PDB Short entry for 3PDF HEADER HYDROLASE/HYDROLASE INHIBITOR 22-OCT-10 3PDF TITLE DISCOVERY OF NOVEL CYANAMIDE-BASED INHIBITORS OF CATHEPSIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL PEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATHEPSIN C; COMPND 5 EC: 3.4.14.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSC, CPPI; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL: CHO-LEC CELL KEYWDS TWO DOMAINS, CYSTEIN PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,D.LAINE REVDAT 4 26-JUL-23 3PDF 1 JRNL HETSYN REVDAT 3 29-JUL-20 3PDF 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 17-JUL-19 3PDF 1 REMARK LINK REVDAT 1 26-OCT-11 3PDF 0 JRNL AUTH D.LAINE,M.PALOVICH,B.MCCLELAND,E.PETITJEAN,I.DELHOM,H.XIE, JRNL AUTH 2 J.DENG,G.LIN,R.DAVIS,A.JOLIT,N.NEVINS,B.ZHAO,J.VILLA, JRNL AUTH 3 J.SCHNECK,P.MCDEVITT,R.MIDGETT,C.KMETT,S.UMBRECHT,B.PECK, JRNL AUTH 4 A.B.DAVIS,D.BETTOUN JRNL TITL DISCOVERY OF NOVEL CYANAMIDE-BASED INHIBITORS OF CATHEPSIN JRNL TITL 2 C. JRNL REF ACS MED.CHEM.LETT. V. 2 142 2011 JRNL REFN ISSN 1948-5875 JRNL PMID 24900293 JRNL DOI 10.1021/ML100212K REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 33128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2086 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.756 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.54200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.39200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.27700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.54200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.39200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.27700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.54200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.39200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.27700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.54200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.39200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.27700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.08400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 85.08400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 ALA A 121 REMARK 465 SER A 122 REMARK 465 GLU A 123 REMARK 465 ASN A 124 REMARK 465 VAL A 125 REMARK 465 TYR A 126 REMARK 465 VAL A 127 REMARK 465 ASN A 128 REMARK 465 THR A 129 REMARK 465 ALA A 130 REMARK 465 HIS A 131 REMARK 465 LEU A 132 REMARK 465 LYS A 133 REMARK 465 ASN A 134 REMARK 465 SER A 135 REMARK 465 GLN A 136 REMARK 465 GLU A 137 REMARK 465 LYS A 138 REMARK 465 TYR A 139 REMARK 465 SER A 140 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 LEU A 143 REMARK 465 TYR A 144 REMARK 465 LYS A 145 REMARK 465 TYR A 146 REMARK 465 ASP A 147 REMARK 465 HIS A 148 REMARK 465 ASN A 149 REMARK 465 PHE A 150 REMARK 465 VAL A 151 REMARK 465 LYS A 152 REMARK 465 ALA A 153 REMARK 465 ILE A 154 REMARK 465 ASN A 155 REMARK 465 ALA A 156 REMARK 465 ILE A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 SER A 160 REMARK 465 TRP A 161 REMARK 465 THR A 162 REMARK 465 ALA A 163 REMARK 465 THR A 164 REMARK 465 THR A 165 REMARK 465 TYR A 166 REMARK 465 MET A 167 REMARK 465 GLU A 168 REMARK 465 TYR A 169 REMARK 465 GLU A 170 REMARK 465 THR A 171 