PDB Short entry for 3PC8 HEADER DNA BINDING PROTEIN/LIGASE 21-OCT-10 3PC8 TITLE X-RAY CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF XRCC1 AND DNA TITLE 2 LIGASE III-ALPHA BRCT DOMAINS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN XRCC1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 534-631; COMPND 5 SYNONYM: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA LIGASE 3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 924-1008; COMPND 11 SYNONYM: DNA LIGASE III, POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 3; COMPND 12 EC: 6.5.1.1; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: XRCC-1, XRCC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: LIG3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCOLADUET KEYWDS DNA REPAIR, BRCT DOMAIN, PROTEIN:PROTEIN INTERACTIONS, DNA BINDING KEYWDS 2 PROTEIN - LIGASE COMPLEX, DNA BINDING PROTEIN-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CUNEO,J.M.KRAHN,R.E.LONDON REVDAT 3 21-FEB-24 3PC8 1 REMARK SEQADV LINK REVDAT 2 02-NOV-11 3PC8 1 JRNL VERSN REVDAT 1 15-JUN-11 3PC8 0 JRNL AUTH M.J.CUNEO,S.A.GABEL,J.M.KRAHN,M.A.RICKER,R.E.LONDON JRNL TITL THE STRUCTURAL BASIS FOR PARTITIONING OF THE XRCC1/DNA JRNL TITL 2 LIGASE III-{ALPHA} BRCT-MEDIATED DIMER COMPLEXES. JRNL REF NUCLEIC ACIDS RES. V. 39 7816 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21652643 JRNL DOI 10.1093/NAR/GKR419 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 17611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5141 - 4.1900 1.00 3064 162 0.1612 0.2002 REMARK 3 2 4.1900 - 3.3267 0.84 2453 129 0.2096 0.2627 REMARK 3 3 3.3267 - 2.9065 1.00 2896 153 0.2032 0.2426 REMARK 3 4 2.9065 - 2.6408 1.00 2848 150 0.2177 0.2639 REMARK 3 5 2.6408 - 2.4516 1.00 2849 150 0.2218 0.3141 REMARK 3 6 2.4516 - 2.3071 0.92 2621 136 0.2447 0.3008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 41.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.97450 REMARK 3 B22 (A**2) : -10.17320 REMARK 3 B33 (A**2) : -2.80130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3049 REMARK 3 ANGLE : 0.721 4135 REMARK 3 CHIRALITY : 0.053 428 REMARK 3 PLANARITY : 0.003 550 REMARK 3 DIHEDRAL : 12.272 1125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -16.0485 5.2734 -2.3471 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.1001 REMARK 3 T33: 0.0791 T12: -0.0313 REMARK 3 T13: 0.0210 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.5170 L22: 3.9939 REMARK 3 L33: 3.6521 L12: -0.7995 REMARK 3 L13: -0.0859 L23: 1.1524 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0086 S13: -0.1424 REMARK 3 S21: 0.0388 S22: -0.0155 S23: 0.2505 REMARK 3 S31: 0.0430 S32: -0.0513 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B OR (CHAIN X AND RESID 1) OR (CHAIN S AND REMARK 3 (RESID 170:172 OR RESID 72 OR RESID 215)) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6501 29.5525 -4.5323 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1408 REMARK 3 T33: 0.1195 T12: 0.0245 REMARK 3 T13: 0.0028 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.4048 L22: 6.4319 REMARK 3 L33: 3.4038 L12: 