO VAL SER MET SER SEQRES 23 A 308 GLU LEU GLU LYS VAL ASP GLY LEU LEU THR SER CYS SER SEQRES 24 A 308 VAL LEU ILE ASN LYS LYS VAL ASP SER SEQRES 1 B 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 308 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET ALA GLY SEQRES 3 B 308 LEU GLY HIS PRO ALA ALA PHE GLY ARG ALA THR HIS ALA SEQRES 4 B 308 VAL VAL ARG ALA LEU PRO GLU SER LEU GLY GLN HIS ALA SEQRES 5 B 308 LEU ARG SER ALA LYS GLY GLU GLU VAL ASP VAL ALA ARG SEQRES 6 B 308 ALA GLU ARG GLN HIS GLN LEU TYR VAL GLY VAL LEU GLY SEQRES 7 B 308 SER LYS LEU GLY LEU GLN VAL VAL GLU LEU PRO ALA ASP SEQRES 8 B 308 GLU SER LEU PRO ASP CYS VAL PHE VAL GLU ASP VAL ALA SEQRES 9 B 308 VAL VAL CYS GLU GLU THR ALA LEU ILE THR ARG PRO GLY SEQRES 10 B 308 ALA PRO SER ARG ARG LYS GLU VAL ASP MET MET LYS GLU SEQRES 11 B 308 ALA LEU GLU LYS LEU GLN LEU ASN ILE VAL GLU MET LYS SEQRES 12 B 308 ASP GLU ASN ALA THR LEU ASP GLY GLY ASP VAL LEU PHE SEQRES 13 B 308 THR GLY ARG GLU PHE PHE VAL GLY LEU SER LYS ARG THR SEQRES 14 B 308 ASN GLN ARG GLY ALA GLU ILE LEU ALA ASP THR PHE LYS SEQRES 15 B 308 ASP TYR ALA VAL SER THR VAL PRO VAL ALA ASP GLY LEU SEQRES 16 B 308 HIS LEU LYS SER PHE CYS SER MET ALA GLY PRO ASN LEU SEQRES 17 B 308 ILE ALA ILE GLY SER SER GLU SER ALA GLN LYS ALA LEU SEQRES 18 B 308 LYS ILE MET GLN GLN MET SER ASP HIS ARG TYR ASP LYS SEQRES 19 B 308 LEU THR VAL PRO ASP ASP ILE ALA ALA ASN CYS ILE TYR SEQRES 20 B 308 LEU ASN ILE PRO ASN LYS GLY HIS VAL LEU LEU HIS ARG SEQRES 21 B 308 THR PRO GLU GLU TYR PRO GLU SER ALA LYS VAL TYR GLU SEQRES 22 B 308 LYS LEU LYS ASP HIS MET LEU ILE PRO VAL SER MET SER SEQRES 23 B 308 GLU LEU GLU LYS VAL ASP GLY LEU LEU THR SER CYS SER SEQRES 24 B 308 VAL LEU ILE ASN LYS LYS VAL ASP SER HET LN6 A 286 15 HET LN6 B 286 15 HETNAM LN6 N~5~-[(1E)-PENTANIMIDOYL]-L-ORNITHINE HETSYN LN6 N5-(1-IMINOPENTYL)-L-ORNITHINE FORMUL 3 LN6 2(C10 H21 N3 O2) FORMUL 5 HOH *130(H2 O) HELIX 1 1 SER A 24 ALA A 29 1 6 HELIX 2 2 ASP A 39 GLY A 55 1 17 HELIX 3 3 PHE A 76 ASP A 79 5 4 HELIX 4 4 ALA A 95 LYS A 100 5 6 HELIX 5 5 GLU A 101 LEU A 112 1 12 HELIX 6 6 ASP A 127 GLY A 129 5 3 HELIX 7 7 ASN A 147 PHE A 158 1 12 HELIX 8 8 HIS A 173 SER A 176 5 4 HELIX 9 9 SER A 191 MET A 204 1 14 HELIX 10 10 ASP A 217 ASN A 221 5 5 HELIX 11 11 TYR A 242 LYS A 251 1 10 HELIX 12 12 MET A 262 LYS A 267 1 6 HELIX 13 13 LEU A 272 SER A 276 5 5 HELIX 14 14 SER B 24 ALA B 29 1 6 HELIX 15 15 ASP B 39 SER B 56 1 18 HELIX 16 16 