REMARK 465 LEU A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 GLY A 175 REMARK 465 ASP A 176 REMARK 465 MET A 177 REMARK 465 ILE A 178 REMARK 465 ARG A 179 REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 HIS A 184 REMARK 465 SER A 185 REMARK 465 ARG A 186 REMARK 465 LYS A 187 REMARK 465 ILE A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 PRO A 191 REMARK 465 LYS A 192 REMARK 465 PRO A 193 REMARK 465 ALA A 194 REMARK 465 PRO A 195 REMARK 465 LEU A 196 REMARK 465 THR A 197 REMARK 465 ALA A 198 REMARK 465 GLU A 199 REMARK 465 ILE A 200 REMARK 465 GLN A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 ILE A 204 REMARK 465 LEU A 205 REMARK 465 GLY A 368 REMARK 465 LEU A 369 REMARK 465 ARG A 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 22 OG REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 GLU A 440 CG CD OE1 OE2 REMARK 470 ASN A 441 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 30.27 -154.39 REMARK 500 TYR A 64 -118.64 52.28 REMARK 500 SER A 88 -48.44 72.56 REMARK 500 ALA A 229 -151.43 66.94 REMARK 500 ILE A 282 -62.79 -108.20 REMARK 500 ASN A 374 73.90 -167.36 REMARK 500 ASN A 380 13.70 -148.47 REMARK 500 ILE A 429 45.48 -150.83 REMARK 500 GLU A 440 86.30 -66.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3PDF A 1 439 UNP P53634 CATC_HUMAN 25 463 SEQADV 3PDF THR A 129 UNP P53634 ILE 153 CONFLICT SEQADV 3PDF PHE A 206 UNP P53634 HIS 230 CONFLICT SEQADV 3PDF GLU A 440 UNP P53634 EXPRESSION TAG SEQADV 3PDF ASN A 441 UNP P53634 EXPRESSION TAG SEQRES 1 A 441 ASP THR PRO ALA ASN CYS THR TYR LEU ASP LEU LEU GLY SEQRES 2 A 441 THR TRP VAL PHE GLN VAL GLY SER SER GLY SER GLN ARG SEQRES 3 A 441 ASP VAL ASN CYS SER VAL MET GLY PRO GLN GLU LYS LYS SEQRES 4 A 441 VAL VAL VAL TYR LEU GLN LYS LEU ASP THR ALA TYR ASP SEQRES 5 A 441 ASP LEU GLY ASN SER GLY HIS PHE THR ILE ILE TYR ASN SEQRES 6 A 441 GLN GLY PHE GLU ILE VAL LEU ASN ASP TYR LYS TRP PHE SEQRES 7 A 441 ALA PHE PHE LYS TYR LYS GLU GLU GLY SER LYS VAL THR SEQRES 8 A 441 THR TYR CYS ASN GLU THR MET THR GLY TRP VAL HIS ASP SEQRES 9 A 441 VAL LEU GLY ARG ASN TRP ALA CYS PHE THR GLY LYS LYS SEQRES 10 A 441 VAL GLY THR ALA SER GLU ASN VAL TYR VAL ASN THR ALA SEQRES 11 A 441 HIS LEU LYS ASN SER GLN GLU LYS TYR SER ASN ARG LEU SEQRES 12 A 441 TYR LYS TYR ASP HIS ASN PHE VAL LYS ALA ILE ASN ALA SEQRES 13 A 441 ILE GLN LYS SER TRP THR ALA THR THR TYR MET GLU TYR SEQRES 14 A 441 GLU THR LEU THR LEU GLY ASP MET ILE ARG ARG SER GLY SEQRES 15 A 441 GLY HIS SER ARG LYS ILE PRO ARG PRO LYS PRO ALA PRO SEQRES 16 A 441 LEU THR ALA GLU ILE GLN GLN LYS ILE LEU PHE LEU PRO SEQRES 17 A 441 THR SER TRP ASP TRP ARG ASN VAL HIS GLY ILE ASN PHE SEQRES 18 A 441 VAL SER PRO VAL ARG ASN GLN ALA SER CYS GLY SER CYS SEQRES 19 A 441 TYR SER PHE ALA SER MET GLY MET LEU GLU ALA ARG ILE SEQRES 20 A 441 ARG ILE LEU THR ASN ASN SER GLN THR PRO ILE LEU SER SEQRES 21 A 441 PRO GLN GLU VAL VAL SER CYS SER GLN TYR ALA GLN GLY SEQRES 22 A 441 CYS GLU GLY GLY PHE PRO TYR LEU ILE ALA GLY LYS TYR SEQRES 23 A 441 ALA GLN ASP PHE GLY LEU VAL GLU GLU ALA CYS PHE PRO SEQRES 24 A 441 TYR THR GLY THR ASP SER PRO CYS LYS MET LYS GLU ASP SEQRES 25 A 441 CYS PHE ARG TYR TYR SER SER GLU TYR HIS TYR VAL GLY SEQRES 26 A 441 GLY