0.6141 REMARK 3 L13: 0.9142 L23: 0.7396 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.1134 S13: 0.1372 REMARK 3 S21: -0.1134 S22: -0.0182 S23: 0.1727 REMARK 3 S31: -0.0640 S32: 0.0771 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -7.5565 -17.8732 -3.6406 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0517 REMARK 3 T33: 0.0448 T12: -0.0098 REMARK 3 T13: -0.0381 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.9895 L22: 3.4252 REMARK 3 L33: 1.4138 L12: 0.9275 REMARK 3 L13: -0.5306 L23: -0.8826 REMARK 3 S TENSOR REMARK 3 S11: 0.1208 S12: -0.0371 S13: -0.1514 REMARK 3 S21: 0.1143 S22: -0.1041 S23: -0.2644 REMARK 3 S31: 0.1364 S32: 0.1829 S33: -0.0121 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -9.4495 53.3348 -2.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.2684 REMARK 3 T33: 0.2314 T12: 0.0021 REMARK 3 T13: 0.0236 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 4.7205 L22: 3.4440 REMARK 3 L33: 1.1708 L12: -0.8034 REMARK 3 L13: 0.9004 L23: 1.5475 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.4892 S13: 0.3034 REMARK 3 S21: -0.4284 S22: -0.0143 S23: -0.4709 REMARK 3 S31: -0.2173 S32: 0.3903 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 5 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 540:588 OR RESSEQ 599:626) REMARK 3 SELECTION : CHAIN B AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 540:588 OR RESSEQ 599:626) REMARK 3 ATOM PAIRS NUMBER : 370 REMARK 3 RMSD : 0.075 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 593:598 OR RESSEQ 627:630) REMARK 3 SELECTION : CHAIN B AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 593:598 OR RESSEQ 627:630) REMARK 3 ATOM PAIRS NUMBER : 45 REMARK 3 RMSD : 0.092 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESSEQ 589:592 REMARK 3 SELECTION : CHAIN B AND RESSEQ 589:592 REMARK 3 ATOM PAIRS NUMBER : 34 REMARK 3 RMSD : 0.056 REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 848:881 OR RESSEQ 888:890) REMARK 3 SELECTION : CHAIN D AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 848:881 OR RESSEQ 888:890) REMARK 3 ATOM PAIRS NUMBER : 178 REMARK 3 RMSD : 0.090 REMARK 3 NCS GROUP : 5 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 902:918) REMARK 3 SELECTION : CHAIN D AND (BACKBONE OR NAME CB) AND REMARK 3 (RESSEQ 902:918) REMARK 3 ATOM PAIRS NUMBER : 85 REMARK 3 RMSD : 0.071 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1M TRIS, AND 0.2 M REMARK 280 MGCL2 , PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.16000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 21 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 631 REMARK 465 MET B 534 REMARK 465 ALA B 631 REMARK 465 GLY C 835 REMARK 465 SER C 836 REMARK 465 ALA C 837 REMARK 465 ASP C 838 REMARK 465 GLU C 839 REMARK 465 THR C 840 REMARK 465 LEU C 841 REMARK 465 SER C 842 REMARK 465 GLN C 843 REMARK 465 THR C 844 REMARK 465 LYS C 845 REMARK 465 GLY D 835 REMARK 465 SER D 836 REMARK 465 ALA D 837 REMARK 465 ASP D 838 REMARK 465 GLU D 839 REMARK 465 THR D 840 REMARK 465 LEU D 841 REMARK 465 SER D 842 REMARK 465 GLN D 843 REMARK 465 THR D 844 