PDB Short entry for 3PDZ HEADER HYDROLASE 10-MAY-99 3PDZ TITLE SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE HPTP1E COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (TYROSINE PHOSPHATASE (PTP-BAS, TYPE 1)); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ2 DOMAIN; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS PDZ DOMAIN, HUMAN PHOSPHATASE, HPTP1E, PTP-BAS, SPECIFICITY OF KEYWDS 2 BINDING, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.KOZLOV,K.GEHRING,I.EKIEL REVDAT 4 27-DEC-23 3PDZ 1 REMARK REVDAT 3 16-MAR-22 3PDZ 1 REMARK REVDAT 2 24-FEB-09 3PDZ 1 VERSN REVDAT 1 17-MAR-00 3PDZ 0 JRNL AUTH G.KOZLOV,K.GEHRING,I.EKIEL JRNL TITL SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE JRNL TITL 2 HPTP1E AND ITS INTERACTIONS WITH C-TERMINAL PEPTIDES FROM JRNL TITL 3 THE FAS RECEPTOR. JRNL REF BIOCHEMISTRY V. 39 2572 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10704206 JRNL DOI 10.1021/BI991913C REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ,RICE,SIMONSON,WARREN REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 PRIMARY REFERENCE REMARK 4 REMARK 4 3PDZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001032. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% D2O/90% WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D AND 3D EXPERIMENTS REMARK 210 USING UNLABELED, 15N- LABELED, AND DOUBLE-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 9 O LEU A 87 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 -162.78 -63.89 REMARK 500 1 GLU A 10 72.11 -105.87 REMARK 500 1 ASP A 15 -27.91 88.67 REMARK 500 1 VAL A 26 144.33 -33.13 REMARK 500 1 THR A 28 -67.68 -151.71 REMARK 500 1 HIS A 32 -57.36 -132.88 REMARK 500 1 PRO A 42 61.56 -61.56 REMARK 500 1 GLN A 43 -47.94 -149.93 REMARK 500 1 SER A 48 -71.12 -53.64 REMARK 500 1 ASN A 80 58.52 -66.06 REMARK 500 1 THR A 81 -71.46 -95.57 REMARK 500 1 GLN A 83 -82.77 -64.67 REMARK 500 1 LEU A 89 -164.91 -104.11 REMARK 500 1 LYS A 91 102.04 -52.11 REMARK 500 2 PRO A 3 -166.77 -69.06 REMARK 500 2 GLU A 10 74.33 -106.18 REMARK 500 2 ASP A 15 -38.27 179.81 REMARK 500 2 VAL A 26 138.58 -30.63 REMARK 500 2 THR A 28 -50.76 -151.70 REMARK 500 2 HIS A 32 -46.76 -163.90 REMARK 500 2 PRO A 42 59.94 -62.01 REMARK 500 2 GLN A 43 -47.69 -147.53 REMARK 500 2 SER A 48 -71.49 -53.76 REMARK 500 2 GLU A 67 106.17 -46.53 REMARK 500 2 ASN A 80 62.90 -65.88 REMARK 500 2 THR A 81 -70.87 -91.70 REMARK 500 2 GLN A 83 -77.88 -65.25 REMARK 500 2 LEU A 89 -162.83 -103.88 REMARK 500 2 PRO A 95 109.19 -53.47 REMARK 500 3 PRO A 3 -161.78 -70.73 REMARK 500 3 GLU A 10 70.54 -105.98 REMARK 500 3 ASP A 15 -42.93 84.02 REMARK 500 3 VAL A 26 161.30 -40.46 REMARK 500 3 THR A 28 -58.23 -151.71 REMARK 500 3 HIS A 32 -80.61 61.67 REMARK 500 3 PRO A 42 62.01 -61.16 REMARK 500 3 GLN A 43 -48.60 -150.55 REMARK 500 3 LYS A 54 133.76 -36.23 REMARK 500 3 GLU A 67 95.07 -48.23 REMARK 500 3 ASN A 80 62.28 -66.00 REMARK 500 3 THR A 81 -68.68 -93.80 REMARK 500 3 GLN A 83 -77.26 -65.47 REMARK 500 3 LEU A 89 -165.19 -105.66 REMARK 500 3 LYS A 91 103.63 -46.89 REMARK 500 4 LYS A 2 89.26 -155.17 REMARK 500 4 GLU A 10 72.42 -106.09 REMARK 500 4 LEU A 18 -168.68 -101.14 REMARK 500 4 VAL A 26 145.13 -30.54 REMARK 500 4 THR A 28 -64.96 -151.69 REMARK 500 4 HIS A 32 -84.71 58.18 REMARK 500 REMARK 500 THIS ENTRY HAS 497 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3PDZ A 1 96 UNP Q12923 PTN13_HUMAN 1361 1456 SEQRES 1 A 96 PRO LYS PRO GLY ASP ILE PHE GLU VAL GLU LEU ALA LYS SEQRES 2 A 96 ASN ASP ASN SER LEU GLY ILE SER VAL THR GLY GLY VAL SEQRES 3 A 96 ASN THR SER VAL ARG HIS GLY GLY ILE TYR VAL LYS ALA SEQRES 4 A 96 VAL ILE PRO GLN GLY ALA ALA GLU SER ASP GLY ARG ILE SEQRES 5 A 96 HIS LYS GLY ASP ARG VAL LEU ALA VAL ASN GLY VAL SER SEQRES 6 A 96 LEU GLU GLY ALA THR HIS LYS GLN ALA VAL GLU THR LEU SEQRES 7 A 96 ARG ASN THR GLY GLN VAL VAL HIS LEU LEU LEU GLU LYS SEQRES 8 A 96 GLY GLN SER PRO THR HELIX 1 1 ALA A 45 ASP A 49 1 5 HELIX 2 2 HIS A 71 ARG A 79 1 9 SHEET 1 A 3 ILE A 6 LEU A 11 0 SHEET 2 A 3 VAL A 85 GLU A 90 -1 N LEU A 89 O PHE A 7 SHEET 3 A 3 ARG A 57 VAL A 61 -1 N ALA A 60 O LEU A 88 SHEET 1 B 2 ILE A 20 THR A 23 0 SHEET 2 B 2 TYR A 36 VAL A 40 -1 N ALA A 39 O SER A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000