PHE TYR GLY GLY CYS ASN GLU ALA LEU MET LYS LEU SEQRES 27 A 441 GLU LEU VAL HIS HIS GLY PRO MET ALA VAL ALA PHE GLU SEQRES 28 A 441 VAL TYR ASP ASP PHE LEU HIS TYR LYS LYS GLY ILE TYR SEQRES 29 A 441 HIS HIS THR GLY LEU ARG ASP PRO PHE ASN PRO PHE GLU SEQRES 30 A 441 LEU THR ASN HIS ALA VAL LEU LEU VAL GLY TYR GLY THR SEQRES 31 A 441 ASP SER ALA SER GLY MET ASP TYR TRP ILE VAL LYS ASN SEQRES 32 A 441 SER TRP GLY THR GLY TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 33 A 441 ILE ARG ARG GLY THR ASP GLU CYS ALA ILE GLU SER ILE SEQRES 34 A 441 ALA VAL ALA ALA THR PRO ILE PRO LYS LEU GLU ASN MODRES 3PDF ASN A 5 ASN GLYCOSYLATION SITE MODRES 3PDF ASN A 95 ASN GLYCOSYLATION SITE MODRES 3PDF ASN A 252 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET LXV A 442 20 HET NAG A 603 14 HET NAG A 604 14 HET CL A 443 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM LXV 2,5-DIBROMO-N-{(3R,5S)-1-[(Z)-IMINOMETHYL]-5- HETNAM 2 LXV METHYLPYRROLIDIN-3-YL}BENZENESULFONAMIDE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 LXV C12 H15 BR2 N3 O2 S FORMUL 6 CL CL 1- FORMUL 7 HOH *283(H2 O) HELIX 1 1 THR A 7 LEU A 12 1 6 HELIX 2 2 ASN A 29 MET A 33 5 5 HELIX 3 3 SER A 233 ASN A 252 1 20 HELIX 4 4 SER A 260 SER A 268 1 9 HELIX 5 5 GLN A 272 GLY A 276 5 5 HELIX 6 6 PHE A 278 ALA A 283 1 6 HELIX 7 7 GLY A 284 PHE A 290 1 7 HELIX 8 8 GLU A 294 PHE A 298 5 5 HELIX 9 9 ASN A 332 GLY A 344 1 13 HELIX 10 10 TYR A 353 TYR A 359 5 7 HELIX 11 11 ASP A 422 ILE A 426 5 5 SHEET 1 A12 TYR A 75 GLU A 86 0 SHEET 2 A12 LYS A 89 THR A 97 -1 O TYR A 93 N LYS A 82 SHEET 3 A12 TRP A 110 LYS A 117 -1 O LYS A 117 N ASN A 95 SHEET 4 A12 TYR A 75 GLU A 86 0 SHEET 5 A12 GLY A 67 LEU A 72 -1 N ILE A 70 O TRP A 77 SHEET 6 A12 SER A 57 ILE A 63 -1 N ILE A 63 O GLY A 67 SHEET 7 A12 THR A 49 ASP A 52 -1 N ALA A 50 O GLY A 58 SHEET 8 A12 GLN A 36 GLN A 45 -1 N TYR A 43 O TYR A 51 SHEET 9 A12 GLY A 13 SER A 24 -1 N PHE A 17 O VAL A 40 SHEET 10 A12 TRP A 110 LYS A 117 -1 O CYS A 112 N GLY A 20 SHEET 11 A12 GLY A 100 ASP A 104 -1 N GLY A 100 O PHE A 113 SHEET 12 A12 TRP A 110 LYS A 117 -1 O PHE A 113 N GLY A 100 SHEET 1 B 3 TRP A 211 ASP A 212 0 SHEET 2 B 3 HIS A 381 THR A 390 -1 O TYR A 388 N TRP A 211 SHEET 3 B 3 MET A 346 PHE A 350 -1 N MET A 346 O LEU A 385 SHEET 1 C 5 TRP A 211 ASP A 212 0 SHEET 2 C 5 HIS A 381 THR A 390 -1 O TYR A 388 N TRP A 211 SHEET 3 C 5 ASP A 397 LYS A 402 -1 O LYS A 402 N LEU A 384 SHEET 4 C 5 TYR A 414 ARG A 418 -1 O PHE A 415 N VAL A 401 SHEET 5 C 5 ILE A 363 TYR A 364 1 N TYR A 364 O ARG A 416 SHEET 1 D 2 SER A 318 TYR A 323 0 SHEET 2 D 2 VAL A 431 PRO A 435 -1 O THR A 434 N GLU A 320 SSBOND 1 CYS A 6 CYS A 94 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 112 1555 1555 2.03 SSBOND 3 CYS A 231 CYS A 274 1555 1555 2.03 SSBOND 4 CYS A 267 CYS A 307 1555 1555 2.04 SSBOND 5 CYS A 297 CYS A 313 1555 1555 2.02 LINK ND2 ASN A 5 C1 NAG A 604 1555 1555 1.45 LINK ND2 ASN A 95 C1 NAG A 603 1555 1555 1.45 LINK SG CYS A 234 C18 LXV A 442 1555 1555 1.63 LINK ND2 ASN A 252 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 LYS A 46 LEU A 47 0 4.10 CISPEP 2 ASP A 371 PRO A 372 0 -11.77 CRYST1 85.084 88.784 114.554 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008730 0.00000