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 534 CG SD CE REMARK 470 GLU A 536 CG CD OE1 OE2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 587 CD OE1 OE2 REMARK 470 GLU B 536 CG CD OE1 OE2 REMARK 470 ARG B 558 NE CZ NH1 NH2 REMARK 470 GLU B 577 CD OE1 OE2 REMARK 470 GLU B 587 CG CD OE1 OE2 REMARK 470 GLN B 630 CG CD OE1 NE2 REMARK 470 GLN C 881 CG CD OE1 NE2 REMARK 470 SER C 894 OG REMARK 470 ARG C 895 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 897 CE NZ REMARK 470 GLU D 882 CG CD OE1 OE2 REMARK 470 PHE D 883 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER D 894 OG REMARK 470 ASP D 896 CG OD1 OD2 REMARK 470 LYS D 897 CG CD CE NZ REMARK 470 LYS D 915 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 876 12.42 88.30 REMARK 500 ASP C 884 31.37 -92.46 REMARK 500 SER C 894 87.49 -6.11 REMARK 500 ASP D 876 12.70 86.51 REMARK 500 SER D 894 53.78 -67.57 REMARK 500 ASN D 898 73.18 -155.16 REMARK 500 PRO D 921 158.08 -48.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 72 O REMARK 620 2 HOH B 170 O 90.0 REMARK 620 3 HOH B 171 O 90.0 179.9 REMARK 620 4 HOH B 172 O 90.0 89.9 90.0 REMARK 620 5 HOH B 215 O 179.9 90.0 90.0 90.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PC6 RELATED DB: PDB REMARK 900 RELATED ID: 3PC7 RELATED DB: PDB REMARK 900 RELATED ID: 3QVG RELATED DB: PDB DBREF 3PC8 A 534 631 UNP Q60596 XRCC1_MOUSE 534 631 DBREF 3PC8 B 534 631 UNP Q60596 XRCC1_MOUSE 534 631 DBREF 3PC8 C 837 921 UNP P49916 DNLI3_HUMAN 924 1008 DBREF 3PC8 D 837 921 UNP P49916 DNLI3_HUMAN 924 1008 SEQADV 3PC8 MET A 534 UNP Q60596 ILE 534 ENGINEERED MUTATION SEQADV 3PC8 ARG A 574 UNP Q60596 TYR 574 ENGINEERED MUTATION SEQADV 3PC8 MET B 534 UNP Q60596 ILE 534 ENGINEERED MUTATION SEQADV 3PC8 ARG B 574 UNP Q60596 TYR 574 ENGINEERED MUTATION SEQADV 3PC8 GLY C 835 UNP P49916 EXPRESSION TAG SEQADV 3PC8 SER C 836 UNP P49916 EXPRESSION TAG SEQADV 3PC8 SER C 842 UNP P49916 CYS 929 ENGINEERED MUTATION SEQADV 3PC8 SER C 922 UNP P49916 EXPRESSION TAG SEQADV 3PC8 GLY D 835 UNP P49916 EXPRESSION TAG SEQADV 3PC8 SER D 836 UNP P49916 EXPRESSION TAG SEQADV 3PC8 SER D 842 UNP P49916 CYS 929 ENGINEERED MUTATION SEQADV 3PC8 SER D 922 UNP P49916 EXPRESSION TAG SEQRES 1 A 98 MET PRO GLU LEU PRO ASP PHE PHE GLU GLY LYS HIS PHE SEQRES 2 A 98 PHE LEU TYR GLY GLU PHE PRO GLY ASP GLU ARG ARG ARG SEQRES 3 A 98 LEU ILE ARG TYR VAL THR ALA PHE ASN GLY GLU LEU GLU SEQRES 4 A 98 ASP ARG MET ASN GLU ARG VAL GLN PHE VAL ILE THR ALA SEQRES 5 A 98 GLN GLU TRP ASP PRO ASN PHE GLU GLU ALA LEU MET GLU SEQRES 6 A 98 ASN PRO SER LEU ALA PHE VAL ARG PRO ARG TRP ILE TYR SEQRES 7 A 98 SER CYS ASN GLU LYS GLN LYS LEU LEU PRO HIS GLN LEU SEQRES 8 A 98 TYR GLY VAL VAL PRO GLN ALA SEQRES 1 B 98 MET PRO GLU LEU PRO ASP PHE PHE GLU GLY LYS HIS PHE SEQRES 2 B 98 PHE LEU TYR GLY GLU PHE PRO GLY ASP GLU ARG ARG ARG SEQRES 3 B 98 LEU ILE ARG TYR VAL THR ALA PHE ASN GLY GLU LEU GLU SEQRES 4 B 98 ASP ARG MET ASN GLU ARG VAL GLN PHE VAL ILE THR ALA SEQRES 5 B 98 GLN GLU TRP ASP PRO ASN PHE GLU GLU ALA LEU MET GLU SEQRES 6 B 98 ASN PRO SER LEU ALA PHE VAL ARG PRO ARG TRP ILE TYR