PHE B 76 ASP B 79 5 4 HELIX 17 17 ALA B 95 LYS B 100 5 6 HELIX 18 18 GLU B 101 GLU B 110 1 10 HELIX 19 19 LYS B 111 GLN B 113 5 3 HELIX 20 20 ASP B 127 GLY B 129 5 3 HELIX 21 21 ASN B 147 PHE B 158 1 12 HELIX 22 22 HIS B 173 SER B 176 5 4 HELIX 23 23 SER B 191 SER B 205 1 15 HELIX 24 24 TYR B 242 LYS B 251 1 10 HELIX 25 25 MET B 262 LYS B 267 1 6 HELIX 26 26 LEU B 272 SER B 276 5 5 SHEET 1 A 3 GLN A 61 LEU A 65 0 SHEET 2 A 3 HIS A 15 ARG A 19 1 N VAL A 18 O VAL A 63 SHEET 3 A 3 VAL A 277 ILE A 279 -1 O ILE A 279 N HIS A 15 SHEET 1 B 3 ALA A 81 CYS A 84 0 SHEET 2 B 3 THR A 87 ILE A 90 -1 O THR A 87 N CYS A 84 SHEET 3 B 3 ASN A 115 GLU A 118 1 O ASN A 115 N ALA A 88 SHEET 1 C 3 VAL A 131 PHE A 133 0 SHEET 2 C 3 GLU A 137 LEU A 142 -1 O PHE A 139 N LEU A 132 SHEET 3 C 3 ALA A 162 PRO A 167 1 O ALA A 162 N PHE A 138 SHEET 1 D 3 CYS A 178 GLY A 182 0 SHEET 2 D 3 LEU A 185 GLY A 189 -1 O ALA A 187 N SER A 179 SHEET 3 D 3 ASP A 210 VAL A 214 1 O VAL A 214 N ILE A 188 SHEET 1 E 3 ILE A 223 ILE A 227 0 SHEET 2 E 3 GLY A 231 HIS A 236 -1 O GLY A 231 N ILE A 227 SHEET 3 E 3 HIS A 255 PRO A 259 1 O MET A 256 N HIS A 232 SHEET 1 F 3 GLN B 61 LEU B 65 0 SHEET 2 F 3 HIS B 15 ARG B 19 1 N ALA B 16 O VAL B 63 SHEET 3 F 3 VAL B 277 ILE B 279 -1 O ILE B 279 N HIS B 15 SHEET 1 G 3 ALA B 81 CYS B 84 0 SHEET 2 G 3 THR B 87 ILE B 90 -1 O LEU B 89 N VAL B 82 SHEET 3 G 3 ASN B 115 GLU B 118 1 O VAL B 117 N ILE B 90 SHEET 1 H 3 VAL B 131 PHE B 133 0 SHEET 2 H 3 PHE B 138 LEU B 142 -1 O PHE B 139 N LEU B 132 SHEET 3 H 3 VAL B 163 PRO B 167 1 O SER B 164 N VAL B 140 SHEET 1 I 3 CYS B 178 GLY B 182 0 SHEET 2 I 3 LEU B 185 GLY B 189 -1 O LEU B 185 N GLY B 182 SHEET 3 I 3 ASP B 210 VAL B 214 1 O LEU B 212 N ILE B 188 SHEET 1 J 3 ILE B 223 ILE B 227 0 SHEET 2 J 3 GLY B 231 HIS B 236 -1 O GLY B 231 N ILE B 227 SHEET 3 J 3 HIS B 255 PRO B 259 1 O MET B 256 N HIS B 232 SITE 1 AC1 14 LEU A 30 ASP A 73 PHE A 76 ASP A 79 SITE 2 AC1 14 ARG A 98 ARG A 145 HIS A 173 LYS A 175 SITE 3 AC1 14 ASN A 221 VAL A 268 ASP A 269 THR A 273 SITE 4 AC1 14 SER A 274 HOH A 294 SITE 1 AC2 13 LEU B 30 ASP B 73 PHE B 76 ASP B 79 SITE 2 AC2 13 ARG B 98 ARG B 145 HIS B 173 LYS B 175 SITE 3 AC2 13 ASN B 221 VAL B 268 ASP B 269 THR B 273 SITE 4 AC2 13 SER B 274 CRYST1 47.226 79.632 73.608 90.00 89.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021175 0.000000 -0.000137 0.00000 SCALE2 0.000000 0.012558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013586 0.00000