SEQRES 7 B 98 SER CYS ASN GLU LYS GLN LYS LEU LEU PRO HIS GLN LEU SEQRES 8 B 98 TYR GLY VAL VAL PRO GLN ALA SEQRES 1 C 88 GLY SER ALA ASP GLU THR LEU SER GLN THR LYS VAL LEU SEQRES 2 C 88 LEU ASP ILE PHE THR GLY VAL ARG LEU TYR LEU PRO PRO SEQRES 3 C 88 SER THR PRO ASP PHE SER ARG LEU ARG ARG TYR PHE VAL SEQRES 4 C 88 ALA PHE ASP GLY ASP LEU VAL GLN GLU PHE ASP MET THR SEQRES 5 C 88 SER ALA THR HIS VAL LEU GLY SER ARG ASP LYS ASN PRO SEQRES 6 C 88 ALA ALA GLN GLN VAL SER PRO GLU TRP ILE TRP ALA CYS SEQRES 7 C 88 ILE ARG LYS ARG ARG LEU VAL ALA PRO SER SEQRES 1 D 88 GLY SER ALA ASP GLU THR LEU SER GLN THR LYS VAL LEU SEQRES 2 D 88 LEU ASP ILE PHE THR GLY VAL ARG LEU TYR LEU PRO PRO SEQRES 3 D 88 SER THR PRO ASP PHE SER ARG LEU ARG ARG TYR PHE VAL SEQRES 4 D 88 ALA PHE ASP GLY ASP LEU VAL GLN GLU PHE ASP MET THR SEQRES 5 D 88 SER ALA THR HIS VAL LEU GLY SER ARG ASP LYS ASN PRO SEQRES 6 D 88 ALA ALA GLN GLN VAL SER PRO GLU TRP ILE TRP ALA CYS SEQRES 7 D 88 ILE ARG LYS ARG ARG LEU VAL ALA PRO SER HET MG B 1 1 HET TRS D 2 8 HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 MG MG 2+ FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 HOH *208(H2 O) HELIX 1 1 ASP A 555 PHE A 567 1 13 HELIX 2 2 ASP A 589 ASN A 599 1 11 HELIX 3 3 ARG A 606 GLN A 617 1 12 HELIX 4 4 PRO A 621 GLY A 626 5 6 HELIX 5 5 ASP B 555 PHE B 567 1 13 HELIX 6 6 ASP B 589 ASN B 599 1 11 HELIX 7 7 ARG B 606 GLN B 617 1 12 HELIX 8 8 PRO B 621 GLY B 626 5 6 HELIX 9 9 ASP C 864 PHE C 875 1 12 HELIX 10 10 GLN C 881 ALA C 888 5 8 HELIX 11 11 SER C 905 ARG C 916 1 12 HELIX 12 12 ASP D 864 PHE D 875 1 12 HELIX 13 13 ASP D 884 ALA D 888 5 5 HELIX 14 14 SER D 905 ARG D 916 1 12 SHEET 1 A 4 GLU A 570 LEU A 571 0 SHEET 2 A 4 HIS A 545 LEU A 548 1 N PHE A 546 O GLU A 570 SHEET 3 A 4 PHE A 581 ILE A 583 1 O ILE A 583 N PHE A 547 SHEET 4 A 4 ALA A 603 VAL A 605 1 O ALA A 603 N VAL A 582 SHEET 1 B 4 GLU B 570 LEU B 571 0 SHEET 2 B 4 HIS B 545 LEU B 548 1 N PHE B 546 O GLU B 570 SHEET 3 B 4 PHE B 581 ILE B 583 1 O ILE B 583 N PHE B 547 SHEET 4 B 4 ALA B 603 VAL B 605 1 O ALA B 603 N VAL B 582 SHEET 1 C 4 ASP C 878 LEU C 879 0 SHEET 2 C 4 ARG C 855 TYR C 857 1 N LEU C 856 O ASP C 878 SHEET 3 C 4 HIS C 890 LEU C 892 1 O HIS C 890 N ARG C 855 SHEET 4 C 4 GLN C 902 VAL C 904 1 O GLN C 902 N VAL C 891 SHEET 1 D 4 ASP D 878 LEU D 879 0 SHEET 2 D 4 ARG D 855 TYR D 857 1 N LEU D 856 O ASP D 878 SHEET 3 D 4 HIS D 890 LEU D 892 1 N HIS D 890 O ARG D 855 SHEET 4 D 4 GLN D 902 VAL D 904 1 O VAL D 904 N VAL D 891 LINK MG MG B 1 O HOH B 72 1555 1555 2.08 LINK MG MG B 1 O HOH B 170 1555 1555 2.08 LINK MG MG B 1 O HOH B 171 1555 1555 2.08 LINK MG MG B 1 O HOH B 172 1555 1555 2.08 LINK MG MG B 1 O HOH B 215 1555 1555 2.08 SITE 1 AC1 6 HOH B 72 HOH B 170 HOH B 171 HOH B 172 SITE 2 AC1 6 HOH B 215 HIS B 545 SITE 1 AC2 11 ASP B 555 ARG B 558 GLN C 902 HOH D 25 SITE 2 AC2 11 HOH D 27 HOH D 147 HOH D 155 HOH D 156 SITE 3 AC2 11 HOH D 225 ASP D 876 ASP D 878 CRYST1 66.320 163.480 36.740 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015078 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027218 0.00000